Experiment set13IT089 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with no fungus

200 most important genes:

  gene name fitness t score description  
SMa0789 -4.1 -2.7 GntR family transcriptional regulator compare
SMc02640 -4.0 -4.8 UDP-glucuronic acid epimerase compare
SMc00876 -4.0 -6.1 ATP-binding MRP protein compare
SMc02149 -3.8 -1.4 hypothetical protein compare
SMc00334 -3.7 -1.7 cytidylate kinase compare
SMc03127 -3.7 -1.9 ABC transporter permease compare
SMc00815 -3.7 -1.6 inosine 5'-monophosphate dehydrogenase compare
SMc01220 -3.6 -6.4 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc02510 -3.6 -0.9 ferric uptake regulation protein compare
SMc00492 -3.6 -0.9 hypothetical protein compare
SMc02144 -3.5 -2.3 phosphate ABC transporter permease compare
SMc02833 -3.5 -1.8 penicillin-insensitive murein endopeptidase compare
SMc02084 -3.4 -0.9 biopolymer transport transmembrane protein compare
SMc03978 -3.3 -2.3 transketolase compare
SMc00191 -3.3 -1.9 hypothetical protein compare
SMc01258 -3.3 -7.0 hypothetical protein compare
SMc02234 -3.3 -1.9 hypothetical protein compare
SMc00012 -3.2 -1.7 cytochrome C oxidase assembly protein compare
SMc02485 -3.2 -1.9 signal peptide protein compare
SMc00010 -3.2 -1.8 cytochrome C oxidase polypeptide I transmembrane protein compare
SMc03100 -3.2 -1.9 hypothetical protein compare
SMc01361 -3.1 -3.0 dihydroorotase compare
SMc02362 -3.1 -1.8 cytochrome c-type biogenesis protein CcmE compare
SMc02055 -3.0 -2.1 phytoene synthase compare
SMc02850 -3.0 -3.0 DNA polymerase I compare
SMc04024 -3.0 -6.9 membrane-bound lytic murein transglycosylase compare
SMc01183 -2.9 -1.0 LexA repressor compare
SMc03763 -2.9 -2.0 cytosine-specific methyltransferase compare
SMc04296 -2.9 -1.0 cell division protein FtsZ compare
SMc02858 -2.9 -0.7 chaperone protein DnaJ compare
SMc02683 -2.9 -2.5 hypothetical protein compare
SMc00073 -2.8 -2.2 hypothetical protein compare
SMc02077 -2.7 -3.1 exodeoxyribonuclease III protein compare
SMc03242 -2.7 -3.1 GTP-binding protein compare
SMc02867 -2.7 -2.6 multidrug-efflux system transmembrane protein compare
SMc00963 -2.7 -2.8 hypothetical protein compare
SMc02050 -2.6 -4.0 trigger factor compare
SMc01242 -2.6 -2.6 signal peptide protein compare
SMc00928 -2.6 -1.3 signal peptide protein compare
SMc00302 -2.6 -2.5 hypothetical protein compare
SMc00450 -2.6 -1.8 protoheme IX farnesyltransferase compare
SMc00329 -2.6 -2.6 iron response regulator protein compare
SMc02641 -2.6 -3.7 UDP-glucose 6-dehydrogenase compare
SMc02232 -2.6 -1.9 hypothetical protein compare
SMc01568 -2.4 -0.8 hypothetical protein compare
SMc00013 -2.4 -1.5 cytochrome C oxidase subunit III transmembrane protein compare
SM_b20880 -2.4 -6.1 ATP-dependent RNA helicase compare
SMc00006 -2.4 -3.0 hypothetical protein compare
SMc03229 -2.3 -1.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc00427 -2.3 -1.3 peptide chain release factor RF-3 protein compare
SMc01360 -2.2 -1.8 aspartate carbamoyltransferase catalytic subunit compare
SMc01208 -2.2 -2.6 peptidyl-prolyl cis-trans isomerase B protein compare
SMc01850 -2.2 -3.0 hypothetical protein compare
SMc00169 -2.2 -12.0 malic enzyme compare
SMc00451 -2.1 -6.7 processing protease compare
SMc04330 -2.1 -1.8 trimethylamine methyltransferase compare
SMc02102 -2.1 -2.9 hypothetical protein compare
SMc00760 -2.1 -5.0 recombinase A compare
SMc00067 -2.1 -7.5 outer-membranne lipoprotein compare
SMc00355 -2.1 -4.0 hypothetical protein compare
SMc04385 -2.1 -5.1 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc00419 -2.0 -4.1 glutathione synthetase compare
SMc04085 -2.0 -4.2 hypothetical protein compare
SMc01800 -2.0 -1.0 cytochrome C oxidase assembly transmembrane protein compare
