Experiment set13IT083 for Sinorhizobium meliloti 1021

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
SMc03863 -5.7 -1.9 50S ribosomal protein L19 compare
SMc01363 -4.7 -1.1 hypothetical protein compare
SMc00013 -4.6 -1.9 cytochrome C oxidase subunit III transmembrane protein compare
SMc04330 -4.5 -2.4 trimethylamine methyltransferase compare
SMc01206 -4.4 -1.5 queuine tRNA-ribosyltransferase compare
SMc02753 -4.3 -1.0 PTS system transporter subunit IIA compare
SMc00689 -4.1 -6.3 lipoprotein compare
SMa1597 -3.9 -2.5 Pilus assembly chaperone compare
SMc00461 -3.9 -1.3 deoxyuridine 5'-triphosphate nucleotidohydrolase compare
SM_b20307 -3.7 -0.9 dihydroxyacetone kinase compare
SMc02510 -3.5 -0.8 ferric uptake regulation protein compare
SMa0955 -3.5 -2.0 GntR family transcriptional regulator compare
SMc00492 -3.5 -0.8 hypothetical protein compare
SMc00334 -3.5 -1.4 cytidylate kinase compare
SMc00576 -3.4 -3.5 hypothetical protein compare
SMc02084 -3.4 -0.8 biopolymer transport transmembrane protein compare
SMc00815 -3.4 -1.4 inosine 5'-monophosphate dehydrogenase compare
SMc00419 -3.4 -3.3 glutathione synthetase compare
SMc00928 -3.4 -1.1 signal peptide protein compare
SMc01242 -3.3 -2.6 signal peptide protein compare
SMc01472 -3.3 -1.1 50S ribosomal protein L11 methyltransferase compare
SMc02833 -3.2 -1.5 penicillin-insensitive murein endopeptidase compare
SMc03229 -3.1 -1.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
SMc02495 -3.1 -1.0 translaldolase compare
SMc02641 -3.1 -3.7 UDP-glucose 6-dehydrogenase compare
SMc01845 -3.1 -1.7 transglycosylase transmembrane protein compare
SMc01505 -3.0 -1.0 hypothetical protein compare
SMc01644 -3.0 -2.1 ABC transporter permease compare
SMa0734 -3.0 -2.0 hypothetical protein compare
SMc02906 -3.0 -1.0 hypothetical protein compare
SMc02362 -2.9 -1.5 cytochrome c-type biogenesis protein CcmE compare
SMc00760 -2.9 -4.0 recombinase A compare
SMc01183 -2.9 -0.9 LexA repressor compare
SMc04296 -2.9 -0.9 cell division protein FtsZ compare
SMc02338 -2.9 -1.8 periplasmic binding ABC transporter protein compare
SMc02844 -2.8 -1.3 transcriptional regulator compare
SMc02373 -2.8 -0.9 hypothetical protein compare
SMc02140 -2.8 -0.9 phosphate regulon transcriptional regulatory protein compare
SMc02858 -2.8 -0.7 chaperone protein DnaJ compare
SMc00329 -2.7 -1.9 iron response regulator protein compare
SMc02543 -2.7 -4.9 hypothetical protein compare
SMc03763 -2.7 -1.8 cytosine-specific methyltransferase compare
SMa5010 -2.7 -0.9 hypothetical protein compare
SMc02867 -2.7 -1.8 multidrug-efflux system transmembrane protein compare
SMc02640 -2.7 -4.4 UDP-glucuronic acid epimerase compare
SMc00053 -2.7 -0.6 monovalent cation/H+ antiporter subunit C compare
SMc03066 -2.7 -1.6 hypothetical protein compare
SMc03127 -2.6 -1.6 ABC transporter permease compare
SMc03050 -2.6 -1.6 flagellar biosynthesis regulatory protein FlaF compare
SMc04174 -2.6 -1.2 signal peptide protein compare
SMc01220 -2.5 -4.4 lipopolysaccharide core biosynthesis glycosyl transferase compare
SMc04024 -2.5 -4.4 membrane-bound lytic murein transglycosylase compare
SMc01427 -2.5 -1.3 hypothetical protein compare
SMc02451 -2.5 -1.2 hypothetical protein compare
SMc00072 -2.5 -1.2 peroxiredoxin protein compare
SMc00987 -2.5 -2.1 hypothetical protein compare
SMc03967 -2.4 -1.0 Holliday junction resolvase compare
SMc03979 -2.4 -2.0 glyceraldehyde-3-phosphate dehydrogenase compare
SMc02232 -2.3 -1.5 hypothetical protein compare
SMc00466 -2.3 -2.0 hypothetical protein compare
SMc03100 -2.2 -1.0 hypothetical protein compare
SMc00073 -2.2 -1.6 hypothetical protein compare
SMc03978 -2.2 -2.9 transketolase compare
SMc01258 -2.1 -5.2 hypothetical protein compare
SMc00876 -2.1 -4.6 ATP-binding MRP protein compare
SMc02246 -2.1 -0.5 hypothetical protein compare
SMa2168 -2.1 -1.1 tRNA-Met compare
SMc00726 -2.1 -0.5 thiol:disulfide interchange redox-active center transmembrane protein compare
SMc02055 -2.1 -1.4 phytoene synthase compare
SM_b20563 -2.1 -1.6 hypothetical protein compare
SMc01723 -2.0 -1.8 hypothetical protein compare
SMc02169 -2.0 -1.4 ABC transporter ATP-binding protein compare
SMc01147 -2.0 -1.4 coproporphyrinogen III oxidase compare
SM_b21677 -2.0 -2.7 signal peptide compare
SMc02036 -2.0 -2.2 transcriptional regulator compare
SMa0052 -2.0 -2.1 hypothetical protein compare
SMc02909 -1.9 -0.9 transglycosylase transmembrane protein compare
SMc04385 -1.9 -2.2 L-2-aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31) (from data) compare
SMc02868 -1.9 -2.7 multidrug efflux system protein compare
SMc02234 -1.9 -1.6 hypothetical protein compare
SMc00712 -1.9 -1.1 hypothetical protein compare
SMc01619 -1.9 -1.9 hypothetical protein compare
SMc03093 -1.9 -3.1 hypothetical protein compare
SMc00859 -1.9 -1.3 hypothetical protein compare
SMc02755 -1.9 -3.8 S-adenosyl-L-homocysteine hydrolase compare
SM_b21482 -1.9 -1.9 hypothetical protein compare
SMc01939 -1.9 -1.0 urease subunit beta compare
SM_b20880 -1.9 -4.1 ATP-dependent RNA helicase compare
SMc01342 -1.9 -3.7 hypothetical protein compare
SMc03850 -1.8 -0.6 heme exporter D (cytochrome C-type biogenesis protein) transmembrane compare
SMc02143 -1.8 -2.7 phosphate ABC transporter permease compare
SMc02697 -1.8 -1.2 hypothetical protein compare
SMc00602 -1.8 -2.8 excinuclease ABC subunit C compare
SM_b20086 -1.8 -1.5 hypothetical protein compare
SMc04085 -1.8 -3.9 hypothetical protein compare
SM_b20655 -1.8 -1.8 hypothetical protein compare
SMc00099 -1.8 -1.9 alkylphosphonate uptake protein compare
SMc03070 -1.7 -4.6 glucose-6-phosphate 1-dehydrogenase compare
SMc00295 -1.7 -0.6 hypothetical protein compare
SMc02614 -1.7 -1.5 hypothetical protein compare
SMc04383 -1.7 -3.2 putative hydrolase, required for lysine catabolism (from data) compare
SMc01556 -1.7 -2.0 hypothetical protein compare
SMc01974 -1.7 -1.8 transcriptional regulator compare
SM_b20882 -1.7 -1.2 hypothetical protein compare
SMc01216 -1.7 -2.1 hypothetical protein compare
SMa1929 -1.7 -2.6 hypothetical protein compare
SM_b20811 -1.7 -1.9 hypothetical protein compare
SMc01724 -1.6 -2.0 hypothetical protein compare
SMc00496 -1.6 -0.8 hypothetical protein compare
SMc02631 -1.6 -0.9 hypothetical protein compare
SM_b20897 -1.6 -1.5 hypothetical protein compare
SMc00556 -1.6 -2.8 DNA repair protein RadA compare
SMc00184 -1.6 -2.1 tRNA/rRNA methyltransferase compare
SMc04224 -1.6 -1.1 hypothetical protein compare
SMc00982 -1.6 -3.6 dioxygenase compare
SM_b21084 -1.6 -1.4 hypothetical protein compare
SMc02121 -1.6 -1.0 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, ATPase component (from data) compare
SMc02582 -1.6 -1.8 hypothetical protein compare
SMc03053 -1.6 -0.9 flagellar biosynthesis protein FliQ compare
SM_b20267 -1.5 -1.7 D-amino acid dehydrogenase compare
SMc02739 -1.5 -2.9 glycine betaine transport ATP-binding ABC transporter protein compare
SMc01718 -1.5 -5.7 hypothetical protein compare
SMc02149 -1.5 -1.0 hypothetical protein compare
SMc01361 -1.5 -2.3 dihydroorotase compare
SMa1053 -1.5 -0.8 hypothetical protein compare
SMa1635 -1.5 -1.3 hypothetical protein compare
SMc03839 -1.5 -0.6 hypothetical protein compare
SM_b21591 -1.5 -1.3 GntR family transcriptional regulator compare
SMc01468 -1.5 -1.4 chemotaxis protein compare
SMc00828 -1.4 -3.9 hypothetical protein compare
SMa0789 -1.4 -1.8 GntR family transcriptional regulator compare
SMa1754 -1.4 -2.6 ABC transporter ATP-binding protein compare
SM_b21096 -1.4 -0.8 amino acid transporter ABC transporter ATP-binding protein compare
SM_b20323 -1.4 -0.7 transcriptional regulator compare
SMc00012 -1.4 -0.8 cytochrome C oxidase assembly protein compare
SM_b20433 -1.4 -1.9 ectoine utilization protein EutC compare
SM_b20760 -1.4 -2.0 carbon-phosphorus lyase compare
SMc03182 -1.4 -2.8 pH adaptation potassium efflux system E transmembrane protein compare
SMa2215 -1.4 -2.6 GntR family transcriptional regulator compare
SMc03924 -1.4 -5.2 glycogen synthase compare
SM_b20119 -1.4 -1.6 hypothetical protein compare
SMc00355 -1.4 -1.7 hypothetical protein compare
SM_b21218 -1.4 -2.7 glucosamine-6-phosphate deaminase, isomerizing (EC 3.5.99.6) (from data) compare
SM_b21651 -1.4 -2.5 plasmid stability protein compare
SMa0846 -1.4 -0.8 transposase, fragment compare
SMc01728 -1.4 -2.3 transcriptional regulator compare
SMc02569 -1.4 -1.3 imidazole glycerol phosphate synthase subunit HisF compare
SMc00425 -1.4 -1.6 transcriptional regulator compare
SMc01642 -1.4 -4.5 periplasmic binding protein compare
SMc02677 -1.4 -2.7 pyrroline-5-carboxylate reductase compare
SMc02812 -1.4 -1.3 hypothetical protein compare
SMc00047 -1.3 -1.8 beta-lactamase signal peptide protein compare
SMc01089 -1.3 -0.9 hypothetical protein compare
SMc01235 -1.3 -6.1 excinuclease ABC subunit A compare
SMa5015 -1.3 -1.6 hypothetical protein compare
SMc04175 -1.3 -3.3 transmembrane protein compare
SMc01877 -1.3 -2.6 DNA repair protein compare
SMa0838 -1.3 -1.6 SyrA protein involved in EPS production compare
SM_b20509 -1.3 -1.1 transcriptional regulator compare
SMc01461 -1.3 -3.2 DNA helicase II protein compare
SMc01575 -1.3 -5.4 hypothetical protein compare
SMc00827 -1.3 -4.7 transport transmembrane protein compare
SMc04231 -1.3 -4.8 excinuclease ABC subunit B compare
SMc02856 -1.3 -5.1 penicillin-binding protein compare
SM_b20258 -1.3 -1.6 transcriptional regulator compare
SMc00247 -1.3 -4.3 phosphatidylcholine synthase compare
SMc01569 -1.3 -0.4 carbamoyl phosphate synthase small subunit compare
SMc01568 -1.3 -0.7 hypothetical protein compare
SMc00856 -1.3 -0.5 hypothetical protein compare
SMc04391 -1.3 -1.0 3-ketoacyl-ACP reductase compare
SMc03184 -1.3 -0.7 PH adaptation potassium efflux system G transmembrane protein compare
SMc02221 -1.3 -1.6 hypothetical protein compare
SMa1660 -1.3 -1.4 hypothetical protein compare
SMc02778 -1.3 -0.5 hydroxyacid aldolase compare
SMc02266 -1.3 -1.0 hypothetical protein compare
SMa2253 -1.3 -0.9 hypothetical protein compare
SM_b20083 -1.2 -1.3 hypothetical protein compare
SMc00321 -1.2 -2.6 tRNA pseudouridine synthase B compare
SM_b20942 -1.2 -2.2 UDP glucose 4-epimerase compare
SMc00080 -1.2 -1.7 hypothetical protein compare
SMc02484 -1.2 -3.2 amino acid efflux transmembrane protein compare
SMa0663 -1.2 -2.1 hypothetical protein compare
SM_b20217 -1.2 -1.4 hypothetical protein compare
SMa1933 -1.2 -1.3 LysR family transcriptional regulator compare
SMc04090 -1.2 -1.6 sun protein compare
SMc00019 -1.2 -1.3 hypothetical protein compare
SMc04246 -1.2 -0.9 transmembrane signal peptide protein compare
SMa1325 -1.2 -2.0 hypothetical protein compare
SM_b20042 -1.2 -1.6 hypothetical protein compare
SMc00557 -1.2 -2.7 alanine racemase compare
SMc00302 -1.2 -1.5 hypothetical protein compare
SM_b20728 -1.2 -1.1 hypothetical protein compare
SMc02656 -1.2 -2.6 hypothetical protein compare
SM_b21210 -1.2 -3.0 two-component response regulator protein compare
SMa0754 -1.2 -1.2 hypothetical protein compare
SMa1168 -1.2 -2.3 Dehydrogenase, FAD-dependent compare
SMc01800 -1.2 -0.6 cytochrome C oxidase assembly transmembrane protein compare
SMc02306 -1.2 -0.8 hypothetical protein compare
SM_b21037 -1.2 -3.8 oligopeptidemurein peptide ABC transporter substrate-binding protein precursor compare
SMc01666 -1.2 -3.8 methionine gamma-lyase compare


Specific Phenotypes

For 2 genes in this experiment