Experiment set13IT089 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with no fungus

200 most detrimental genes:

  gene name fitness t score description  
SM_b20948 +2.7 2.5 glucosyltransferase compare
SMc01222 +2.3 11.6 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc00150 +2.2 19.6 hypothetical protein compare
SM_b20021 +2.0 1.9 transcriptional regulator compare
SMc01099 +2.0 5.7 tRNA pseudouridine synthase A compare
SMc03900 +2.0 14.3 cyclic beta-1,2-glucan ABc transporter compare
SMc02497 +1.9 4.8 hypothetical protein compare
SMc01907 +1.7 10.0 hypothetical protein compare
SMc04382 +1.7 15.3 beta-(1,2)-glucan production associated transmembrane protein compare
SM_b20043 +1.7 9.6 hypothetical protein compare
SMc01232 +1.6 3.8 hypothetical protein compare
SMc00838 +1.6 7.5 hypothetical protein compare
SMc00505 +1.6 3.4 hypothetical protein compare
SMc00241 +1.6 1.5 transcriptional regulator compare
SMc00166 +1.5 1.4 oxidoreductase NAD protein compare
SMa1223 +1.5 1.9 hypothetical protein compare
SM_b21374 +1.5 3.4 tagatose kinase (EC 2.7.1.101) (from data) compare
SMc02713 +1.5 2.2 RNA polymerase sigma-E factor (sigma-24) protein compare
SMc03855 +1.5 3.8 hypothetical protein compare
SMc05009 +1.5 2.3 nodulation protein NolR compare
SMc01120 +1.5 4.2 hypothetical protein compare
SMc04094 +1.4 3.2 hypothetical protein compare
SMa1597 +1.4 3.2 Pilus assembly chaperone compare
SMc02904 +1.4 2.7 hypothetical protein compare
SMc00588 +1.4 2.4 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
SM_b20613 +1.3 7.2 C4-dicarboxylate transport transcriptional regulator compare
SMc00856 +1.3 1.1 hypothetical protein compare
SMc01223 +1.3 3.2 transcriptional regulator compare
SMa2289 +1.3 1.3 hypothetical protein compare
SMa5036 +1.3 2.4 hypothetical protein compare
SMc00061 +1.3 2.7 hypothetical protein compare
SMc01769 +1.3 8.6 hypothetical protein compare
SMc00239 +1.3 0.9 hypothetical protein compare
SM_b21170 +1.2 4.1 guanylate kinase compare
SMc00295 +1.2 1.0 hypothetical protein compare
SMc00131 +1.2 6.3 transcriptional regulator compare
SM_b21491 +1.2 6.9 hypothetical protein compare
SMc00761 +1.2 7.8 oxidoreductase compare
SM_b20834 +1.2 5.7 surface saccharide synthesis protein compare
SMc02449 +1.2 1.5 acetyltransferase compare
SMc00458 +1.1 7.5 transcriptional regulator compare
SMc00665 +1.1 3.2 hypothetical protein compare
SMc02273 +1.1 9.3 fatty acid synthase transmembrane protein compare
SMc02820 +1.1 3.2 pilus assembly protein compare
SMc02490 +1.1 5.7 hypothetical protein compare
SMa0740 +1.1 1.7 hypothetical protein compare
SM_b21397 +1.1 2.6 hypothetical protein compare
SMa2081 +1.1 2.9 ABC transporter ATP-binding protein compare
SMc02434 +1.1 1.1 hypothetical protein compare
SM_b21359 +1.1 1.7 LysR family transcriptional regulator compare
SMc03123 +1.1 7.0 transcriptional regulator compare
SMc03072 +1.1 1.1 hypothetical protein compare
SMc01615 +1.1 3.8 transcriptional regulator compare
SMa1702 +1.0 3.1 hypothetical protein compare
SMc00494 +1.0 1.5 phosphoribosylformylglycinamidine synthase subunit PurS compare
SM_b21329 +1.0 1.4 hypothetical protein compare
SMc01933 +1.0 1.1 hypothetical protein compare
SM_b21296 +1.0 1.3 hypothetical protein compare
SMc00361 +1.0 2.8 hypothetical protein compare
SM_b21486 +1.0 3.2 metabolite transport protein compare
SMc02716 +1.0 2.0 hypothetical protein compare
SMa2151 +1.0 1.6 DNA-binding protein compare
SMc02854 +1.0 4.6 signal peptide protein compare
SMc03836 +1.0 1.2 acyl-CoA thioesterase i protein compare
