Experiment set13IT087 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 1 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -4.3 -4.2 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_43 -3.2 -4.3 Histidine permease YuiF compare
Pf6N2E2_3574 -2.6 -10.8 Mannose-6-phosphate isomerase (EC 5.3.1.8) conserved
Pf6N2E2_3611 -2.4 -1.7 HflC protein compare
Pf6N2E2_5679 -2.3 -4.0 hypothetical protein compare
Pf6N2E2_4071 -2.3 -4.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2064 -2.2 -2.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_1625 -2.2 -2.8 Ferric reductase (1.6.99.14) compare
Pf6N2E2_1040 -2.1 -1.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2264 -2.0 -1.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2217 -1.9 -3.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_2681 -1.9 -1.7 3-phosphoglycerate kinase compare
Pf6N2E2_946 -1.9 -1.7 Transcriptional regulator, LysR family compare
Pf6N2E2_3351 -1.8 -3.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3885 -1.8 -1.2 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_1633 -1.8 -2.6 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_4153 -1.8 -4.2 Sensory box histidine kinase compare
Pf6N2E2_3461 -1.7 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_6045 -1.7 -1.9 hypothetical protein compare
Pf6N2E2_827 -1.6 -2.0 probable dioxygenase compare
Pf6N2E2_4797 -1.6 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_2646 -1.6 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_922 -1.6 -2.4 FIG00794167: hypothetical protein compare
Pf6N2E2_1776 -1.6 -2.2 Chemotaxis protein CheD compare
Pf6N2E2_3661 -1.6 -5.5 hypothetical protein compare
Pf6N2E2_3908 -1.5 -3.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3040 -1.5 -5.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3713 -1.5 -2.5 Acyl carrier protein compare
Pf6N2E2_2261 -1.5 -3.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_4047 -1.4 -4.3 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_1634 -1.4 -3.6 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_813 -1.4 -1.9 Response regulator compare
Pf6N2E2_1636 -1.4 -4.7 Ferrichrome-iron receptor compare
Pf6N2E2_698 -1.4 -2.2 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_3612 -1.4 -2.1 HflK protein compare
Pf6N2E2_4162 -1.4 -2.6 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_1676 -1.4 -1.3 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_737 -1.4 -1.7 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_2074 -1.3 -1.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_2367 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_5527 -1.3 -1.8 Cold shock protein CspC compare
Pf6N2E2_5425 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_6140 -1.3 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2503 -1.3 -1.7 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_2282 -1.3 -1.9 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_3226 -1.2 -2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_469 -1.2 -1.8 lipoprotein, putative compare
Pf6N2E2_3321 -1.2 -4.5 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_5711 -1.2 -4.5 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_1464 -1.2 -2.7 hypothetical protein compare
Pf6N2E2_5720 -1.2 -4.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_2675 -1.2 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_2519 -1.2 -1.0 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5346 -1.1 -1.8 rRNA small subunit methyltransferase I compare
Pf6N2E2_3132 -1.1 -2.3 FIG00954548: hypothetical protein compare
Pf6N2E2_5342 -1.1 -1.7 21 kDa hemolysin precursor compare
Pf6N2E2_1024 -1.1 -2.1 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
Pf6N2E2_442 -1.1 -2.8 FIG00962345: hypothetical protein compare
Pf6N2E2_5766 -1.1 -1.2 Quaternary ammonium compound-resistance protein SugE compare
Pf6N2E2_1635 -1.1 -2.9 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_5768 -1.1 -2.3 DNA recombination-dependent growth factor C compare
Pf6N2E2_2065 -1.1 -1.6 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_831 -1.1 -1.8 Ketoacyl reductase hetN (EC 1.3.1.-) compare
Pf6N2E2_1626 -1.1 -4.7 Putative ATP-binding component of a transport system compare
Pf6N2E2_2251 -1.1 -2.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) conserved
Pf6N2E2_962 -1.1 -1.2 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_5841 -1.1 -1.0 GlcG protein compare
Pf6N2E2_4453 -1.1 -7.3 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_2574 -1.0 -1.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_4541 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_1492 -1.0 -2.1 No significant database matches compare
Pf6N2E2_2068 -1.0 -2.4 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_1885 -1.0 -2.0 Transcriptional regulator, AraC family compare
Pf6N2E2_99 -1.0 -2.1 hypothetical protein compare
Pf6N2E2_4974 -1.0 -4.5 DedA protein compare
Pf6N2E2_1522 -1.0 -2.6 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_623 -1.0 -0.8 FIG00954674: hypothetical protein compare
Pf6N2E2_1215 -1.0 -1.9 probable membrane protein YPO2362 compare
Pf6N2E2_3875 -1.0 -1.1 FIG00953324: hypothetical protein compare
Pf6N2E2_5210 -1.0 -2.7 Possible carboxymuconolactone decarboxylase family protein (EC 4.1.1.44) compare
Pf6N2E2_204 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_5646 -1.0 -1.2 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5049 -1.0 -1.3 acetyltransferase, GNAT family compare
Pf6N2E2_2518 -1.0 -1.0 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4025 -1.0 -1.7 hypothetical protein compare
Pf6N2E2_5678 -1.0 -3.5 hypothetical protein compare
Pf6N2E2_5428 -1.0 -3.6 DNA recombination and repair protein RecO compare
Pf6N2E2_4072 -1.0 -3.5 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3079 -1.0 -4.3 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_4599 -0.9 -1.4 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_5955 -0.9 -2.2 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_1288 -0.9 -1.4 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1652 -0.9 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4993 -0.9 -1.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_1495 -0.9 -3.0 Glutamate transport membrane-spanning protein compare
Pf6N2E2_1249 -0.9 -1.8 Transcriptional regulator, AraC family compare
Pf6N2E2_817 -0.9 -4.4 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_1031 -0.9 -1.9 Alkanesulfonates transport system permease protein compare
Pf6N2E2_88 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_3161 -0.9 -2.4 hypothetical protein compare
Pf6N2E2_746 -0.9 -0.8 FIG00958097: hypothetical protein compare
Pf6N2E2_3829 -0.9 -2.4 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_1671 -0.9 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_5705 -0.9 -2.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5987 -0.9 -3.2 OmpA family protein compare
Pf6N2E2_4352 -0.9 -0.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3339 -0.9 -4.3 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Pf6N2E2_2732 -0.9 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_1804 -0.9 -2.6 Immune-responsive protein 1 compare
Pf6N2E2_3190 -0.9 -3.2 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_3569 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_1312 -0.9 -1.5 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_1665 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_1188 -0.9 -1.9 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf6N2E2_1156 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_855 -0.9 -1.4 Transcriptional regulator, IclR family compare
Pf6N2E2_5468 -0.9 -1.3 Nudix hydrolase family protein PA3470 compare
Pf6N2E2_5430 -0.9 -2.8 Transglycosylase, Slt family compare
Pf6N2E2_34 -0.9 -2.5 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_5723 -0.9 -4.2 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_4305 -0.9 -0.9 FIG00959590: hypothetical protein compare
Pf6N2E2_638 -0.9 -1.4 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_5207 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_3516 -0.8 -1.8 Probable transmembrane protein compare
Pf6N2E2_927 -0.8 -1.7 (AJ250023) putative polyketide synthase compare
Pf6N2E2_3252 -0.8 -3.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3475 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_2825 -0.8 -3.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_5898 -0.8 -2.2 Integral membrane protein compare
Pf6N2E2_3095 -0.8 -0.8 hypothetical protein compare
Pf6N2E2_2656 -0.8 -1.9 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_919 -0.8 -1.1 FIG00954373: hypothetical protein compare
Pf6N2E2_600 -0.8 -1.4 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases compare
Pf6N2E2_3641 -0.8 -1.6 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2487 -0.8 -0.8 FIG00956090: hypothetical protein compare
Pf6N2E2_5703 -0.8 -1.9 outer membrane protein H1 compare
Pf6N2E2_1116 -0.8 -0.7 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_3199 -0.8 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_4447 -0.8 -5.9 Cytochrome c family protein conserved
Pf6N2E2_5394 -0.8 -2.3 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_367 -0.8 -1.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_639 -0.8 -1.8 FIG01285020: hypothetical protein compare
Pf6N2E2_476 -0.8 -1.3 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2312 -0.8 -0.6 Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1) compare
Pf6N2E2_2218 -0.8 -1.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_2178 -0.8 -2.8 FIG00960144: hypothetical protein compare
Pf6N2E2_3264 -0.8 -3.7 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_122 -0.8 -1.3 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2306 -0.8 -2.4 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5087 -0.8 -2.0 Transcription elongation factor GreB-related protein compare
Pf6N2E2_3695 -0.8 -2.4 Helix-turn-helix motif compare
Pf6N2E2_1437 -0.8 -1.9 Acyl-CoA dehydrogenase family protein compare
Pf6N2E2_2256 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_848 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_4612 -0.8 -2.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4417 -0.8 -2.5 Protein of unknown function DUF484 compare
Pf6N2E2_502 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_4615 -0.8 -1.2 type IV pili signal transduction protein PilI compare
Pf6N2E2_2073 -0.8 -3.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3085 -0.8 -1.0 FIG00954614: hypothetical protein compare
Pf6N2E2_6035 -0.8 -1.1 alpha/beta hydrolase fold compare
Pf6N2E2_331 -0.8 -1.6 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_5669 -0.8 -3.4 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_5640 -0.8 -1.0 FIG00955597: hypothetical protein compare
Pf6N2E2_280 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_2262 -0.7 -1.6 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf6N2E2_4372 -0.7 -1.9 FIG00460773: hypothetical protein compare
Pf6N2E2_3534 -0.7 -0.8 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_971 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_3532 -0.7 -2.3 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_1246 -0.7 -1.1 FIG00961372: hypothetical protein compare
Pf6N2E2_48 -0.7 -1.8 FIG00955661: hypothetical protein compare
Pf6N2E2_3060 -0.7 -2.0 Outer membrane protein H precursor compare
Pf6N2E2_1632 -0.7 -1.6 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_4276 -0.7 -2.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4074 -0.7 -5.9 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_2750 -0.7 -3.1 Putative permease PerM (= YfgO) compare
Pf6N2E2_328 -0.7 -1.8 hypothetical protein compare
Pf6N2E2_963 -0.7 -2.2 probable exported protein STY4558 compare
Pf6N2E2_2746 -0.7 -2.0 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_3039 -0.7 -4.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5884 -0.7 -3.6 Sensor histidine kinase compare
Pf6N2E2_3744 -0.7 -1.6 General secretion pathway protein F compare
Pf6N2E2_3251 -0.7 -3.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_33 -0.7 -1.6 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3947 -0.7 -1.1 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_4399 -0.7 -2.8 GGDEF domain/EAL domain protein compare
Pf6N2E2_2022 -0.7 -1.1 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_3830 -0.7 -2.0 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_114 -0.7 -1.9 Polysaccharide biosynthesis protein compare
Pf6N2E2_4075 -0.7 -3.6 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_443 -0.7 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2978 -0.7 -2.8 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase compare
Pf6N2E2_3337 -0.7 -3.1 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) compare
Pf6N2E2_1656 -0.7 -0.8 hypothetical protein compare
Pf6N2E2_2985 -0.7 -1.4 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_2012 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_351 -0.7 -2.4 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2323 -0.7 -0.9 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3270 -0.7 -2.1 Hypothetical ATP-binding protein UPF0042, contains P-loop compare


Specific Phenotypes

For 2 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms