Experiment set13IT082 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cobalt chloride hexahydrate 0.6 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_3611 -3.8 -2.6 HflC protein compare
Pf6N2E2_4071 -3.1 -4.6 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5679 -3.1 -4.1 hypothetical protein compare
Pf6N2E2_563 -2.9 -9.9 Serine transporter conserved
Pf6N2E2_3607 -2.8 -9.1 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_4612 -2.7 -4.3 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2518 -2.5 -3.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4614 -2.5 -3.3 twitching motility protein PilH compare
Pf6N2E2_4618 -2.5 -4.6 Chemotaxis signal transduction protein compare
Pf6N2E2_204 -2.4 -2.7 hypothetical protein compare
Pf6N2E2_2447 -2.4 -6.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_446 -2.3 -6.6 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_5705 -2.3 -3.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4360 -2.2 -9.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_5646 -2.2 -2.0 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5430 -2.2 -3.3 Transglycosylase, Slt family compare
Pf6N2E2_4120 -2.2 -11.6 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2129 -2.2 -3.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_1634 -2.1 -4.4 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_241 -2.1 -2.0 hypothetical protein compare
Pf6N2E2_3661 -2.1 -6.4 hypothetical protein compare
Pf6N2E2_4661 -2.1 -3.0 KluA regulatory protein compare
Pf6N2E2_5534 -2.0 -1.9 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4453 -2.0 -11.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4797 -2.0 -1.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3323 -2.0 -3.8 hypothetical protein compare
Pf6N2E2_3847 -1.9 -2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5155 -1.9 -3.7 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5711 -1.9 -5.8 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_4381 -1.9 -3.7 hypothetical protein compare
Pf6N2E2_4153 -1.8 -4.0 Sensory box histidine kinase compare
Pf6N2E2_3908 -1.8 -2.7 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5671 -1.8 -3.4 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_5111 -1.8 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4382 -1.7 -7.1 FIG00953403: hypothetical protein compare
Pf6N2E2_1935 -1.7 -2.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_2258 -1.7 -6.8 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_3321 -1.7 -5.6 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_1635 -1.7 -4.1 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_4810 -1.6 -7.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_1288 -1.6 -2.2 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_4422 -1.6 -2.4 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_4276 -1.6 -3.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1625 -1.6 -2.8 Ferric reductase (1.6.99.14) compare
Pf6N2E2_6063 -1.6 -4.9 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2012 -1.6 -2.7 hypothetical protein compare
Pf6N2E2_5761 -1.6 -1.6 Transcriptional regulator, TetR family compare
Pf6N2E2_4418 -1.5 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_3667 -1.5 -1.9 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_1633 -1.5 -2.8 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_469 -1.5 -2.3 lipoprotein, putative compare
Pf6N2E2_4187 -1.5 -6.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_5331 -1.5 -4.2 ATPase, AFG1 family compare
Pf6N2E2_4155 -1.5 -6.7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2864 -1.5 -2.7 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_746 -1.5 -1.3 FIG00958097: hypothetical protein compare
Pf6N2E2_1014 -1.5 -2.0 Nitrate/nitrite transporter compare
Pf6N2E2_3658 -1.5 -6.6 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2586 -1.5 -0.9 Hpt domain protein compare
Pf6N2E2_3240 -1.5 -1.2 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_122 -1.5 -1.8 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_525 -1.5 -4.7 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1136 -1.5 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_5494 -1.5 -3.2 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2634 -1.5 -7.1 Potassium uptake protein TrkH compare
Pf6N2E2_5527 -1.5 -2.2 Cold shock protein CspC compare
Pf6N2E2_6065 -1.4 -2.5 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_1705 -1.4 -1.8 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_5520 -1.4 -4.7 Sensory box histidine kinase compare
Pf6N2E2_5842 -1.4 -2.9 Transcriptional regulator, TetR family compare
Pf6N2E2_4413 -1.4 -6.8 FIG004064: hypothetical protein compare
Pf6N2E2_5049 -1.4 -2.5 acetyltransferase, GNAT family compare
Pf6N2E2_4391 -1.4 -4.9 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_3283 -1.4 -5.5 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_3134 -1.4 -1.3 hypothetical protein compare
Pf6N2E2_2633 -1.4 -2.7 Nitroreductase family protein compare
Pf6N2E2_5321 -1.4 -6.9 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_1740 -1.4 -3.1 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_6140 -1.4 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_1743 -1.4 -2.0 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_4206 -1.4 -1.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3040 -1.4 -6.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_6064 -1.4 -3.8 2-methylaconitate isomerase compare
Pf6N2E2_3079 -1.3 -4.8 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_5319 -1.3 -5.9 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_5342 -1.3 -1.9 21 kDa hemolysin precursor compare
Pf6N2E2_5554 -1.3 -3.9 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_493 -1.3 -2.5 YD repeat protein compare
Pf6N2E2_2755 -1.3 -3.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1315 -1.3 -2.1 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_5300 -1.3 -8.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3039 -1.3 -6.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2261 -1.3 -3.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_3351 -1.3 -2.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2681 -1.3 -1.6 3-phosphoglycerate kinase compare
Pf6N2E2_1391 -1.3 -1.8 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3569 -1.3 -1.3 hypothetical protein compare
Pf6N2E2_3820 -1.3 -2.5 hypothetical protein compare
Pf6N2E2_5181 -1.2 -5.5 Paraquat-inducible protein A compare
Pf6N2E2_5346 -1.2 -1.9 rRNA small subunit methyltransferase I compare
Pf6N2E2_2675 -1.2 -0.8 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_4494 -1.2 -2.5 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_3762 -1.2 -3.6 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_1632 -1.2 -2.3 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_4617 -1.2 -8.8 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_5320 -1.2 -5.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_4092 -1.2 -2.5 FIG00954395: hypothetical protein compare
Pf6N2E2_82 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_5150 -1.2 -3.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3763 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_2064 -1.2 -1.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3920 -1.2 -7.9 Cystine ABC transporter, permease protein compare
Pf6N2E2_765 -1.2 -3.5 Fap system putative outer membrane protein compare
Pf6N2E2_3199 -1.2 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5768 -1.2 -2.5 DNA recombination-dependent growth factor C compare
Pf6N2E2_5546 -1.2 -2.9 Queuosine Biosynthesis QueC ATPase compare
Pf6N2E2_358 -1.2 -2.8 Haloacid dehalogenase, type II compare
Pf6N2E2_4399 -1.2 -3.8 GGDEF domain/EAL domain protein compare
Pf6N2E2_3255 -1.2 -2.5 YrbA protein compare
Pf6N2E2_1545 -1.2 -1.7 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2526 -1.2 -3.4 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_3829 -1.2 -2.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_5317 -1.2 -7.5 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_919 -1.1 -0.9 FIG00954373: hypothetical protein compare
Pf6N2E2_5584 -1.1 -2.2 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_3791 -1.1 -6.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_4615 -1.1 -1.6 type IV pili signal transduction protein PilI compare
Pf6N2E2_3919 -1.1 -5.5 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf6N2E2_4416 -1.1 -0.7 Tyrosine recombinase XerC compare
Pf6N2E2_1683 -1.1 -2.4 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2282 -1.1 -1.6 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_5669 -1.1 -4.6 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_1283 -1.1 -1.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3517 -1.1 -3.1 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_623 -1.1 -0.8 FIG00954674: hypothetical protein compare
Pf6N2E2_238 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_621 -1.1 -3.0 TPR domain protein in aerotolerance operon compare
Pf6N2E2_5006 -1.1 -3.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5820 -1.1 -2.4 FIG00957914: hypothetical protein compare
Pf6N2E2_4635 -1.1 -4.6 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_159 -1.1 -2.1 DNA damage resistance protein (from data) compare
Pf6N2E2_5318 -1.1 -8.6 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_3533 -1.1 -2.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_2274 -1.1 -1.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_37 -1.1 -1.5 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3024 -1.1 -2.3 Phage tail fibers compare
Pf6N2E2_2340 -1.1 -2.3 Transcriptional regulator, GntR family compare
Pf6N2E2_4636 -1.1 -3.1 periplasmic binding protein, putative compare
Pf6N2E2_5183 -1.1 -6.0 Paraquat-inducible protein B compare
Pf6N2E2_4499 -1.1 -1.6 protein of unknown function DUF86 compare
Pf6N2E2_2549 -1.0 -1.4 hypothetical protein compare
Pf6N2E2_923 -1.0 -1.6 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_3252 -1.0 -4.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_3257 -1.0 -1.8 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1031 -1.0 -2.2 Alkanesulfonates transport system permease protein compare
Pf6N2E2_3659 -1.0 -3.5 Protein fixF compare
Pf6N2E2_4369 -1.0 -1.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3666 -1.0 -1.4 InaA protein compare
Pf6N2E2_5178 -1.0 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1494 -1.0 -2.5 Glutamate transport membrane-spanning protein compare
Pf6N2E2_762 -1.0 -4.6 FIG00960186: hypothetical protein compare
Pf6N2E2_1246 -1.0 -1.5 FIG00961372: hypothetical protein compare
Pf6N2E2_1776 -1.0 -1.5 Chemotaxis protein CheD compare
Pf6N2E2_2080 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3537 -1.0 -1.9 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_302 -1.0 -2.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf6N2E2_5687 -1.0 -5.2 Transporter, MFS superfamily compare
Pf6N2E2_1806 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_170 -1.0 -1.9 lipoprotein, putative compare
Pf6N2E2_2694 -1.0 -4.2 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_928 -1.0 -1.9 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_5956 -1.0 -3.6 FIG004453: protein YceG like compare
Pf6N2E2_3270 -1.0 -3.0 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1972 -1.0 -1.8 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4077 -1.0 -2.1 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2425 -1.0 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2852 -1.0 -4.9 GGDEF domain/EAL domain protein compare
Pf6N2E2_555 -1.0 -2.9 Uncharacterized protein ImpB compare
Pf6N2E2_3081 -1.0 -3.7 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_5544 -1.0 -4.0 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_4982 -1.0 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_5328 -1.0 -2.4 FIG00958649: hypothetical protein compare
Pf6N2E2_1497 -1.0 -2.3 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_2700 -0.9 -4.5 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_1584 -0.9 -2.3 Transcriptional regulator, MarR family / Acetyltransferase (GNAT) compare
Pf6N2E2_1636 -0.9 -3.6 Ferrichrome-iron receptor compare
Pf6N2E2_40 -0.9 -2.4 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3872 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_562 -0.9 -3.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_1502 -0.9 -1.5 Two-component system regulatory protein compare
Pf6N2E2_1626 -0.9 -4.3 Putative ATP-binding component of a transport system compare
Pf6N2E2_4829 -0.9 -3.8 OsmC/Ohr family protein compare
Pf6N2E2_5243 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_3634 -0.9 -0.9 Transporter compare
Pf6N2E2_2201 -0.9 -2.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_5743 -0.9 -2.2 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_133 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_622 -0.9 -2.0 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2880 -0.9 -1.9 FIG00959696: hypothetical protein compare
Pf6N2E2_5573 -0.9 -2.2 Glycerol-3-phosphate regulon repressor, DeoR family compare


Specific Phenotypes

For 19 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Cobalt chloride hexahydrate across organisms