SMc04220 +1.0 1.0 transcriptional regulator compare
SMc00974 +1.0 2.1 RNA methyltransferase compare
SMc01107 +1.0 4.1 hypothetical protein compare
SMc01439 +1.0 2.4 hypothetical protein compare
SMc00091 +1.0 5.4 sulfate adenylyltransferase compare
SM_b21268 +0.9 4.4 hypothetical protein compare
SMc03180 +0.9 4.1 monovalent cation/H+ antiporter subunit C compare
SMc04389 +0.9 1.2 hydroxypyruvate reductase compare
SMa0909 +0.9 1.7 hypothetical protein compare
SMc01454 +0.9 5.2 hypothetical protein compare
SMa1058 +0.9 1.3 hypothetical protein compare
SMc02373 +0.9 0.9 hypothetical protein compare
SMc00976 +0.9 2.2 enoyl-CoA hydratase compare
SMa2053 +0.9 1.9 MocE-like protein compare
SMc04161 +0.9 3.5 hypothetical protein compare
SMc01595 +0.9 2.8 sensor histidine kinase transmembrane protein compare
SMc00081 +0.9 1.4 hypothetical protein compare
SMc03961 +0.9 4.2 sulfolipid (UDP-sulfoquinovose) biosynthesis protein compare
SM_b20293 +0.9 0.9 hypothetical protein compare
SMa2029 +0.9 2.5 amidohydrolase compare
SMa2168 +0.9 1.4 tRNA-Met compare
SMc03949 +0.9 1.6 nitrogen regulatory protein compare
SM_b21085 +0.9 2.5 hypothetical protein compare
SM_b20075 +0.9 1.3 hypothetical protein compare
SMc04048 +0.9 2.8 cytochrome c protein compare
SMc04081 +0.9 4.5 glycosyl transferase (sulfolipid biosynthesis) protein compare
SMc00647 +0.9 1.6 ribosomal large subunit pseudouridine synthase compare
SMc02450 +0.9 1.8 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
SM_b20261 +0.8 1.6 malate dehydrogenase compare
SMc02684 +0.8 3.5 hydrolase/peptidase compare
SMa1427 +0.8 1.6 ABC transporter substrate-binding protein compare
SM_b21266 +0.8 2.5 hypothetical protein compare
SMa1533 +0.8 2.1 NuoA2 NADH I chain A compare
SM_b20117 +0.8 1.6 sugar transferase compare
SMa1398 +0.8 1.2 3-ketoacyl-ACP reductase compare
SM_b21159 +0.8 1.0 short-chain dehydrogenase compare
SMc02272 +0.8 4.4 acyl-transferase transferase compare
SMa0833 +0.8 1.1 hypothetical protein compare
SM_b20750 +0.8 1.0 dehydrogenase compare
SM_b21252 +0.8 5.2 glycosyltransferase compare
SMa0753 +0.8 0.4 hypothetical protein compare
SMc03184 +0.8 1.0 PH adaptation potassium efflux system G transmembrane protein compare
SMc01440 +0.8 3.1 hydrolase serine protease transmembrane protein compare
SMa1430 +0.8 1.6 Dehydrogenase, Zn-dependent compare
SMc00053 +0.8 0.5 monovalent cation/H+ antiporter subunit C compare
SMc00129 +0.8 3.7 sensor histidine kinase compare
SMc02874 +0.8 2.1 N-acetylmuramic acid 6-phosphate etherase compare
SMc02269 +0.8 4.2 capsular polysaccharide biosynthesis/export protein compare
SM_b20302 +0.8 1.1 hypothetical protein compare
SMa0222 +0.8 1.3 GntR family transcriptional regulator compare
SM_b21441 +0.8 1.8 inosine-5'-monophosphate dehydrogenase compare
SMc03831 +0.8 3.0 hypothetical protein compare
SMc05011 +0.8 1.9 bacteriophage DNA-binding transcription regulator compare
SMa0085 +0.8 3.1 dehydrogenase compare
SMa0834 +0.8 2.9 FdxB ferredoxin III compare
SMc00482 +0.8 2.9 hypothetical protein compare
SMa0210 +0.8 2.0 hypothetical protein compare
SM_b20516 +0.8 2.2 response regulator protein compare
SMa0087 +0.8 0.8 hypothetical protein compare
SMc02778 +0.8 0.7 hydroxyacid aldolase compare
SMc01024 +0.8 0.8 preprotein translocase subunit SecG compare
SMc02041 +0.8 2.1 short chain dehydrogenase compare
SMc02826 +0.8 1.3 transcriptional regulator compare
SMc03963 +0.8 3.6 sulfolipid biosynthesis protein compare
SM_b21265 +0.8 4.6 glycosyltransferase compare
SM_b20397 +0.8 1.5 oxidoreductase compare
