Experiment set13IT084 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc01280 -4.8 -2.2 protease compare
SMc04330 -4.6 -2.8 trimethylamine methyltransferase compare
SMc02485 -4.5 -2.0 signal peptide protein compare
SMc02753 -4.4 -1.2 PTS system transporter subunit IIA compare
SMc00302 -4.2 -2.3 hypothetical protein compare
SMc02850 -4.0 -3.6 DNA polymerase I compare
SMc02640 -3.8 -4.6 UDP-glucuronic acid epimerase compare
SMa0955 -3.8 -2.1 GntR family transcriptional regulator compare
SMc00334 -3.6 -1.7 cytidylate kinase compare
SMc03053 -3.6 -1.4 flagellar biosynthesis protein FliQ compare
SMc04024 -3.6 -8.9 membrane-bound lytic murein transglycosylase compare
SMc01119 -3.5 -1.9 hypothetical protein compare
SMa1921 -3.3 -2.5 hypothetical protein compare
SMc03242 -3.3 -3.1 GTP-binding protein compare
SMc03978 -3.2 -2.2 transketolase compare
SMc02362 -3.0 -1.8 cytochrome c-type biogenesis protein CcmE compare
SMc00451 -3.0 -7.7 processing protease compare
SMc00461 -2.9 -1.5 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SMc02858 -2.9 -0.8 chaperone protein DnaJ compare
SMc04296 -2.9 -1.0 cell division protein FtsZ compare
SMc01007 -2.8 -1.5 hypothetical protein compare
SMc02867 -2.8 -1.9 multidrug-efflux system transmembrane protein compare
SMc01974 -2.8 -3.7 transcriptional regulator compare
SMc03763 -2.8 -1.9 cytosine-specific methyltransferase compare
SMc02232 -2.8 -2.4 hypothetical protein compare
SMc00419 -2.7 -4.5 glutathione synthetase compare
SMc00053 -2.7 -0.7 monovalent cation/H+ antiporter subunit C compare
SMc01207 -2.6 -2.6 S-adenosylmethionine--tRNA ribosyltransferase-isomerase compare
SMc01342 -2.6 -4.3 hypothetical protein compare
SMc00928 -2.5 -1.3 signal peptide protein compare
SMc02868 -2.5 -4.7 multidrug efflux system protein compare
SMc00689 -2.4 -3.6 lipoprotein compare
SMc03863 -2.4 -3.1 50S ribosomal protein L19 compare
SMc02306 -2.4 -1.3 hypothetical protein compare
SMa1570 -2.4 -1.1 PilA2 pilus assembly protein compare
SMa0789 -2.3 -2.8 GntR family transcriptional regulator compare
SMc00802 -2.3 -1.2 hypothetical protein compare
SM_b20563 -2.3 -2.2 hypothetical protein compare
SMc01187 -2.2 -1.4 rare lipoprotein A compare
SMc01258 -2.2 -4.6 hypothetical protein compare
SMc03100 -2.2 -1.6 hypothetical protein compare
SMc00709 -2.2 -2.2 hypothetical protein compare
SMc01147 -2.1 -1.4 coproporphyrinogen III oxidase compare
SMc00013 -2.1 -1.8 cytochrome C oxidase subunit III transmembrane protein compare
SMc01575 -2.1 -9.0 hypothetical protein compare
SM_b21467 -2.1 -2.0 hypothetical protein compare
SMa1639 -2.0 -1.5 hypothetical protein compare
SMc02144 -2.0 -2.7 phosphate ABC transporter permease compare
SMc03836 -2.0 -1.0 acyl-CoA thioesterase i protein compare
SMc03979 -2.0 -1.8 glyceraldehyde-3-phosphate dehydrogenase compare
SMc02149 -2.0 -1.4 hypothetical protein compare
SMc01347 -2.0 -2.7 hypothetical protein compare
SM_b20942 -1.9 -4.7 UDP glucose 4-epimerase compare
SMc00987 -1.9 -1.9 hypothetical protein compare
SM_b20752 -1.9 -4.2 3-hydroxyisobutyryl-CoA hydrolase compare
SMc01939 -1.9 -1.1 urease subunit beta compare
SMc02755 -1.9 -4.0 S-adenosyl-L-homocysteine hydrolase compare
SMc01364 -1.9 -1.0 DNA topoisomerase I compare
SM_b22023 -1.8 -1.6 molecular chaperone GroES compare
SM_b20806 -1.8 -3.9 hypothetical protein compare
SMc03850 -1.8 -0.7 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02856 -1.8 -8.4 penicillin-binding protein compare
SMc02833 -1.8 -1.6 penicillin-insensitive murein endopeptidase compare
SMc02425 -1.8 -2.8 transcriptional regulator compare
SMc04383 -1.8 -3.0 putative hydrolase, required for lysine catabolism (from data) compare
SMc01568 -1.8 -0.9 hypothetical protein compare
SMc02495 -1.8 -1.1 translaldolase compare
SMc02505 -1.7 -0.9 hypothetical protein compare
SMc01845 -1.7 -1.2 transglycosylase transmembrane protein compare
SMc00970 -1.7 -1.7 exodeoxyribonuclease VII small subunit compare
SMc00602 -1.7 -3.4 excinuclease ABC subunit C compare
SMc02145 -1.7 -0.6 signal peptide protein compare
SMc01461 -1.6 -4.0 DNA helicase II protein compare
SMc00369 -1.6 -1.1 oxidoreductase compare
SMc01206 -1.6 -1.5 queuine tRNA-ribosyltransferase compare
SMc00828 -1.6 -6.0 hypothetical protein compare
SMc00321 -1.6 -3.7 tRNA pseudouridine synthase B compare
SMc00827 -1.6 -6.1 transport transmembrane protein compare
SMc02055 -1.6 -1.3 phytoene synthase compare
SMc00576 -1.6 -2.2 hypothetical protein compare
SMc04385 -1.6 -4.4 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc01208 -1.6 -2.2 peptidyl-prolyl cis-trans isomerase B protein compare
SMc00859 -1.5 -1.8 hypothetical protein compare
SMc02114 -1.5 -2.5 hypothetical protein compare
SMa1700 -1.5 -1.6 hypothetical protein compare
SMc00712 -1.5 -1.3 hypothetical protein compare
SMc02484 -1.5 -3.3 amino acid efflux transmembrane protein compare
SMc01765 -1.5 -1.0 hypothetical protein compare
SMc04175 -1.5 -4.7 transmembrane protein compare
SMc01178 -1.5 -0.8 multidrug transmembrane resistance signal peptide protein compare
SMc02835 -1.5 -4.0 glucokinase compare
SMc01241 -1.5 -2.2 hypothetical protein compare
SMc02683 -1.4 -1.9 hypothetical protein compare
SMc01361 -1.4 -2.3 dihydroorotase compare
SMc00006 -1.4 -2.2 hypothetical protein compare
SMc03967 -1.4 -0.8 Holliday junction resolvase compare
SMc03051 -1.4 -1.6 flagellar biosynthesis repressor FlbT compare
SM_b21480 -1.4 -1.0 hypothetical protein compare
SMc00511 -1.4 -3.2 D-ribulose-5-phosphate 3-epimerase compare
SMc00466 -1.4 -1.8 hypothetical protein compare
SMc02561 -1.4 -1.1 hypothetical protein compare
SMc01235 -1.4 -6.5 excinuclease ABC subunit A compare
SMc01220 -1.4 -2.6 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc01089 -1.4 -1.1 hypothetical protein compare
SM_b21633 -1.4 -0.9 enoyl-CoA hydratase compare
SM_b20270 -1.3 -1.9 proline racemase compare
SMc00605 -1.3 -1.7 hypothetical protein compare
SMc01581 -1.3 -3.2 hypothetical protein compare
SMc04432 -1.3 -2.9 hypothetical protein compare
SMc03969 -1.3 -4.8 hypothetical protein compare
SM_b20758 -1.3 -1.6 ArsR family transcriptional regulator compare
SMc01608 -1.3 -3.2 ABC transporter ATP-binding protein compare
SMc00815 -1.3 -0.8 inosine 5'-monophosphate dehydrogenase compare
SMc00024 -1.3 -2.1 chromosome partition protein compare
SMc01850 -1.3 -1.4 hypothetical protein compare
SMc00085 -1.3 -2.8 cytochrome oxidase complex biogenesis factor transmembrane protein compare
SMa0050 -1.2 -1.6 hypothetical protein compare
SMc01472 -1.2 -0.9 50S ribosomal protein L11 methyltransferase compare
SMc02718 -1.2 -1.4 hypothetical protein compare
SMc03890 -1.2 -1.6 transcriptional regulator compare
SMc00492 -1.2 -0.5 hypothetical protein compare
SMa2020 -1.2 -3.0 Transcriptional regulator compare
SMc03124 -1.2 -2.2 periplasmic binding ABC transporter protein compare
SMc02143 -1.2 -2.9 phosphate ABC transporter permease compare
SMc04085 -1.2 -2.0 hypothetical protein compare
SMc03862 -1.2 -2.3 hypothetical protein compare
SM_b20897 -1.2 -1.4 hypothetical protein compare
SMc00247 -1.2 -6.1 phosphatidylcholine synthase compare
SMc02720 -1.2 -2.1 ATP-dependent Clp protease proteolytic subunit compare
SMc00963 -1.2 -1.2 hypothetical protein compare
SMc00760 -1.2 -2.4 recombinase A compare
SMa1765 -1.2 -0.6 hypothetical protein compare
SMc00169 -1.2 -7.7 malic enzyme compare
SMc02435 -1.2 -1.3 methyltransferase compare
SMc02140 -1.2 -0.6 phosphate regulon transcriptional regulatory protein compare
SMc02783 -1.2 -2.0 hypothetical protein compare
SMc04224 -1.2 -1.1 hypothetical protein compare
SMc03935 -1.1 -5.3 hypothetical protein compare
SMc03070 -1.1 -3.2 glucose-6-phosphate 1-dehydrogenase compare
SMc03791 -1.1 -2.9 hypothetical protein compare
SM_b20880 -1.1 -3.2 ATP-dependent RNA helicase compare
SMc01877 -1.1 -2.9 DNA repair protein compare
SMc00937 -1.1 -4.5 TRK system potassium uptake transmembrane protein compare
SMc02941 -1.1 -3.4 hypothetical protein compare
SMa1052 -1.1 -1.0 hypothetical protein compare
SMc01275 -1.1 -4.1 ribosomal large subunit pseudouridine synthase C protein compare
SMc02976 -1.1 -2.7 transcriptional regulator compare
SM_b21551 -1.1 -0.6 hypothetical protein compare
SMc02058 -1.1 -0.9 YAJC protein compare
SMc03981 -1.1 -2.1 phosphoglycerate kinase compare
SMc00355 -1.1 -2.1 hypothetical protein compare
SMc00009 -1.1 -3.1 cytochrome C oxidase subunit II protein compare
SMc02050 -1.1 -2.1 trigger factor compare
SMc02812 -1.1 -0.8 hypothetical protein compare
SMc04231 -1.1 -4.6 excinuclease ABC subunit B compare
SM_b21511 -1.1 -1.0 plasmid stability protein compare
SMc01146 -1.1 -1.3 deoxyribonucleotide triphosphate pyrophosphatase compare
SM_b20827 -1.1 -1.6 transposase compare
SMa1456 -1.1 -1.7 hypothetical protein compare
SMc04389 -1.1 -1.4 hydroxypyruvate reductase compare
SMc02313 -1.1 -2.3 hypothetical protein compare
SMa0754 -1.1 -1.5 hypothetical protein compare
SMc00019 -1.1 -1.6 hypothetical protein compare
SM_b20072 -1.1 -3.5 rhizopine binding protein compare
SMc01556 -1.0 -2.0 hypothetical protein compare
SM_b20955 -1.0 -1.5 endo-beta-1,3-1,4-glycanase compare
SMa1526 -1.0 -2.6 NuoE2 NADH I chain E compare
SMc02046 -1.0 -1.3 hypothetical protein compare
SMc00347 -1.0 -1.7 nucleoside diphosphate kinase regulator compare
SMc03289 -1.0 -1.0 hypothetical protein compare
SMc01242 -1.0 -1.7 signal peptide protein compare
SM_b21267 -1.0 -2.5 hypothetical protein compare
SMc00876 -1.0 -2.6 ATP-binding MRP protein compare
SM_b20452 -1.0 -1.2 hypothetical protein compare
SMc03973 -1.0 -3.1 hypothetical protein compare
SMc03924 -1.0 -3.5 glycogen synthase compare
SMc00974 -1.0 -1.6 RNA methyltransferase compare
SMc00981 -1.0 -2.2 ferredoxin protein compare
SM_b20273 -1.0 -2.3 hypothetical protein compare
SM_b20375 -1.0 -1.3 transcriptional regulator compare
SMa0738 -1.0 -2.2 CspA6 cold shock protein transcriptional regulator compare
SMc00017 -1.0 -0.7 homoserine kinase compare
SMc00280 -1.0 -1.8 hypothetical protein compare
SMc01644 -1.0 -1.5 ABC transporter permease compare
SMa1303 -0.9 -3.4 VirB10-like transmembrane secretion protein compare
SMc02280 -0.9 -0.6 hypothetical protein compare
SMa0543 -0.9 -0.5 hypothetical protein compare
SMc01813 -0.9 -3.6 hypothetical protein compare
SMa2219 -0.9 -1.7 decarboxylase compare
SMc01641 -0.9 -2.1 carnitinyl-CoA dehydratase compare
SM_b21401 -0.9 -1.7 hypothetical protein compare
SMc02909 -0.9 -0.6 transglycosylase transmembrane protein compare
SM_b21569 -0.9 -1.1 transcriptional regulator compare
SM_b21153 -0.9 -1.2 acetyltransferase compare
SMa1465 -0.9 -1.9 ABC transporter permease compare
SMc00383 -0.9 -2.0 glutathione S-transferase compare
SMc02077 -0.9 -1.2 exodeoxyribonuclease III protein compare
SMa0667 -0.9 -2.2 hypothetical protein compare
SM_b20357 -0.9 -1.9 histidine kinase compare
SMc00296 -0.9 -3.5 POLY3-hydroxybutyrate polymerase compare


Specific Phenotypes

For 6 genes in this experiment