Experiment set13IT090 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
SMc01220 -5.2 -3.6 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00302 -5.2 -1.8 hypothetical protein compare
SMc02850 -4.7 -3.1 DNA polymerase I compare
SMc02077 -4.6 -3.5 exodeoxyribonuclease III protein compare
SMc02485 -4.5 -1.9 signal peptide protein compare
SMc03100 -4.4 -1.9 hypothetical protein compare
SMc02641 -4.1 -3.9 UDP-glucose 6-dehydrogenase compare
SMc04024 -4.0 -8.6 membrane-bound lytic murein transglycosylase compare
SMc02232 -4.0 -2.2 hypothetical protein compare
SMa0789 -4.0 -2.6 GntR family transcriptional regulator compare
SMc02055 -3.9 -1.9 phytoene synthase compare
SMc00006 -3.7 -2.8 hypothetical protein compare
SMc00987 -3.7 -2.7 hypothetical protein compare
SMc00334 -3.6 -1.6 cytidylate kinase compare
SMc03127 -3.6 -1.8 ABC transporter permease compare
SMc01242 -3.6 -2.4 signal peptide protein compare
SMc00963 -3.6 -1.9 hypothetical protein compare
SMc02510 -3.5 -0.9 ferric uptake regulation protein compare
SMc00815 -3.5 -1.5 inosine 5'-monophosphate dehydrogenase compare
SMc00451 -3.5 -9.1 processing protease compare
SM_b22023 -3.5 -1.7 molecular chaperone GroES compare
SMc02144 -3.4 -2.2 phosphate ABC transporter permease compare
SMc00928 -3.4 -1.2 signal peptide protein compare
SMc00073 -3.4 -1.9 hypothetical protein compare
SMc01361 -3.3 -2.2 dihydroorotase compare
SMc00876 -3.2 -4.7 ATP-binding MRP protein compare
SMc02868 -3.2 -4.6 multidrug efflux system protein compare
SMc03978 -3.2 -2.2 transketolase compare
SMc00013 -3.2 -2.2 cytochrome C oxidase subunit III transmembrane protein compare
SMc02234 -3.2 -1.7 hypothetical protein compare
SMc02640 -3.1 -4.8 UDP-glucuronic acid epimerase compare
SMc01342 -3.1 -3.0 hypothetical protein compare
SMc01845 -3.1 -1.7 transglycosylase transmembrane protein compare
SMa2253 -3.1 -1.5 hypothetical protein compare
SMc02121 -3.1 -1.0 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc01258 -3.0 -5.9 hypothetical protein compare
SMc00010 -3.0 -1.7 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc00914 -3.0 -2.5 oxidoreductase compare
SMc00189 -3.0 -2.9 cytochrome C1 protein compare
SMc00450 -2.9 -1.4 protoheme IX farnesyltransferase compare
SMc00419 -2.9 -3.9 glutathione synthetase compare
SMc02858 -2.9 -0.7 chaperone protein DnaJ compare
SMc04296 -2.9 -0.9 cell division protein FtsZ compare
SMc00982 -2.8 -4.6 dioxygenase compare
SMc03763 -2.8 -1.9 cytosine-specific methyltransferase compare
SM_b20953 -2.8 -1.2 hypothetical protein compare
SMc02683 -2.7 -2.1 hypothetical protein compare
SMa1052 -2.7 -1.5 hypothetical protein compare
SMc00085 -2.7 -4.8 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMa0955 -2.7 -1.9 GntR family transcriptional regulator compare
SMc02897 -2.6 -1.9 cytochrome C transmembrane protein compare
SMc00329 -2.6 -2.2 iron response regulator protein compare
SMc00580 -2.6 -3.4 4-hydroxythreonine-4-phosphate dehydrogenase compare
SMa1933 -2.6 -2.7 LysR family transcriptional regulator compare
SMc03967 -2.5 -1.1 Holliday junction resolvase compare
SMc01471 -2.5 -2.7 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02778 -2.5 -0.9 hydroxyacid aldolase compare
SMc00689 -2.5 -3.5 lipoprotein compare
SMc02425 -2.4 -3.2 transcriptional regulator compare
SMc02615 -2.4 -1.8 signal peptide protein compare
SMc02149 -2.4 -1.4 hypothetical protein compare
SMc01568 -2.4 -0.8 hypothetical protein compare
SMc00169 -2.4 -11.7 malic enzyme compare
SMc00821 -2.4 -1.2 hypothetical protein compare
SMc01178 -2.4 -1.4 multidrug transmembrane resistance signal peptide protein compare
SM_b21096 -2.3 -1.2 amino acid transporter ABC transporter ATP-binding protein compare
SMc02495 -2.3 -1.2 translaldolase compare
SMc00461 -2.3 -1.2 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SM_b21480 -2.3 -1.3 hypothetical protein compare
SMc03242 -2.3 -2.8 GTP-binding protein compare
SMc00427 -2.3 -1.2 peptide chain release factor RF-3 protein compare
SMc01969 -2.2 -5.7 hypothetical protein compare
SMc04246 -2.1 -1.7 transmembrane signal peptide protein compare
SMc02246 -2.1 -0.5 hypothetical protein compare
SMc01147 -2.1 -1.5 coproporphyrinogen III oxidase compare
SMc03746 -2.1 -2.0 hypothetical protein compare
SMc02362 -2.1 -1.6 cytochrome c-type biogenesis protein CcmE compare
SMc02833 -2.1 -1.7 penicillin-insensitive murein endopeptidase compare
SMa0771 -2.1 -1.6 hypothetical protein compare
SMc02561 -2.1 -2.1 hypothetical protein compare
SMc02856 -2.0 -9.2 penicillin-binding protein compare
SMc04085 -2.0 -2.7 hypothetical protein compare
SMa0776 -2.0 -1.6 TRm23b IS ATP-binding protein compare
SMc01280 -2.0 -1.3 protease compare
SMc04385 -2.0 -3.4 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc03070 -2.0 -4.2 glucose-6-phosphate 1-dehydrogenase compare
SMc00188 -2.0 -5.2 cytochrome B transmembrane protein compare
SMc02143 -1.9 -3.2 phosphate ABC transporter permease compare
SMc00404 -1.9 -1.0 hypothetical protein compare
SMc00579 -1.9 -4.6 dimethyladenosine transferase compare
SMc01723 -1.9 -2.0 hypothetical protein compare
SMc00012 -1.9 -1.1 cytochrome C oxidase assembly protein compare
SMc00355 -1.9 -3.8 hypothetical protein compare
SMc00187 -1.9 -2.0 ubiquinol-cytochrome C reductase iron-sulfur subunit protein compare
SM_b20897 -1.9 -1.7 hypothetical protein compare
SMc03051 -1.8 -2.2 flagellar biosynthesis repressor FlbT compare
SMc02248 -1.8 -1.8 transcriptional regulator compare
SMc02861 -1.8 -2.2 phosphate transporter compare
SMc03850 -1.8 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc01850 -1.8 -1.8 hypothetical protein compare
SMa0740 -1.8 -1.6 hypothetical protein compare
SMc03924 -1.8 -7.2 glycogen synthase compare
SM_b20880 -1.8 -4.8 ATP-dependent RNA helicase compare
SM_b20143 -1.8 -1.0 oligopeptide ABC transporter permease compare
SM_b20427 -1.8 -2.2 amino acid ABC transporter ATP-binding protein compare
SMc03996 -1.8 -2.8 thiamine-phosphate pyrophosphorylase compare
SM_b20105 -1.7 -1.3 transcriptional regulator compare
SM_b20323 -1.7 -0.8 transcriptional regulator compare
SM_b21443 -1.7 -2.0 hypothetical protein compare
SMc04169 -1.7 -6.6 transcriptional regulator compare
SMa1770 -1.7 -1.1 hypothetical protein compare
SM_b20413 -1.7 -0.9 hypothetical protein compare
SMc02145 -1.7 -0.6 signal peptide protein compare
SMc00067 -1.6 -5.2 outer-membranne lipoprotein compare
SM_b21174 -1.6 -2.7 phosphate uptake ABC transporter permease compare
SMc02844 -1.6 -1.1 transcriptional regulator compare
SMc00003 -1.5 -1.9 chaperone protein compare
SMa1239 -1.5 -1.7 NapD component of periplasmic nitrate reductase compare
SMc00791 -1.5 -1.2 hypothetical protein compare
SMc00602 -1.5 -3.7 excinuclease ABC subunit C compare
SMc01718 -1.5 -5.2 hypothetical protein compare
SMc01472 -1.5 -1.0 50S ribosomal protein L11 methyltransferase compare
SMc00088 -1.5 -0.9 hypothetical protein compare
SMc00351 -1.5 -0.9 hypothetical protein compare
SMc02102 -1.5 -2.2 hypothetical protein compare
SMc02853 -1.5 -2.3 hypothetical protein compare
SMc01337 -1.5 -0.8 hypothetical protein compare
SMc02046 -1.5 -1.4 hypothetical protein compare
SMc01360 -1.5 -1.5 aspartate carbamoyltransferase catalytic subunit compare
SMc01880 -1.4 -1.6 pantoate--beta-alanine ligase compare
SMa1243 -1.4 -2.9 Azu1 pseudoazurin compare
SMc02155 -1.4 -5.9 hypothetical protein compare
SMa1099 -1.4 -1.7 CycB1 cytochrome c-552 precursor compare
SMc00937 -1.4 -5.5 TRK system potassium uptake transmembrane protein compare
SMc04221 -1.4 -1.8 hypothetical protein compare
SMc01881 -1.4 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc00009 -1.4 -3.3 cytochrome C oxidase subunit II protein compare
SMc01578 -1.4 -4.7 aspartate aminotransferase compare
SM_b20083 -1.4 -1.4 hypothetical protein compare
SMc00941 -1.4 -1.2 hypothetical protein compare
SMc00557 -1.4 -3.3 alanine racemase compare
SMa0575 -1.4 -1.4 hypothetical protein compare
SMa2020 -1.4 -2.9 Transcriptional regulator compare
SM_b20055 -1.4 -1.2 transcriptional regulator compare
SMc01974 -1.4 -2.3 transcriptional regulator compare
SMc01644 -1.4 -2.4 ABC transporter permease compare
SMc02141 -1.4 -1.9 phosphate transporter PhoU compare
SMc02753 -1.4 -0.7 PTS system transporter subunit IIA compare
SMa0809 -1.3 -3.5 hypothetical protein compare
SMc00640 -1.3 -4.6 phosphoserine aminotransferase compare
SM_b21509 -1.3 -1.6 plasmid stability protein compare
SMc01091 -1.3 -1.2 hypothetical protein compare
SMc00762 -1.3 -6.0 glutamine synthetase compare
SMc01208 -1.3 -1.9 peptidyl-prolyl cis-trans isomerase B protein compare
SMc01204 -1.3 -5.4 transmembrane oxidoreductase compare
SMc01700 -1.3 -3.0 peptidyl-prolyl cis-trans isomerase A compare
SMc03987 -1.3 -4.8 transport transmembrane protein compare
SMc02318 -1.3 -1.9 hypothetical protein compare
SMc01144 -1.3 -1.2 ribonuclease PH compare
SMc04232 -1.3 -1.1 glycine rich transmembrane protein compare
SMc03128 -1.3 -2.3 ABC transporter permease compare
SMc01569 -1.3 -0.4 carbamoyl phosphate synthase small subunit compare
SMc00492 -1.3 -0.5 hypothetical protein compare
SMa2215 -1.2 -1.8 GntR family transcriptional regulator compare
SMc00556 -1.2 -2.8 DNA repair protein RadA compare
SMa1921 -1.2 -1.5 hypothetical protein compare
SMc02058 -1.2 -1.0 YAJC protein compare
SMc02114 -1.2 -1.5 hypothetical protein compare
SMc00347 -1.2 -1.9 nucleoside diphosphate kinase regulator compare
SM_b21365 -1.2 -1.9 hypothetical protein compare
SMc02558 -1.2 -3.1 hypothetical protein compare
SMc03028 -1.2 -1.5 flagellar basal body rod protein FlgC compare
SMc01800 -1.2 -0.6 cytochrome C oxidase assembly transmembrane protein compare
SMc01801 -1.2 -1.0 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
SMa5018 -1.2 -1.4 hypothetical protein compare
SMc01119 -1.2 -1.0 hypothetical protein compare
SMa5010 -1.2 -0.6 hypothetical protein compare
SMc01422 -1.2 -2.6 hypothetical protein compare
SMc02451 -1.2 -0.7 hypothetical protein compare
SMc01606 -1.2 -3.0 permease compare
SMc04216 -1.2 -2.3 hypothetical protein compare
SMc02544 -1.1 -0.6 hypothetical protein compare
SMc01607 -1.1 -3.8 permease compare
SMa0450 -1.1 -1.1 hypothetical protein compare
SMc02989 -1.1 -1.5 hypothetical protein compare
SMc03899 -1.1 -0.6 hypothetical protein compare
SMc03973 -1.1 -4.1 hypothetical protein compare
SMc02309 -1.1 -3.4 arsenate reductase compare
SMc02738 -1.1 -4.1 glycine betaine transport system permease ABC transporter protein compare
SMc01464 -1.1 -2.2 hypothetical protein compare
SMc03258 -1.1 -2.8 transcriptional regulator compare
SMc01608 -1.1 -1.6 ABC transporter ATP-binding protein compare
SMc01557 -1.1 -1.9 signal peptide protein compare
SM_b20267 -1.1 -1.3 D-amino acid dehydrogenase compare
SMc01041 -1.1 -1.8 NIFR3-like protein compare
SMa1452 -1.1 -2.4 hypothetical protein compare
SMc02894 -1.1 -1.2 hypothetical protein compare
SMc01556 -1.1 -1.1 hypothetical protein compare
SMc03862 -1.1 -2.8 hypothetical protein compare
SMc02166 -1.1 -3.6 dihydroorotase compare


Specific Phenotypes

For 3 genes in this experiment