Experiment set13IT092 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
SM_b21480 -5.3 -1.2 hypothetical protein compare
SMa1323 -5.2 -2.4 Transcription regulator compare
SMc00876 -5.1 -3.5 ATP-binding MRP protein compare
SMa0846 -4.9 -1.1 transposase, fragment compare
SMc00404 -4.5 -1.1 hypothetical protein compare
SMc02850 -4.5 -2.7 DNA polymerase I compare
SMc02485 -4.4 -1.7 signal peptide protein compare
SMc01206 -4.3 -1.4 queuine tRNA-ribosyltransferase compare
SMc00012 -4.1 -1.6 cytochrome C oxidase assembly protein compare
SMc02115 -4.0 -0.9 hypothetical protein compare
SMa1924 -4.0 -0.9 hypothetical protein compare
SMa0789 -3.9 -2.3 GntR family transcriptional regulator compare
SMc02425 -3.9 -2.5 transcriptional regulator compare
SMc02232 -3.8 -1.9 hypothetical protein compare
SMc04121 -3.6 -1.1 uracil phosphoribosyltransferase compare
SMc00987 -3.6 -2.5 hypothetical protein compare
SMc02510 -3.5 -0.8 ferric uptake regulation protein compare
SMc00451 -3.5 -6.4 processing protease compare
SMc01939 -3.5 -1.1 urease subunit beta compare
SMc00334 -3.4 -1.4 cytidylate kinase compare
SMc00492 -3.4 -0.8 hypothetical protein compare
SMc02640 -3.4 -4.6 UDP-glucuronic acid epimerase compare
SMa0905 -3.4 -1.1 hypothetical protein compare
SMc01220 -3.4 -6.4 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc03070 -3.3 -7.6 glucose-6-phosphate 1-dehydrogenase compare
SMc00928 -3.3 -1.1 signal peptide protein compare
SMc01342 -3.3 -2.3 hypothetical protein compare
SMc00073 -3.3 -1.7 hypothetical protein compare
SMc02144 -3.3 -1.9 phosphate ABC transporter permease compare
SMc02739 -3.2 -3.2 glycine betaine transport ATP-binding ABC transporter protein compare
SMc00187 -3.2 -1.8 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SMc02576 -3.2 -1.0 acetyltransferase compare
SMc01472 -3.2 -1.0 50S ribosomal protein L11 methyltransferase compare
SMc04085 -3.2 -5.3 hypothetical protein compare
SMc00085 -3.1 -4.6 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc01361 -3.1 -2.1 dihydroorotase compare
SM_b20452 -3.1 -3.1 hypothetical protein compare
SMc00914 -3.1 -2.7 oxidoreductase compare
SMc00329 -3.1 -2.0 iron response regulator protein compare
SMc03978 -3.0 -2.1 transketolase compare
SMc00963 -3.0 -2.1 hypothetical protein compare
SMc02683 -3.0 -1.7 hypothetical protein compare
SMc00821 -3.0 -1.0 hypothetical protein compare
SMc01505 -3.0 -1.0 hypothetical protein compare
SMc01337 -2.9 -1.0 hypothetical protein compare
SMc00010 -2.9 -1.5 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc03069 -2.9 -1.8 6-phosphogluconolactonase compare
SMc01930 -2.9 -2.3 hypothetical protein compare
SMc01258 -2.9 -5.2 hypothetical protein compare
SMc02362 -2.9 -1.5 cytochrome c-type biogenesis protein CcmE compare
SMc02856 -2.9 -10.7 penicillin-binding protein compare
SMc01360 -2.8 -1.6 aspartate carbamoyltransferase catalytic subunit compare
SM_b21551 -2.7 -0.9 hypothetical protein compare
SMc04296 -2.7 -0.8 cell division protein FtsZ compare
SMc02858 -2.7 -0.6 chaperone protein DnaJ compare
SMc01800 -2.7 -0.9 cytochrome C oxidase assembly transmembrane protein compare
SMc00760 -2.7 -3.8 recombinase A compare
SMc04024 -2.7 -4.3 membrane-bound lytic murein transglycosylase compare
SM_b20258 -2.7 -3.6 transcriptional regulator compare
SM_b21569 -2.7 -1.7 transcriptional regulator compare
SM_b20803 -2.7 -2.8 3-deoxy-manno-octulosonate cytidylyltransferase compare
SMc03763 -2.7 -1.8 cytosine-specific methyltransferase compare
SMc00067 -2.7 -10.4 outer-membranne lipoprotein compare
SMc02561 -2.6 -2.1 hypothetical protein compare
SMc03127 -2.6 -1.6 ABC transporter permease compare
SMc01850 -2.6 -2.3 hypothetical protein compare
SMc02544 -2.6 -0.8 hypothetical protein compare
SMc03836 -2.5 -0.8 acyl-CoA thioesterase i protein compare
SMa1240 -2.5 -1.0 NapF ferredoxin component of periplasmic nitrate reductase compare
SMc01153 -2.5 -0.8 enoyl-CoA hydratase compare
SMc02077 -2.5 -2.3 exodeoxyribonuclease III protein compare
SMc00302 -2.5 -1.9 hypothetical protein compare
SMa1118 -2.5 -0.9 HspC2 heat shock protein compare
SMc00189 -2.5 -3.2 cytochrome C1 protein compare
SMc02505 -2.4 -0.8 hypothetical protein compare
SMc03839 -2.4 -1.6 hypothetical protein compare
SMa0955 -2.4 -1.4 GntR family transcriptional regulator compare
SMc01577 -2.4 -1.3 hypothetical protein compare
SMc02582 -2.4 -2.7 hypothetical protein compare
SM_b21523 -2.4 -3.1 cell division inhibitor protein compare
SMc00169 -2.4 -10.0 malic enzyme compare
SMc02147 -2.3 -4.4 phosphate regulon sensor histidine kinase transmembrane protein compare
SMc01039 -2.3 -2.1 hypothetical protein compare
SMc04383 -2.3 -3.6 putative hydrolase, required for lysine catabolism (from data) compare
SMc02778 -2.3 -0.7 hydroxyacid aldolase compare
SMc01207 -2.3 -1.9 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc03967 -2.3 -0.9 Holliday junction resolvase compare
SMc04391 -2.3 -1.5 3-ketoacyl-ACP reductase compare
SMa0748 -2.3 -1.7 MucR family transcriptional regulator compare
SMc03242 -2.3 -2.5 GTP-binding protein compare
SMc02149 -2.3 -1.3 hypothetical protein compare
SMc00412 -2.1 -2.3 orotidine 5'-phosphate decarboxylase compare
SMc00712 -2.1 -1.6 hypothetical protein compare
SMc03158 -2.1 -1.3 ABC transporter permease compare
SMa1002 -2.1 -1.2 hypothetical protein compare
SMc04385 -2.1 -4.0 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc00355 -2.1 -2.6 hypothetical protein compare
SMc00427 -2.1 -1.1 peptide chain release factor RF-3 protein compare
SMc00602 -2.1 -4.6 excinuclease ABC subunit C compare
SM_b21455 -2.1 -3.0 hypothetical protein compare
SMc02246 -2.0 -0.5 hypothetical protein compare
SMc01770 -2.0 -1.5 serine hydroxymethyltransferase compare
SMa2253 -2.0 -1.3 hypothetical protein compare
SMc02719 -2.0 -0.5 transposase compare
SMc01579 -2.0 -0.8 hypothetical protein compare
SMc01147 -2.0 -1.3 coproporphyrinogen III oxidase compare
SMa2219 -2.0 -3.3 decarboxylase compare
SMc00511 -1.9 -2.8 D-ribulose-5-phosphate 3-epimerase compare
SMc03124 -1.9 -3.1 periplasmic binding ABC transporter protein compare
SMc02234 -1.9 -1.5 hypothetical protein compare
SMc04003 -1.9 -1.1 50S ribosomal protein L36 compare
SMc02909 -1.9 -0.9 transglycosylase transmembrane protein compare
SMc03889 -1.9 -1.9 transporter compare
SMc01877 -1.9 -4.4 DNA repair protein compare
SMc00981 -1.9 -3.8 ferredoxin protein compare
SMc00689 -1.9 -3.6 lipoprotein compare
SMc01881 -1.9 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02143 -1.9 -3.0 phosphate ABC transporter permease compare
SM_b20270 -1.9 -1.6 proline racemase compare
SMc03135 -1.8 -1.9 amino-acid transport system ATP-binding ABC transporter protein compare
SMc00378 -1.8 -1.7 exodeoxyribonuclease VII large subunit compare
SMc00013 -1.8 -0.9 cytochrome C oxidase subunit III transmembrane protein compare
SMc03850 -1.8 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02897 -1.8 -2.1 cytochrome C transmembrane protein compare
SMc02543 -1.7 -2.0 hypothetical protein compare
SM_b21213 -1.7 -3.0 serinethreonine protein phosphatase compare
SM_b20822 -1.7 -3.0 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SMc01364 -1.7 -0.8 DNA topoisomerase I compare
SMa0450 -1.7 -1.4 hypothetical protein compare
SMc01471 -1.7 -1.7 cytochrome C oxidase assembly factor transmembrane protein compare
SMc01880 -1.7 -1.2 pantoate--beta-alanine ligase compare
