Experiment set13IT091 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cobalt chloride hexahydrate 0.6 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3661 -4.1 -5.6 hypothetical protein compare
Pf6N2E2_563 -4.1 -9.0 Serine transporter conserved
Pf6N2E2_4071 -3.3 -4.5 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5527 -3.1 -2.9 Cold shock protein CspC compare
Pf6N2E2_446 -3.0 -4.6 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_1633 -3.0 -3.9 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_4615 -2.9 -2.0 type IV pili signal transduction protein PilI compare
Pf6N2E2_3323 -2.8 -3.8 hypothetical protein compare
Pf6N2E2_4612 -2.8 -3.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4391 -2.7 -5.7 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_5711 -2.6 -6.5 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_3829 -2.6 -3.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3607 -2.6 -8.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4120 -2.6 -13.2 Trk system potassium uptake protein TrkA compare
Pf6N2E2_5679 -2.6 -3.4 hypothetical protein compare
Pf6N2E2_2634 -2.5 -9.0 Potassium uptake protein TrkH compare
Pf6N2E2_3847 -2.5 -2.4 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_4381 -2.5 -5.0 hypothetical protein compare
Pf6N2E2_4453 -2.5 -13.1 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4360 -2.5 -9.9 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_2967 -2.5 -2.9 Cold shock protein CspA compare
Pf6N2E2_5150 -2.5 -4.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2010 -2.5 -1.6 hypothetical protein compare
Pf6N2E2_5155 -2.5 -3.6 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5677 -2.5 -2.1 Carbon storage regulator compare
Pf6N2E2_4155 -2.4 -9.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_1635 -2.4 -4.6 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_4187 -2.3 -7.4 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2852 -2.3 -9.3 GGDEF domain/EAL domain protein compare
Pf6N2E2_282 -2.3 -1.5 GNAT family acetyltransferase YjcF compare
Pf6N2E2_1806 -2.3 -2.5 hypothetical protein compare
Pf6N2E2_5573 -2.2 -4.8 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_2447 -2.2 -6.4 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_1632 -2.2 -2.9 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_1634 -2.2 -4.6 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_4618 -2.2 -3.4 Chemotaxis signal transduction protein compare
Pf6N2E2_1040 -2.2 -2.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2129 -2.2 -3.9 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4987 -2.1 -1.0 MaoC-like domain protein compare
Pf6N2E2_5841 -2.1 -1.4 GlcG protein compare
Pf6N2E2_5668 -2.1 -4.4 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_4422 -2.1 -2.2 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_3611 -2.1 -1.9 HflC protein compare
Pf6N2E2_5328 -2.0 -4.6 FIG00958649: hypothetical protein compare
Pf6N2E2_5181 -2.0 -7.1 Paraquat-inducible protein A compare
Pf6N2E2_5534 -2.0 -1.4 FIG000859: hypothetical protein YebC compare
Pf6N2E2_5006 -2.0 -4.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3908 -2.0 -1.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5520 -2.0 -5.3 Sensory box histidine kinase compare
Pf6N2E2_3325 -2.0 -1.9 ABC transporter, ATP-binding protein compare
Pf6N2E2_5544 -2.0 -6.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5430 -2.0 -3.2 Transglycosylase, Slt family compare
Pf6N2E2_3834 -2.0 -3.7 Lipoprotein NlpD compare
Pf6N2E2_3763 -1.9 -2.0 hypothetical protein compare
Pf6N2E2_4077 -1.9 -3.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2258 -1.9 -6.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5111 -1.9 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_5705 -1.9 -3.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3081 -1.8 -6.0 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_5178 -1.8 -3.6 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4413 -1.8 -6.8 FIG004064: hypothetical protein compare
Pf6N2E2_2835 -1.8 -3.0 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_4635 -1.8 -5.8 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_3257 -1.8 -1.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4636 -1.8 -5.8 periplasmic binding protein, putative compare
Pf6N2E2_2201 -1.8 -4.2 Transmembrane regulator protein PrtR compare
Pf6N2E2_2519 -1.8 -1.2 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_1625 -1.8 -2.5 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2732 -1.8 -4.5 Transcriptional regulator, LysR family compare
Pf6N2E2_2885 -1.7 -4.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_3612 -1.7 -2.5 HflK protein compare
Pf6N2E2_5671 -1.7 -3.0 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4382 -1.7 -6.7 FIG00953403: hypothetical protein compare
Pf6N2E2_1032 -1.7 -1.6 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_621 -1.7 -3.8 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5669 -1.7 -6.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_3792 -1.7 -6.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_3079 -1.7 -6.5 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_4614 -1.7 -2.7 twitching motility protein PilH compare
Pf6N2E2_3283 -1.7 -5.2 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_4617 -1.6 -10.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_5241 -1.6 -1.4 Aminopeptidase N compare
Pf6N2E2_4908 -1.6 -6.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4797 -1.6 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_133 -1.6 -2.6 hypothetical protein compare
Pf6N2E2_2261 -1.6 -2.6 VacJ-like lipoprotein precursor compare
Pf6N2E2_525 -1.6 -4.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1636 -1.6 -4.9 Ferrichrome-iron receptor compare
Pf6N2E2_624 -1.6 -3.0 hypothetical protein PA3071 compare
Pf6N2E2_3920 -1.6 -9.8 Cystine ABC transporter, permease protein compare
Pf6N2E2_4810 -1.6 -6.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_623 -1.6 -1.0 FIG00954674: hypothetical protein compare
Pf6N2E2_5300 -1.5 -8.8 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_2013 -1.5 -0.7 hypothetical protein compare
Pf6N2E2_4691 -1.5 -2.4 hypothetical protein compare
Pf6N2E2_4153 -1.5 -3.9 Sensory box histidine kinase compare
Pf6N2E2_5346 -1.5 -2.0 rRNA small subunit methyltransferase I compare
Pf6N2E2_2264 -1.5 -2.2 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_3270 -1.5 -3.6 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3919 -1.5 -7.5 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf6N2E2_3791 -1.5 -7.3 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_1776 -1.5 -2.1 Chemotaxis protein CheD compare
Pf6N2E2_6064 -1.5 -3.9 2-methylaconitate isomerase compare
Pf6N2E2_1705 -1.5 -1.7 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2375 -1.5 -2.0 Response regulator NasT compare
Pf6N2E2_3321 -1.5 -5.1 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_2127 -1.5 -4.2 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_423 -1.5 -0.9 Putative phosphatase YfbT compare
Pf6N2E2_919 -1.5 -1.3 FIG00954373: hypothetical protein compare
Pf6N2E2_4162 -1.4 -2.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4829 -1.4 -3.6 OsmC/Ohr family protein compare
Pf6N2E2_3255 -1.4 -2.7 YrbA protein compare
Pf6N2E2_3666 -1.4 -1.3 InaA protein compare
Pf6N2E2_1545 -1.4 -1.8 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_6063 -1.4 -4.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_4390 -1.4 -6.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_2700 -1.4 -5.4 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_5321 -1.4 -7.2 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_3529 -1.4 -1.8 Toxin A compare
Pf6N2E2_1626 -1.4 -5.1 Putative ATP-binding component of a transport system compare
Pf6N2E2_2373 -1.4 -1.4 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_3252 -1.4 -4.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5331 -1.3 -3.5 ATPase, AFG1 family compare
Pf6N2E2_5317 -1.3 -8.9 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_5956 -1.3 -4.3 FIG004453: protein YceG like compare
Pf6N2E2_3040 -1.3 -5.3 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_5555 -1.3 -0.8 Cold shock protein CspA compare
Pf6N2E2_2526 -1.3 -3.9 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_1213 -1.3 -2.4 hypothetical protein compare
Pf6N2E2_2518 -1.3 -1.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2282 -1.3 -1.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3658 -1.3 -6.1 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_4388 -1.3 -7.9 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_3039 -1.3 -6.6 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3839 -1.3 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_6140 -1.3 -0.8 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_762 -1.3 -5.4 FIG00960186: hypothetical protein compare
Pf6N2E2_4486 -1.3 -4.4 Glycine cleavage system H protein compare
Pf6N2E2_4599 -1.3 -1.8 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_2293 -1.3 -4.0 COG0488: ATPase components of ABC transporters with duplicated ATPase domains compare
Pf6N2E2_3826 -1.3 -3.7 Nitrogen regulation protein NR(I) compare
Pf6N2E2_2694 -1.2 -4.8 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_5768 -1.2 -2.4 DNA recombination-dependent growth factor C compare
Pf6N2E2_4399 -1.2 -3.6 GGDEF domain/EAL domain protein compare
Pf6N2E2_170 -1.2 -2.1 lipoprotein, putative compare
Pf6N2E2_302 -1.2 -2.9 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_817 -1.2 -5.2 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_4570 -1.2 -2.6 Cation/multidrug efflux pump compare
Pf6N2E2_2938 -1.2 -2.7 Outer membrane lipoprotein compare
Pf6N2E2_3279 -1.2 -3.1 FIG138315: Putative alpha helix protein compare
Pf6N2E2_2114 -1.2 -1.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3586 -1.2 -4.3 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_3762 -1.2 -3.0 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_3206 -1.2 -1.0 hypothetical protein compare
Pf6N2E2_2912 -1.2 -1.3 FIG00954094: hypothetical protein compare
Pf6N2E2_827 -1.2 -1.7 probable dioxygenase compare
Pf6N2E2_4276 -1.2 -3.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2068 -1.2 -2.3 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_5743 -1.1 -2.8 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_75 -1.1 -2.8 Colicin V production protein compare
Pf6N2E2_3179 -1.1 -1.8 FIG021952: putative membrane protein compare
Pf6N2E2_2503 -1.1 -1.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_529 -1.1 -3.3 FIG00954439: hypothetical protein compare
Pf6N2E2_2388 -1.1 -2.0 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_5703 -1.1 -2.3 outer membrane protein H1 compare
Pf6N2E2_2899 -1.1 -2.6 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_3655 -1.1 -9.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_1661 -1.1 -4.8 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5676 -1.1 -3.1 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_1087 -1.1 -4.3 Iron siderophore sensor protein compare
Pf6N2E2_3351 -1.1 -2.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4963 -1.1 -1.3 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_2218 -1.1 -2.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2810 -1.1 -2.9 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_5183 -1.1 -5.9 Paraquat-inducible protein B compare
Pf6N2E2_3841 -1.1 -3.0 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5243 -1.1 -1.0 hypothetical protein compare
Pf6N2E2_4684 -1.1 -3.0 hypothetical protein compare
Pf6N2E2_5235 -1.1 -5.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) compare
Pf6N2E2_2985 -1.1 -2.2 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_761 -1.1 -3.9 Hemolysin-type calcium-binding region compare
Pf6N2E2_4585 -1.0 -5.1 Cell division protein FtsX compare
Pf6N2E2_555 -1.0 -2.9 Uncharacterized protein ImpB compare
Pf6N2E2_3517 -1.0 -2.3 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_5987 -1.0 -2.8 OmpA family protein compare
Pf6N2E2_4982 -1.0 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_5093 -1.0 -6.2 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_3876 -1.0 -1.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_5687 -1.0 -5.1 Transporter, MFS superfamily compare
Pf6N2E2_4889 -1.0 -4.8 Putative transport protein compare
Pf6N2E2_5307 -1.0 -3.3 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_2513 -1.0 -2.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4086 -1.0 -7.7 sodium/alanine transporter compare
Pf6N2E2_2340 -1.0 -2.1 Transcriptional regulator, GntR family compare
Pf6N2E2_1743 -1.0 -1.2 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_4369 -1.0 -0.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5182 -1.0 -3.2 Paraquat-inducible protein A compare
Pf6N2E2_5318 -1.0 -8.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3837 -1.0 -5.8 ABC-type amino acid transport, signal transduction systems, periplasmic component/domain compare
Pf6N2E2_5944 -1.0 -2.7 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare


Specific Phenotypes

For 36 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Cobalt chloride hexahydrate across organisms