SMc02897 -2.0 -2.3 cytochrome C transmembrane protein compare
SMc00859 -2.0 -1.8 hypothetical protein compare
SMc02543 -2.0 -3.3 hypothetical protein compare
SMc01342 -2.0 -3.7 hypothetical protein compare
SMc01969 -2.0 -4.8 hypothetical protein compare
SMc01147 -2.0 -1.9 coproporphyrinogen III oxidase compare
SMc03996 -1.9 -3.9 thiamine-phosphate pyrophosphorylase compare
SMc00689 -1.9 -4.9 lipoprotein compare
SMc01471 -1.9 -2.5 cytochrome C oxidase assembly factor transmembrane protein compare
SMc02868 -1.9 -3.5 multidrug efflux system protein compare
SMc02495 -1.8 -1.1 translaldolase compare
SMc01012 -1.8 -1.3 hypothetical protein compare
SMc03070 -1.8 -5.6 glucose-6-phosphate 1-dehydrogenase compare
SMc00981 -1.8 -4.5 ferredoxin protein compare
SMc02114 -1.8 -2.4 hypothetical protein compare
SMc00466 -1.8 -3.9 hypothetical protein compare
SMc02141 -1.7 -2.0 phosphate transporter PhoU compare
SMc00085 -1.7 -4.9 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMc02145 -1.7 -0.6 signal peptide protein compare
SMc01930 -1.7 -2.0 hypothetical protein compare
SM_b21511 -1.6 -1.4 plasmid stability protein compare
SMc01880 -1.6 -1.6 pantoate--beta-alanine ligase compare
SMc04169 -1.6 -8.2 transcriptional regulator compare
SMc03236 -1.6 -1.6 glutamine amidotransferase compare
SMc01578 -1.6 -7.7 aspartate aminotransferase compare
SMa1323 -1.5 -2.1 Transcription regulator compare
SMc01119 -1.5 -1.5 hypothetical protein compare
SM_b20563 -1.5 -2.5 hypothetical protein compare
SMc02739 -1.5 -3.6 glycine betaine transport ATP-binding ABC transporter protein compare
SMc00511 -1.5 -2.3 D-ribulose-5-phosphate 3-epimerase compare
SM_b20026 -1.5 -1.2 hypothetical protein compare
SMc02582 -1.5 -2.8 hypothetical protein compare
SMc02755 -1.5 -4.7 S-adenosyl-L-homocysteine hydrolase compare
SMa0748 -1.5 -1.5 MucR family transcriptional regulator compare
SMc02856 -1.5 -5.9 penicillin-binding protein compare
SMc01144 -1.4 -2.6 ribonuclease PH compare
SMc00691 -1.4 -2.7 site-specific tyrosine recombinase XerD compare
SM_b20897 -1.4 -1.6 hypothetical protein compare
SMa0955 -1.4 -1.5 GntR family transcriptional regulator compare
SM_b20701 -1.4 -0.9 hypothetical protein compare
SMc03834 -1.4 -0.9 pterin-4-alpha-carbinolamine dehydratase compare
SMc02155 -1.4 -5.8 hypothetical protein compare
SMc02142 -1.4 -2.4 phosphate transporter ATP-binding protein compare
SMc01206 -1.4 -1.4 queuine tRNA-ribosyltransferase compare
SMc03924 -1.4 -5.1 glycogen synthase compare
SMc00914 -1.4 -2.1 oxidoreductase compare
SMc02484 -1.3 -3.2 amino acid efflux transmembrane protein compare
SMc02694 -1.3 -1.0 ATP-dependent Clp protease adaptor compare
SMc00982 -1.3 -3.2 dioxygenase compare
SMc01146 -1.3 -1.4 deoxyribonucleotide triphosphate pyrophosphatase compare
SM_b20452 -1.3 -2.5 hypothetical protein compare
SMc01461 -1.3 -3.2 DNA helicase II protein compare
SM_b21035 -1.3 -4.0 hypothetical protein compare
SM_b20822 -1.3 -3.1 cell surface polysaccharide export ABC-2 transporter permease, close relative to wzm1Y20833 compare
SMc02425 -1.3 -3.2 transcriptional regulator compare
SM_b20307 -1.3 -0.6 dihydroxyacetone kinase compare
SM_b21174 -1.3 -2.6 phosphate uptake ABC transporter permease compare
SMc01845 -1.3 -1.1 transglycosylase transmembrane protein compare
SMc02853 -1.3 -3.2 hypothetical protein compare
SMc00987 -1.3 -1.7 hypothetical protein compare
SMc02866 -1.3 -2.2 transcriptional regulator compare
SMa0645 -1.3 -1.3 hypothetical protein compare
SMc00045 -1.2 -1.6 cytochrome C signal peptide protein compare
SMc04242 -1.2 -1.0 zinc uptake regulation protein compare
SMc01881 -1.2 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
SMc03140 -1.2 -2.7 transcriptional regulator compare
SMc03973 -1.2 -5.3 hypothetical protein compare
SMc02561 -1.2 -1.6 hypothetical protein compare
SMc02894 -1.2 -1.5 hypothetical protein compare
SM_b20086 -1.2 -1.3 hypothetical protein compare
SM_b20942 -1.2 -3.4 UDP glucose 4-epimerase compare
SMc01700 -1.2 -3.2 peptidyl-prolyl cis-trans isomerase A compare
SMc00017 -1.2 -1.0 homoserine kinase compare
SMc02724 -1.2 -1.4 hypothetical protein compare
SMc00937 -1.2 -6.5 TRK system potassium uptake transmembrane protein compare
SMc00602 -1.2 -3.1 excinuclease ABC subunit C compare
SMa0223 -1.2 -5.5 TetR family transcriptional regulator compare
SMc04432 -1.2 -1.6 hypothetical protein compare
SMc02164 -1.1 -1.7 fructokinase compare
SMc03850 -1.1 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc00802 -1.1 -0.8 hypothetical protein compare
SM_b20089 -1.1 -1.4 hypothetical protein compare
SMa0674 -1.1 -0.8 hypothetical protein compare
SMc01608 -1.1 -2.3 ABC transporter ATP-binding protein compare
SMa0514 -1.1 -2.9 gluconate kinase compare
SMc02121 -1.1 -0.9 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc00009 -1.1 -3.6 cytochrome C oxidase subunit II protein compare
SMa2020 -1.1 -3.4 Transcriptional regulator compare
SM_b21212 -1.1 -1.7 hypothetical protein compare
SM_b20083 -1.1 -1.8 hypothetical protein compare
SMc02143 -1.1 -2.8 phosphate ABC transporter permease compare
SMc01968 -1.1 -4.1 transcriptional regulator compare
SMc02165 -1.1 -3.4 orotate phosphoribosyltransferase compare
SMc00600 -1.1 -1.5 molybdopterin MPT converting factor subunit 1 compare
SMc01939 -1.1 -0.8 urease subunit beta compare
SMc00189 -1.1 -2.4 cytochrome C1 protein compare
SMc01813 -1.1 -4.1 hypothetical protein compare
SMc01718 -1.1 -4.2 hypothetical protein compare
SMc03967 -1.0 -0.7 Holliday junction resolvase compare
SMc02909 -1.0 -0.7 transglycosylase transmembrane protein compare
SMc02107 -1.0 -0.6 hypothetical protein compare
SM_b22005 -1.0 -1.0 hypothetical protein compare
SM_b20862 -1.0 -1.4 hypothetical protein compare
SMc03053 -1.0 -0.9 flagellar biosynthesis protein FliQ compare
SMc02488 -1.0 -2.6 hypothetical protein compare
SMc01984 -1.0 -2.1 cytochrome-C oxidase transmembrane protein compare
SMc01957 -1.0 -2.4 hypothetical protein compare
SMc03987 -1.0 -3.8 transport transmembrane protein compare
SMc03258 -1.0 -4.4 transcriptional regulator compare
SMa1310 -1.0 -1.9 VirB7-like protein compare
SMc00555 -1.0 -0.7 colicin V production transmembrane protein compare
SMc00019 -1.0 -1.6 hypothetical protein compare
SMa2219 -1.0 -2.9 decarboxylase compare
SMc03124 -1.0 -2.2 periplasmic binding ABC transporter protein compare
SMc00640 -1.0 -4.3 phosphoserine aminotransferase compare
SMa1898 -1.0 -3.3 hypothetical protein compare
SMc01204 -1.0 -4.2 transmembrane oxidoreductase compare
SMc01853 -1.0 -2.4 hypothetical protein compare
SMc00566 -1.0 -1.6 hypothetical protein compare
SM_b21665 -1.0 -2.7 hypothetical protein compare
SMc02544 -1.0 -0.6 hypothetical protein compare
SMc02693 -1.0 -0.9 peptidyl-tRNA hydrolase compare
SM_b21175 -1.0 -2.2 phosphate uptake ABC transporter permease compare
SMc02140 -1.0 -0.6 phosphate regulon transcriptional regulatory protein compare
SMa0121 -1.0 -1.4 hypothetical protein compare
SMc04453 -1.0 -0.8 hypothetical protein compare
SMc00088 -1.0 -0.8 hypothetical protein compare
SM_b20294 -1.0 -0.8 transcriptional regulator NanR compare
SMc02319 -0.9 -1.8 hypothetical protein compare
SMc01235 -0.9 -6.0 excinuclease ABC subunit A compare
SM_b21412 -0.9 -1.5 hypothetical protein compare
SM_b20811 -0.9 -1.8 hypothetical protein compare
SMc01770 -0.9 -1.2 serine hydroxymethyltransferase compare
SMc00188 -0.9 -3.4 cytochrome B transmembrane protein compare
SMc01607 -0.9 -3.2 permease compare
SMc01961 -0.9 -2.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment