Experiment set13IT088 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 1.5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4071 -4.2 -4.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_43 -3.9 -2.7 Histidine permease YuiF compare
Pf6N2E2_760 -3.3 -11.2 Na+/H+ antiporter NhaB compare
Pf6N2E2_5679 -2.9 -4.8 hypothetical protein compare
Pf6N2E2_4797 -2.6 -1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2129 -2.6 -3.6 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4999 -2.4 -6.3 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_5006 -2.4 -5.9 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4987 -2.2 -1.2 MaoC-like domain protein compare
Pf6N2E2_2574 -2.1 -2.3 Flagellar synthesis regulator FleN compare
Pf6N2E2_42 -2.0 -3.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_1534 -1.9 -1.5 Probable transmembrane protein compare
Pf6N2E2_3206 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_1032 -1.8 -1.9 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5739 -1.8 -1.7 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3461 -1.8 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_6045 -1.8 -2.1 hypothetical protein compare
Pf6N2E2_3351 -1.8 -3.7 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2938 -1.7 -3.3 Outer membrane lipoprotein compare
Pf6N2E2_2681 -1.7 -1.9 3-phosphoglycerate kinase compare
Pf6N2E2_2536 -1.7 -1.9 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_5430 -1.6 -3.9 Transglycosylase, Slt family compare
Pf6N2E2_3617 -1.6 -2.6 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5261 -1.6 -0.8 FIG00956983: hypothetical protein compare
Pf6N2E2_423 -1.6 -1.0 Putative phosphatase YfbT compare
Pf6N2E2_3696 -1.6 -1.2 hypothetical protein compare
Pf6N2E2_3908 -1.6 -3.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4057 -1.6 -1.4 lipoprotein, putative compare
Pf6N2E2_5342 -1.6 -2.0 21 kDa hemolysin precursor compare
Pf6N2E2_2211 -1.6 -6.1 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_4418 -1.5 -0.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3574 -1.5 -9.0 Mannose-6-phosphate isomerase (EC 5.3.1.8) conserved
Pf6N2E2_4155 -1.5 -6.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2518 -1.5 -2.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_1083 -1.5 -1.5 hypothetical protein compare
Pf6N2E2_2510 -1.4 -2.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5927 -1.4 -4.3 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_895 -1.4 -3.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_5544 -1.4 -5.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_367 -1.4 -2.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4399 -1.3 -4.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_2825 -1.3 -4.5 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_4381 -1.3 -3.8 hypothetical protein compare
Pf6N2E2_5245 -1.3 -3.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2252 -1.3 -3.5 NreA-like protein compare
Pf6N2E2_5711 -1.3 -4.7 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_923 -1.3 -1.8 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_1959 -1.3 -3.2 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_4372 -1.2 -2.6 FIG00460773: hypothetical protein compare
Pf6N2E2_919 -1.2 -1.5 FIG00954373: hypothetical protein compare
Pf6N2E2_1625 -1.2 -2.4 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2519 -1.2 -1.1 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5678 -1.2 -3.9 hypothetical protein compare
Pf6N2E2_3834 -1.2 -3.4 Lipoprotein NlpD compare
Pf6N2E2_2218 -1.2 -2.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_241 -1.2 -1.6 hypothetical protein compare
Pf6N2E2_4636 -1.2 -4.7 periplasmic binding protein, putative compare
Pf6N2E2_3607 -1.2 -5.8 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5902 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_1723 -1.2 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3039 -1.2 -3.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5843 -1.2 -1.5 hypothetical protein compare
Pf6N2E2_1705 -1.2 -1.6 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4612 -1.2 -3.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3612 -1.1 -2.1 HflK protein compare
Pf6N2E2_621 -1.1 -3.1 TPR domain protein in aerotolerance operon compare
Pf6N2E2_4415 -1.1 -2.3 Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase compare
Pf6N2E2_1626 -1.1 -4.7 Putative ATP-binding component of a transport system compare
Pf6N2E2_622 -1.1 -2.2 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_238 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_2367 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_304 -1.1 -2.2 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_4593 -1.1 -2.6 Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB compare
Pf6N2E2_1797 -1.1 -2.0 Transcriptional regulator compare
Pf6N2E2_4075 -1.1 -5.5 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_4413 -1.1 -6.4 FIG004064: hypothetical protein compare
Pf6N2E2_672 -1.1 -2.1 ABC-type polar amino acid transport system, ATPase component compare
Pf6N2E2_5703 -1.1 -2.5 outer membrane protein H1 compare
Pf6N2E2_1305 -1.0 -1.9 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_2513 -1.0 -2.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_16 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1371 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_4647 -1.0 -6.9 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_3323 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_2864 -1.0 -2.1 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_3237 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_3569 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_1136 -1.0 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2788 -1.0 -2.0 Transcriptional regulator, AsnC family compare
Pf6N2E2_3161 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_3055 -1.0 -2.0 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_2870 -1.0 -1.6 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_2694 -1.0 -4.1 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_2065 -1.0 -1.5 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_2010 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3820 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_1040 -1.0 -1.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1288 -1.0 -1.5 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1168 -1.0 -2.4 Transposase compare
Pf6N2E2_4494 -1.0 -2.6 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3872 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1834 -1.0 -1.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1361 -0.9 -2.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf6N2E2_88 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_955 -0.9 -2.3 FIG00953508: hypothetical protein compare
Pf6N2E2_2984 -0.9 -1.0 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_3040 -0.9 -3.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_1545 -0.9 -1.4 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_5262 -0.9 -1.1 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_40 -0.9 -2.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2852 -0.9 -4.5 GGDEF domain/EAL domain protein compare
Pf6N2E2_2059 -0.9 -1.3 ChlI component of cobalt chelatase involved in B12 biosynthesis compare
Pf6N2E2_4077 -0.9 -2.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1776 -0.9 -1.5 Chemotaxis protein CheD compare
Pf6N2E2_37 -0.9 -1.3 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3666 -0.9 -1.2 InaA protein compare
Pf6N2E2_4974 -0.9 -3.8 DedA protein compare
Pf6N2E2_2487 -0.9 -0.9 FIG00956090: hypothetical protein compare
Pf6N2E2_4206 -0.9 -1.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_1343 -0.9 -2.2 Transcriptional regulator compare
Pf6N2E2_1661 -0.9 -4.3 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_1540 -0.9 -2.9 FIG00953528: hypothetical protein compare
Pf6N2E2_4773 -0.9 -0.9 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1492 -0.9 -1.8 No significant database matches compare
Pf6N2E2_84 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_3247 -0.9 -3.5 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) compare
Pf6N2E2_4047 -0.9 -3.2 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_1683 -0.9 -1.9 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_1033 -0.9 -1.9 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components compare
Pf6N2E2_719 -0.9 -1.1 Molybdenum cofactor biosynthesis protein MoaB compare
Pf6N2E2_659 -0.8 -1.4 Transcriptional regulatory protein ompR compare
Pf6N2E2_2418 -0.8 -1.5 DNA-binding response regulator, LuxR family compare
Pf6N2E2_1497 -0.8 -2.1 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_4607 -0.8 -2.3 Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR compare
Pf6N2E2_5758 -0.8 -1.2 FIG00957314: hypothetical protein compare
Pf6N2E2_3747 -0.8 -2.6 hypothetical protein compare
Pf6N2E2_5520 -0.8 -3.1 Sensory box histidine kinase compare
Pf6N2E2_6093 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_5785 -0.8 -1.7 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_4743 -0.8 -0.7 hypothetical protein compare
Pf6N2E2_2189 -0.8 -2.3 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_186 -0.8 -3.0 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_2258 -0.8 -4.0 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_913 -0.8 -2.5 FIG00958137: hypothetical protein compare
Pf6N2E2_2674 -0.8 -0.9 FIG00953856: hypothetical protein compare
Pf6N2E2_402 -0.8 -2.6 Carbonic anhydrase (EC 4.2.1.1) compare
Pf6N2E2_473 -0.8 -2.5 putative cytochrome p450 oxidoreductase compare
Pf6N2E2_2586 -0.8 -0.7 Hpt domain protein compare
Pf6N2E2_3252 -0.8 -3.5 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4120 -0.8 -5.4 Trk system potassium uptake protein TrkA compare
Pf6N2E2_440 -0.8 -2.9 FIG00954920: hypothetical protein compare
Pf6N2E2_5017 -0.8 -2.9 Phosphate starvation-inducible protein PhoH, predicted ATPase compare
Pf6N2E2_2330 -0.8 -2.7 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_4139 -0.8 -6.8 Integral membrane protein TerC compare
Pf6N2E2_49 -0.8 -2.5 FIG00967200: hypothetical protein compare
Pf6N2E2_1325 -0.8 -1.1 FIG00954773: hypothetical protein compare
Pf6N2E2_902 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_6035 -0.8 -1.7 alpha/beta hydrolase fold compare
Pf6N2E2_4897 -0.8 -2.2 hypothetical protein compare
Pf6N2E2_2007 -0.8 -1.6 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_1238 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_2114 -0.8 -1.4 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_2124 -0.8 -1.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_443 -0.8 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1894 -0.8 -2.4 hypothetical protein compare
Pf6N2E2_634 -0.7 -4.3 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_145 -0.7 -6.3 putative exported protein compare
Pf6N2E2_4388 -0.7 -5.0 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_5714 -0.7 -1.2 Flavoprotein WrbA compare
Pf6N2E2_624 -0.7 -1.9 hypothetical protein PA3071 compare
Pf6N2E2_48 -0.7 -1.5 FIG00955661: hypothetical protein compare
Pf6N2E2_2063 -0.7 -2.3 Predicted cobalt transporter CbtA compare
Pf6N2E2_5626 -0.7 -3.0 Hypothetical YciO protein, TsaC/YrdC paralog compare
Pf6N2E2_4416 -0.7 -0.8 Tyrosine recombinase XerC compare
Pf6N2E2_1283 -0.7 -1.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5536 -0.7 -0.9 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5840 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_1423 -0.7 -2.4 Gamma-aminobutyrate permease compare
Pf6N2E2_1551 -0.7 -1.9 Transcriptional regulator compare
Pf6N2E2_779 -0.7 -2.1 transporter, putative compare
Pf6N2E2_2985 -0.7 -1.7 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_3190 -0.7 -2.1 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_2447 -0.7 -2.7 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_1366 -0.7 -1.9 FIG002465: BNR repeat protein compare
Pf6N2E2_3782 -0.7 -2.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1314 -0.7 -2.3 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
Pf6N2E2_2509 -0.7 -1.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5754 -0.7 -4.3 Long-chain fatty acid transport protein compare
Pf6N2E2_3876 -0.7 -1.2 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_479 -0.7 -2.0 Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase (EC 2.3.1.168) (from data) compare
Pf6N2E2_3532 -0.7 -2.2 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_5496 -0.7 -1.6 FIG00953991: hypothetical protein compare
Pf6N2E2_4908 -0.7 -3.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5001 -0.7 -0.5 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4128 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_3516 -0.7 -1.6 Probable transmembrane protein compare
Pf6N2E2_1862 -0.7 -1.9 Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) compare
Pf6N2E2_4733 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_4382 -0.7 -3.5 FIG00953403: hypothetical protein compare
Pf6N2E2_1199 -0.7 -1.6 hypothetical protein compare


Specific Phenotypes

For 11 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms