Experiment set13IT091 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
SMc02850 -4.8 -3.2 DNA polymerase I compare
SMc03100 -4.6 -1.9 hypothetical protein compare
SMc01845 -4.4 -1.9 transglycosylase transmembrane protein compare
SMc03242 -4.4 -3.3 GTP-binding protein compare
SMc01220 -4.2 -6.3 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02232 -4.1 -2.3 hypothetical protein compare
SMc00302 -3.8 -2.3 hypothetical protein compare
SMc00492 -3.6 -0.9 hypothetical protein compare
SMc04024 -3.5 -8.5 membrane-bound lytic murein transglycosylase compare
SMc03978 -3.3 -2.3 transketolase compare
SMc02234 -3.3 -1.8 hypothetical protein compare
SMc02640 -3.3 -5.9 UDP-glucuronic acid epimerase compare
SMc00067 -3.2 -11.8 outer-membranne lipoprotein compare
SMc02362 -3.2 -1.7 cytochrome c-type biogenesis protein CcmE compare
SMc04242 -3.1 -1.8 zinc uptake regulation protein compare
SMc02753 -3.1 -1.1 PTS system transporter subunit IIA compare
SMc01361 -3.1 -3.6 dihydroorotase compare
SMc02641 -3.0 -3.4 UDP-glucose 6-dehydrogenase compare
SMc02867 -2.9 -2.0 multidrug-efflux system transmembrane protein compare
SMc02055 -2.9 -1.9 phytoene synthase compare
SMc03763 -2.9 -2.0 cytosine-specific methyltransferase compare
SMc01119 -2.9 -1.7 hypothetical protein compare
SMc02833 -2.8 -2.0 penicillin-insensitive murein endopeptidase compare
SMc02144 -2.8 -3.0 phosphate ABC transporter permease compare
SMc00169 -2.8 -13.7 malic enzyme compare
SMc00053 -2.8 -0.7 monovalent cation/H+ antiporter subunit C compare
SMc02582 -2.8 -3.2 hypothetical protein compare
SMc01206 -2.7 -1.4 queuine tRNA-ribosyltransferase compare
SMc01342 -2.7 -4.5 hypothetical protein compare
SMc00565 -2.7 -0.8 50S ribosomal protein L9 compare
SMc03996 -2.7 -5.1 thiamine-phosphate pyrophosphorylase compare
SMc00876 -2.7 -6.4 ATP-binding MRP protein compare
SMc00566 -2.7 -2.3 hypothetical protein compare
SMc00928 -2.7 -1.3 signal peptide protein compare
SMc00329 -2.7 -2.7 iron response regulator protein compare
SMc02077 -2.6 -2.8 exodeoxyribonuclease III protein compare
SMc00859 -2.6 -1.8 hypothetical protein compare
SMc03967 -2.6 -1.1 Holliday junction resolvase compare
SMc01501 -2.6 -2.9 mannitol 2-dehydrogenase compare
SM_b21480 -2.5 -1.4 hypothetical protein compare
SMa0789 -2.5 -2.7 GntR family transcriptional regulator compare
SMc00815 -2.5 -1.4 inosine 5'-monophosphate dehydrogenase compare
SMc01881 -2.4 -3.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc02856 -2.4 -10.9 penicillin-binding protein compare
SMc00427 -2.3 -1.3 peptide chain release factor RF-3 protein compare
SMc00013 -2.3 -2.1 cytochrome C oxidase subunit III transmembrane protein compare
SMc02425 -2.3 -4.3 transcriptional regulator compare
SMc02853 -2.3 -4.7 hypothetical protein compare
SMc01258 -2.3 -6.3 hypothetical protein compare
SMc04085 -2.2 -4.0 hypothetical protein compare
SMc02246 -2.2 -0.5 hypothetical protein compare
SMc00451 -2.2 -5.5 processing protease compare
SMc02149 -2.1 -1.5 hypothetical protein compare
SMc00461 -2.1 -1.4 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMa1095 -2.1 -0.9 hypothetical protein compare
SMc00914 -2.1 -3.2 oxidoreductase compare
SMc03070 -2.1 -5.9 glucose-6-phosphate 1-dehydrogenase compare
SMc03091 -2.1 -3.4 arginase compare
SMc02115 -2.1 -0.9 hypothetical protein compare
SMc00189 -2.1 -4.1 cytochrome C1 protein compare
SMc00963 -2.1 -2.1 hypothetical protein compare
SMa0144 -2.0 -0.9 hypothetical protein compare
SMc01208 -2.0 -2.2 peptidyl-prolyl cis-trans isomerase B protein compare
SMc01880 -2.0 -1.3 pantoate--beta-alanine ligase compare
SMc02107 -2.0 -0.8 hypothetical protein compare
SMc04233 -2.0 -2.4 hypothetical protein compare