SMc01973 +0.8 2.6 glutamine synthetase compare
SM_b21256 +0.8 4.5 nucleotide sugar oxidase compare
SMc02201 +0.8 1.7 hypothetical protein compare
SMa1099 +0.8 1.2 CycB1 cytochrome c-552 precursor compare
SM_b20935 +0.8 2.1 transcriptional regulator compare
SM_b21115 +0.8 1.7 response regulator protein compare
SMa5018 +0.8 1.1 hypothetical protein compare
SMa0126 +0.8 1.1 CspA8 Cold shock family protein compare
SMc01351 +0.8 1.6 hypothetical protein compare
SM_b20011 +0.8 1.8 hypothetical protein compare
SMc01131 +0.8 1.1 hypothetical protein compare
SMc00618 +0.7 5.1 polyphosphate kinase compare
SMc03245 +0.7 1.8 amidase compare
SMc00998 +0.7 4.8 signal peptide protein compare
SMc01428 +0.7 1.6 cold shock transcription regulator protein compare
SMc01916 +0.7 1.5 signal peptide protein compare
SMc01114 +0.7 1.6 phoH-like protein compare
SMc01468 +0.7 1.0 chemotaxis protein compare
SMa1554 +0.7 1.5 chemotaxis protein compare
SMc01714 +0.7 2.8 hypothetical protein compare
SM_b20040 +0.7 1.6 hypothetical protein compare
SMc02503 +0.7 4.0 hypothetical protein compare
SMc04020 +0.7 1.5 hypothetical protein compare
SMc01176 +0.7 1.3 hypothetical protein compare
SMa0854 +0.7 1.6 3-ketoacyl-ACP reductase compare
SM_b20916 +0.7 2.7 hypothetical protein compare
SMc00247 +0.7 4.2 phosphatidylcholine synthase compare
SMa0638 +0.7 1.4 hypothetical protein compare
SMc00143 +0.7 0.8 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
SMc03111 +0.7 2.9 mannose 6-phosphate isomerase (EC 5.3.1.8) (from data) compare
SMc02787 +0.7 1.1 hypothetical protein compare
SMa0349 +0.7 1.7 hypothetical protein compare
SM_b20128 +0.7 1.5 deaminase compare
SMc01614 +0.7 1.8 triosephosphate isomerase compare
SM_b21002 +0.7 3.2 methionine aminopeptidase compare
SMc04004 +0.7 2.2 signal peptide protein compare
SMa0810 +0.7 1.9 nitrogen fixation protein FixU compare
SM_b21452 +0.7 1.0 hypothetical protein compare
SMc01613 +0.7 2.1 ribose-5-phosphate isomerase B compare
SMc01181 +0.7 1.3 transmembrane protein compare
SMc03781 +0.7 1.8 rRNA large subunit methyltransferase compare
SM_b21695 +0.7 1.3 hypothetical protein compare
SMa1017 +0.7 1.1 hypothetical protein compare
SM_b21684 +0.7 2.0 hypothetical protein compare
SMa0281 +0.7 1.4 MerR family transcriptional regulator compare
SMc02045 +0.7 1.7 oxidoreductase compare
SMa5033 +0.7 0.5 hypothetical protein compare
SMa1361 +0.7 1.2 hypothetical protein compare
SMa1630 +0.7 1.0 hypothetical protein compare
SMa2014 +0.7 2.3 transcriptional regulator compare
SMc03932 +0.7 1.9 sarcosine oxidase subunit delta compare
SMc01548 +0.7 2.0 hypothetical protein compare
SMc00108 +0.7 1.8 acetyltransferase compare
SM_b21192 +0.7 3.4 fructose-1,6-bisphosphate aldolase compare
SMa0226 +0.6 1.9 dehydrogenase compare
SM_b20320 +0.6 0.6 TRAP-type large permease component compare
SMc02156 +0.6 1.7 hypothetical protein compare
SM_b20475 +0.6 2.3 hypothetical protein compare
SMa1787 +0.6 2.2 transposase, fragment compare
SMa0106 +0.6 1.1 ABC transporter permease compare
SMa0869 +0.6 2.0 acyltransferase compare
SM_b21580 +0.6 0.6 hypothetical protein compare
SMc00320 +0.6 2.4 ribosome-binding factor A compare
SMc01034 +0.6 1.7 hypothetical protein compare
SMc01706 +0.6 2.7 signal peptide protein compare
SM_b20698 +0.6 1.7 transporter compare
SMc04391 +0.6 1.0 3-ketoacyl-ACP reductase compare
SMc04344 +0.6 1.2 signal peptide protein compare
SMa1979 +0.6 2.0 LysR family transcriptional regulator compare
SMa0291 +0.6 0.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment