Experiment set13IT086 for Sinorhizobium meliloti 1021

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Group: agar plate interaction
Media: LB
Culturing: Smeli_ML6a, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 17-Aug-21
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 11 genes in this experiment

SEED Subsystems

Subsystem	#Specific
ABC transporter oligopeptide (TC 3.A.1.5.1)	1
Choline and Betaine Uptake and Betaine Biosynthesis	1
Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis	1
Histidine Degradation	1
Phosphate metabolism	1
Sex pheromones in Enterococcus faecalis and other Firmicutes	1
cAMP signaling in bacteria	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Glutamate metabolism
• Arginine and proline metabolism
• Histidine metabolism
• Glyoxylate and dicarboxylate metabolism
• Nitrogen metabolism

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
L-glutamine biosynthesis I	1	1	1
ammonia assimilation cycle I	2	2	1
ammonia assimilation cycle II	2	1	1
ammonia assimilation cycle III	3	3	1
superpathway of ammonia assimilation (plants)	3	2	1
L-aspartate degradation II (aerobic)	3	1	1
L-aspartate degradation III (anaerobic)	3	1	1
L-histidine degradation II	5	5	1
L-glutamate and L-glutamine biosynthesis	7	5	1
L-arginine biosynthesis II (acetyl cycle)	10	10	1