Experiment set13IT090 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cobalt chloride hexahydrate 0.4 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4071 -4.1 -4.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4612 -3.0 -3.5 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5571 -2.9 -1.9 hypothetical protein compare
Pf6N2E2_3607 -2.5 -7.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5150 -2.5 -4.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2447 -2.4 -5.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5679 -2.3 -4.5 hypothetical protein compare
Pf6N2E2_3658 -2.1 -7.8 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5534 -2.1 -1.4 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3661 -2.0 -6.1 hypothetical protein compare
Pf6N2E2_3908 -2.0 -2.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4052 -2.0 -1.5 FIG00955481: hypothetical protein compare
Pf6N2E2_2080 -2.0 -1.8 hypothetical protein compare
Pf6N2E2_3027 -2.0 -1.4 Baseplate assembly protein V compare
Pf6N2E2_563 -2.0 -7.8 Serine transporter conserved
Pf6N2E2_4092 -2.0 -3.2 FIG00954395: hypothetical protein compare
Pf6N2E2_2681 -2.0 -1.8 3-phosphoglycerate kinase compare
Pf6N2E2_5705 -1.9 -3.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5768 -1.9 -2.9 DNA recombination-dependent growth factor C compare
Pf6N2E2_5319 -1.8 -6.9 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_4797 -1.8 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5111 -1.8 -2.3 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1315 -1.8 -2.2 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_4162 -1.8 -2.8 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3461 -1.7 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5321 -1.7 -8.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2129 -1.7 -3.5 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3847 -1.6 -2.4 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_2367 -1.6 -1.8 hypothetical protein compare
Pf6N2E2_5155 -1.6 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4615 -1.6 -1.7 type IV pili signal transduction protein PilI compare
Pf6N2E2_1032 -1.6 -1.5 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_40 -1.5 -3.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2264 -1.5 -2.2 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4614 -1.5 -2.8 twitching motility protein PilH compare
Pf6N2E2_1776 -1.5 -2.0 Chemotaxis protein CheD compare
Pf6N2E2_170 -1.5 -2.3 lipoprotein, putative compare
Pf6N2E2_3885 -1.5 -1.4 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_3004 -1.5 -2.8 Prophage baseplate assembly protein V compare
Pf6N2E2_3830 -1.5 -3.4 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_3659 -1.5 -4.5 Protein fixF compare
Pf6N2E2_4418 -1.5 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3325 -1.5 -1.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_88 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_2732 -1.4 -3.9 Transcriptional regulator, LysR family compare
Pf6N2E2_4545 -1.4 -2.0 hypothetical protein compare
Pf6N2E2_5317 -1.4 -8.8 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_4453 -1.4 -9.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5331 -1.4 -3.4 ATPase, AFG1 family compare
Pf6N2E2_6064 -1.4 -3.7 2-methylaconitate isomerase compare
Pf6N2E2_1635 -1.4 -3.2 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_659 -1.4 -1.9 Transcriptional regulatory protein ompR compare
Pf6N2E2_4918 -1.4 -1.3 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_1636 -1.3 -4.5 Ferrichrome-iron receptor compare
Pf6N2E2_3264 -1.3 -4.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_55 -1.3 -1.8 Probable hydrolase compare
Pf6N2E2_5318 -1.3 -9.9 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_638 -1.3 -2.2 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_1754 -1.3 -1.9 FIG00731982: hypothetical protein compare
Pf6N2E2_4369 -1.3 -0.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3829 -1.3 -2.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_5320 -1.2 -5.4 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_3611 -1.2 -1.6 HflC protein compare
Pf6N2E2_1876 -1.2 -1.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_2413 -1.2 -1.5 FIG074102: hypothetical protein compare
Pf6N2E2_6164 -1.2 -1.2 tRNA-Val-TAC compare
Pf6N2E2_1305 -1.2 -2.1 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_2123 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_4276 -1.2 -3.1 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3283 -1.2 -4.5 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_446 -1.2 -4.2 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_3277 -1.2 -1.8 FagA protein compare
Pf6N2E2_4188 -1.2 -2.2 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_5671 -1.2 -2.3 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2277 -1.2 -1.4 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5342 -1.1 -1.6 21 kDa hemolysin precursor compare
Pf6N2E2_3321 -1.1 -4.0 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_1634 -1.1 -3.0 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_2282 -1.1 -1.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_855 -1.1 -1.5 Transcriptional regulator, IclR family compare
Pf6N2E2_865 -1.1 -1.5 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2561 -1.1 -2.2 FIG00955434: hypothetical protein compare
Pf6N2E2_2064 -1.1 -1.6 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_417 -1.1 -1.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_160 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_5006 -1.1 -3.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5646 -1.1 -0.9 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_1128 -1.1 -1.7 Two-component response regulator compare
Pf6N2E2_4113 -1.1 -1.8 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_453 -1.1 -2.6 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_2217 -1.1 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1283 -1.1 -1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2007 -1.1 -2.3 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_2201 -1.1 -3.0 Transmembrane regulator protein PrtR compare
Pf6N2E2_114 -1.1 -2.5 Polysaccharide biosynthesis protein compare
Pf6N2E2_5816 -1.0 -1.1 Smr domain protein compare
Pf6N2E2_3839 -1.0 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_5950 -1.0 -2.3 Phosphate:acyl-ACP acyltransferase PlsX compare
Pf6N2E2_4077 -1.0 -2.6 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5733 -1.0 -3.8 NLP/P60 family protein compare
Pf6N2E2_924 -1.0 -1.2 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_3323 -1.0 -2.2 hypothetical protein compare
Pf6N2E2_58 -1.0 -1.5 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2258 -1.0 -4.6 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_4120 -1.0 -6.4 Trk system potassium uptake protein TrkA compare
Pf6N2E2_1912 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_1781 -1.0 -3.1 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_5869 -1.0 -1.8 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_2402 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_4153 -1.0 -1.9 Sensory box histidine kinase compare
Pf6N2E2_2012 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_5430 -1.0 -2.9 Transglycosylase, Slt family compare
Pf6N2E2_5520 -1.0 -3.5 Sensory box histidine kinase compare
Pf6N2E2_2114 -1.0 -1.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3875 -1.0 -1.0 FIG00953324: hypothetical protein compare
Pf6N2E2_1633 -1.0 -2.5 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_5527 -1.0 -1.5 Cold shock protein CspC compare
Pf6N2E2_5746 -1.0 -1.2 Cobalamin synthase compare
Pf6N2E2_43 -1.0 -3.0 Histidine permease YuiF compare
Pf6N2E2_1347 -1.0 -2.0 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_788 -1.0 -2.8 hypothetical protein compare
Pf6N2E2_1502 -1.0 -1.6 Two-component system regulatory protein compare
Pf6N2E2_4591 -1.0 -2.7 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_827 -1.0 -1.5 probable dioxygenase compare
Pf6N2E2_642 -1.0 -2.0 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_75 -0.9 -2.4 Colicin V production protein compare
Pf6N2E2_2794 -0.9 -1.6 putative membrane protein compare
Pf6N2E2_816 -0.9 -2.5 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_3132 -0.9 -1.7 FIG00954548: hypothetical protein compare
Pf6N2E2_4360 -0.9 -5.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_1352 -0.9 -1.3 Cation transport ATPase compare
Pf6N2E2_2061 -0.9 -1.3 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_282 -0.9 -1.0 GNAT family acetyltransferase YjcF compare
Pf6N2E2_4372 -0.9 -2.1 FIG00460773: hypothetical protein compare
Pf6N2E2_4732 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_533 -0.9 -1.9 Na(+) H(+) antiporter subunit G compare
Pf6N2E2_2887 -0.9 -1.7 Aldose 1-epimerase compare
Pf6N2E2_1424 -0.9 -1.5 transcriptional regulator, TetR family compare
Pf6N2E2_2098 -0.9 -2.2 heme uptake regulator compare
Pf6N2E2_493 -0.9 -2.1 YD repeat protein compare
Pf6N2E2_2827 -0.9 -0.8 hypothetical protein compare
Pf6N2E2_3698 -0.9 -2.2 Nicotinamidase family protein YcaC compare
Pf6N2E2_5743 -0.9 -2.2 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_396 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_4889 -0.9 -4.8 Putative transport protein compare
Pf6N2E2_1625 -0.9 -1.7 Ferric reductase (1.6.99.14) compare
Pf6N2E2_1040 -0.9 -1.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4974 -0.9 -4.0 DedA protein compare
Pf6N2E2_4486 -0.9 -3.4 Glycine cleavage system H protein compare
Pf6N2E2_3219 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_2825 -0.9 -3.0 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_1453 -0.9 -2.8 Xylose activator XylR (AraC family) compare
Pf6N2E2_1797 -0.9 -1.5 Transcriptional regulator compare
Pf6N2E2_1641 -0.9 -1.9 Chemotaxis protein CheC -- inhibitor of MCP methylation compare
Pf6N2E2_4635 -0.8 -3.6 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_280 -0.8 -2.1 hypothetical protein compare
Pf6N2E2_3569 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_3257 -0.8 -1.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_552 -0.8 -1.8 Uncharacterized protein ImpF compare
Pf6N2E2_2885 -0.8 -2.9 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_1173 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_4091 -0.8 -5.2 Oligopeptidase A (EC 3.4.24.70) compare
Pf6N2E2_2582 -0.8 -1.1 Flagellar motor switch protein FliN compare
Pf6N2E2_6063 -0.8 -3.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_819 -0.8 -1.3 Response regulator compare
Pf6N2E2_5993 -0.8 -1.0 FIG00957412: hypothetical protein compare
Pf6N2E2_4416 -0.8 -0.7 Tyrosine recombinase XerC compare
Pf6N2E2_2357 -0.8 -2.2 Invasion protein iagA compare
Pf6N2E2_555 -0.8 -2.1 Uncharacterized protein ImpB compare
Pf6N2E2_3384 -0.8 -1.9 Predicted L-lactate dehydrogenase, hypothetical protein subunit YkgG compare
Pf6N2E2_504 -0.8 -1.6 DNA-binding response regulator compare
Pf6N2E2_5300 -0.8 -5.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_304 -0.8 -1.4 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_2281 -0.8 -1.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_1966 -0.8 -1.1 SAM-dependent methyltransferases compare
Pf6N2E2_1484 -0.8 -1.8 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Pf6N2E2_2778 -0.8 -1.8 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1157 -0.8 -2.1 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_2386 -0.8 -1.5 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_5720 -0.8 -3.2 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_1683 -0.8 -1.2 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_3619 -0.8 -3.7 NAD(P)HX epimerase / NAD(P)HX dehydratase compare
Pf6N2E2_1959 -0.8 -2.1 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_923 -0.8 -1.1 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_1758 -0.8 -0.9 Transcriptional regulator, MarR family compare
Pf6N2E2_5425 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_59 -0.8 -2.6 16 kDa heat shock protein A compare
Pf6N2E2_3240 -0.8 -0.7 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_5988 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_817 -0.8 -3.6 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_5678 -0.8 -3.5 hypothetical protein compare
Pf6N2E2_4050 -0.7 -1.9 FIG00953718: hypothetical protein compare
Pf6N2E2_2284 -0.7 -1.3 Cell division inhibitor-related protein compare
Pf6N2E2_193 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_3349 -0.7 -0.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3870 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_5910 -0.7 -1.3 Flp pilus assembly protein RcpC/CpaB compare
Pf6N2E2_6100 -0.7 -1.0 tRNA-Val-TAC compare
Pf6N2E2_1288 -0.7 -1.1 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_4494 -0.7 -1.9 Adenylate cyclase (EC 4.6.1.1) compare


Specific Phenotypes

For 6 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Cobalt chloride hexahydrate across organisms