SMc02495 -1.9 -1.1 translaldolase compare
SMc00012 -1.9 -1.2 cytochrome C oxidase assembly protein compare
SMc04385 -1.9 -3.6 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc00334 -1.9 -1.1 cytidylate kinase compare
SMc00760 -1.9 -4.4 recombinase A compare
SMc00419 -1.9 -3.3 glutathione synthetase compare
SMc01461 -1.9 -4.8 DNA helicase II protein compare
SMc04391 -1.8 -1.4 3-ketoacyl-ACP reductase compare
SMc03863 -1.8 -2.9 50S ribosomal protein L19 compare
SMc04296 -1.8 -0.7 cell division protein FtsZ compare
SMc01471 -1.8 -2.4 cytochrome C oxidase assembly factor transmembrane protein compare
SMc03006 -1.8 -1.1 chemotaxis regulator protein compare
SMc01360 -1.8 -1.9 aspartate carbamoyltransferase catalytic subunit compare
SMc01700 -1.7 -5.1 peptidyl-prolyl cis-trans isomerase A compare
SMc01929 -1.7 -2.4 hypothetical protein compare
SMc02909 -1.7 -1.1 transglycosylase transmembrane protein compare
SMc02145 -1.7 -0.6 signal peptide protein compare
SMc01187 -1.7 -1.2 rare lipoprotein A compare
SM_b21479 -1.7 -1.5 hypothetical protein compare
SMc01242 -1.7 -1.8 signal peptide protein compare
SMc00579 -1.7 -3.2 dimethyladenosine transferase compare
SMc02683 -1.7 -1.9 hypothetical protein compare
SMc01012 -1.6 -1.2 hypothetical protein compare
SMc00369 -1.6 -1.0 oxidoreductase compare
SMc04383 -1.6 -2.9 putative hydrolase, required for lysine catabolism (from data) compare
SMc00188 -1.6 -5.2 cytochrome B transmembrane protein compare
SMc00352 -1.6 -1.2 acetyltransferase compare
SMa0848 -1.6 -2.2 hypothetical protein compare
SM_b20942 -1.6 -3.8 UDP glucose 4-epimerase compare
SMc00006 -1.6 -2.4 hypothetical protein compare
SMc01969 -1.6 -4.8 hypothetical protein compare
SMc00085 -1.6 -2.9 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMa1924 -1.5 -0.7 hypothetical protein compare
SMc02510 -1.5 -0.6 ferric uptake regulation protein compare
SMc02165 -1.5 -4.6 orotate phosphoribosyltransferase compare
SMc02543 -1.5 -1.9 hypothetical protein compare
SMc02799 -1.5 -1.9 16S rRNA methyltransferase GidB compare
SMc01578 -1.4 -6.6 aspartate aminotransferase compare
SMc01347 -1.4 -2.6 hypothetical protein compare
SMc02976 -1.4 -2.6 transcriptional regulator compare
SMc00009 -1.4 -3.1 cytochrome C oxidase subunit II protein compare
SMc04384 -1.4 -4.7 (R)-2-hydroxyglutarate dehydrogenase (EC 1.1.99.39) (from data) compare
SMc00450 -1.4 -1.3 protoheme IX farnesyltransferase compare
SMc04432 -1.4 -2.1 hypothetical protein compare
SMc02866 -1.4 -1.8 transcriptional regulator compare
SMc01183 -1.4 -0.9 LexA repressor compare
SMc02309 -1.4 -4.3 arsenate reductase compare
SM_b21175 -1.4 -2.5 phosphate uptake ABC transporter permease compare
SM_b20880 -1.4 -5.2 ATP-dependent RNA helicase compare
SMc00987 -1.4 -1.5 hypothetical protein compare
SM_b21024 -1.4 -2.4 hypothetical protein compare
SMc03924 -1.4 -6.5 glycogen synthase compare
SMc03124 -1.4 -2.7 periplasmic binding ABC transporter protein compare
SMc00640 -1.3 -5.9 phosphoserine aminotransferase compare
SMc04327 -1.3 -0.8 hypothetical protein compare
SMc00466 -1.3 -2.1 hypothetical protein compare
SMc02102 -1.3 -2.5 hypothetical protein compare
SMc00689 -1.3 -2.8 lipoprotein compare
SMc00982 -1.3 -3.3 dioxygenase compare
SMc02636 -1.3 -2.1 hypothetical protein compare
SMc02561 -1.3 -1.5 hypothetical protein compare
SMc02266 -1.3 -1.2 hypothetical protein compare
SMa2215 -1.3 -2.5 GntR family transcriptional regulator compare
SMc01569 -1.3 -0.4 carbamoyl phosphate synthase small subunit compare
SMa1240 -1.3 -0.9 NapF ferredoxin component of periplasmic nitrate reductase compare
SMc00981 -1.3 -4.0 ferredoxin protein compare
SMc02164 -1.3 -1.7 fructokinase compare
SMc04169 -1.3 -5.5 transcriptional regulator compare
SMc00470 -1.3 -2.4 hypothetical protein compare
SMa0841 -1.3 -3.2 transposase, fragment compare
SMc00665 -1.3 -1.2 hypothetical protein compare
SMc02778 -1.3 -0.7 hydroxyacid aldolase compare
SM_b20728 -1.3 -1.6 hypothetical protein compare
SMa1017 -1.3 -1.3 hypothetical protein compare
SM_b20123 -1.3 -2.0 transcriptional regulator compare
SMc03973 -1.3 -6.1 hypothetical protein compare
SMc02897 -1.3 -2.1 cytochrome C transmembrane protein compare
SMc00230 -1.2 -3.7 hypothetical protein compare
SMa1413 -1.2 -1.5 hypothetical protein compare
SMc02908 -1.2 -3.8 recombination protein RecR compare
SMc00073 -1.2 -1.3 hypothetical protein compare
SMc00540 -1.2 -1.9 hypothetical protein compare
SMa1201 -1.2 -1.7 hypothetical protein compare
SMc01144 -1.2 -2.6 ribonuclease PH compare
SMc02755 -1.2 -3.7 S-adenosyl-L-homocysteine hydrolase compare
SMc00010 -1.2 -1.1 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc02448 -1.2 -1.4 mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase compare
SMc03128 -1.2 -1.8 ABC transporter permease compare
SMc01235 -1.2 -6.6 excinuclease ABC subunit A compare
SMc02868 -1.2 -2.8 multidrug efflux system protein compare
SMc02862 -1.2 -4.1 Pit accessory protein compare
SMc01853 -1.2 -3.1 hypothetical protein compare
SM_b21174 -1.2 -2.1 phosphate uptake ABC transporter permease compare
SMc03850 -1.2 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc00355 -1.2 -2.3 hypothetical protein compare
SM_b20413 -1.2 -0.8 hypothetical protein compare
SMc02280 -1.2 -1.2 hypothetical protein compare
SM_b20655 -1.2 -1.4 hypothetical protein compare
SMc03069 -1.2 -2.0 6-phosphogluconolactonase compare
SMc00937 -1.2 -5.6 TRK system potassium uptake transmembrane protein compare
SMc01568 -1.2 -0.8 hypothetical protein compare
SM_b20549 -1.1 -2.2 hypothetical protein compare
SM_b20091 -1.1 -3.2 hypothetical protein compare
SMc02979 -1.1 -3.9 hypothetical protein compare
SMc00667 -1.1 -1.2 hypothetical protein compare
SM_b20194 -1.1 -3.5 hypothetical protein compare
SMc00970 -1.1 -1.8 exodeoxyribonuclease VII small subunit compare
SMc00507 -1.1 -1.8 hypothetical protein compare
SMa0846 -1.1 -0.8 transposase, fragment compare
SMc00602 -1.1 -3.3 excinuclease ABC subunit C compare
SM_b20563 -1.1 -1.9 hypothetical protein compare
SMc01607 -1.1 -3.9 permease compare
SMc00641 -1.1 -4.1 D-3-phosphoglycerate dehydrogenase compare
SMc01438 -1.1 -2.3 protease precursor signal peptide protein compare
SM_b20226 -1.1 -1.1 hypothetical protein compare
SMc03051 -1.1 -1.3 flagellar biosynthesis repressor FlbT compare
SMc04231 -1.1 -4.4 excinuclease ABC subunit B compare
SMa1921 -1.1 -1.4 hypothetical protein compare
SMc00800 -1.1 -0.8 hypothetical protein compare
SM_b21523 -1.1 -2.0 cell division inhibitor protein compare
SMc02155 -1.1 -4.7 hypothetical protein compare
SMc00712 -1.0 -0.7 hypothetical protein compare
SMc04330 -1.0 -1.5 trimethylamine methyltransferase compare
SMa1452 -1.0 -2.3 hypothetical protein compare
SMc00351 -1.0 -0.7 hypothetical protein compare
SM_b20021 -1.0 -0.5 transcriptional regulator compare
SMc02812 -1.0 -1.4 hypothetical protein compare
SMc01147 -1.0 -1.5 coproporphyrinogen III oxidase compare
SMa0914 -1.0 -2.6 hypothetical protein compare
SMc01605 -1.0 -3.3 periplasmic binding ABC transporter protein compare
SMc03159 -1.0 -1.4 ABC transporter ATP-binding protein compare
SMc02863 -1.0 -2.4 recombination protein F compare
SMc01877 -1.0 -2.5 DNA repair protein compare
SMc01577 -1.0 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Sinorhizobium meliloti 1021 in agar plate interaction control experiments