SMc02718 -1.7 -1.5 hypothetical protein compare
SMc03924 -1.7 -5.2 glycogen synthase compare
SMc00556 -1.7 -3.3 DNA repair protein RadA compare
SMc01146 -1.6 -2.7 deoxyribonucleotide triphosphate pyrophosphatase compare
SMc00450 -1.6 -1.4 protoheme IX farnesyltransferase compare
SMc02941 -1.6 -2.7 hypothetical protein compare
SM_b20811 -1.6 -2.0 hypothetical protein compare
SMc03229 -1.6 -0.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02145 -1.6 -0.5 signal peptide protein compare
SM_b20307 -1.6 -0.6 dihydroxyacetone kinase compare
SMc04169 -1.6 -4.8 transcriptional regulator compare
SMc02050 -1.6 -1.8 trigger factor compare
SMc01242 -1.5 -1.0 signal peptide protein compare
SMc02165 -1.5 -4.5 orotate phosphoribosyltransferase compare
SMc04233 -1.5 -1.6 hypothetical protein compare
SMc01208 -1.5 -1.6 peptidyl-prolyl cis-trans isomerase B protein compare
SM_b21479 -1.5 -1.0 hypothetical protein compare
SM_b20296 -1.5 -1.8 permease compare
SMa1053 -1.5 -1.0 hypothetical protein compare
SMc02280 -1.5 -1.1 hypothetical protein compare
SMc02753 -1.5 -0.7 PTS system transporter subunit IIA compare
SMc00691 -1.5 -1.9 site-specific tyrosine recombinase XerD compare
SMc02039 -1.5 -2.7 oxidoreductase compare
SMc02484 -1.5 -1.5 amino acid efflux transmembrane protein compare
SMc00555 -1.5 -0.7 colicin V production transmembrane protein compare
SMc02833 -1.5 -1.2 penicillin-insensitive murein endopeptidase compare
SMc01187 -1.5 -0.7 rare lipoprotein A compare
SMc02046 -1.5 -1.5 hypothetical protein compare
SMc00419 -1.4 -2.9 glutathione synthetase compare
SMc00640 -1.4 -3.7 phosphoserine aminotransferase compare
SMa1243 -1.4 -2.8 Azu1 pseudoazurin compare
SMc01947 -1.4 -3.1 hypothetical protein compare
SMc01606 -1.4 -2.9 permease compare
SMa0232 -1.4 -2.1 hypothetical protein compare
SMc01578 -1.4 -5.2 aspartate aminotransferase compare
SMc03973 -1.4 -4.5 hypothetical protein compare
SMc00006 -1.4 -1.4 hypothetical protein compare
SMc02861 -1.4 -1.1 phosphate transporter compare
SMc00557 -1.4 -2.7 alanine racemase compare
SMc00941 -1.4 -1.0 hypothetical protein compare
SM_b20880 -1.4 -4.7 ATP-dependent RNA helicase compare
SMc04432 -1.4 -1.8 hypothetical protein compare
SMa0211 -1.4 -0.7 hypothetical protein compare
SM_b21096 -1.4 -0.8 amino acid transporter ABC transporter ATP-binding protein compare
SMc00667 -1.3 -1.2 hypothetical protein compare
SMc00034 -1.3 -2.9 oxidoreductase compare
SMc04191 -1.3 -2.1 hypothetical protein compare
SMc02114 -1.3 -1.7 hypothetical protein compare
SMa2265 -1.3 -2.5 hypothetical protein compare
SMc04428 -1.3 -2.1 hypothetical protein compare
SMa2389 -1.3 -1.5 OsmC-like protein compare
SMc03981 -1.3 -3.2 phosphoglycerate kinase compare
SMc00827 -1.3 -4.2 transport transmembrane protein compare
SM_b20217 -1.3 -2.9 hypothetical protein compare
SMc03053 -1.3 -0.9 flagellar biosynthesis protein FliQ compare
SMc00959 -1.3 -1.3 hypothetical protein compare
SMa0340 -1.2 -1.7 TrpR binding protein WrbA compare
SMc00009 -1.2 -3.2 cytochrome C oxidase subunit II protein compare
SMa0947 -1.2 -1.7 hypothetical protein compare
SMc03006 -1.2 -0.8 chemotaxis regulator protein compare
SMc00854 -1.2 -1.2 hypothetical protein compare
SM_b21493 -1.2 -2.1 AsnC family transcriptional regulator compare
SMa0326 -1.2 -1.8 short chain alcohol dehydrogenase-related dehydrogenase compare
SMc00580 -1.2 -1.8 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMc00514 -1.2 -2.1 monooxygenase compare
SMc01461 -1.2 -2.3 DNA helicase II protein compare
SMc00188 -1.2 -3.2 cytochrome B transmembrane protein compare
SMa0009 -1.2 -2.5 formate dehydrogenase subunit epsilon compare
SMc01718 -1.2 -5.2 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment