Experiment set13IT080 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Sodium nitrate (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS28645 -4.5 -10.9 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS02490 -4.1 -10.5 phosphoserine phosphatase SerB compare
PFLU_RS02050 -4.1 -12.5 NAD(P)-binding protein compare
PFLU_RS27365 -4.0 -9.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS28695 -4.0 -7.1 phosphoglycerate dehydrogenase compare
PFLU_RS20575 -3.9 -6.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS02045 -3.9 -19.0 glutamate synthase large subunit compare
PFLU_RS28385 -3.8 -10.8 homoserine O-acetyltransferase compare
PFLU_RS20580 -3.8 -9.2 3-isopropylmalate dehydratase large subunit compare
PFLU_RS28535 -3.7 -12.6 dihydroxy-acid dehydratase compare
PFLU_RS25640 -3.7 -9.4 ketol-acid reductoisomerase compare
PFLU_RS29880 -3.6 -14.3 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS27370 -3.6 -9.6 anthranilate phosphoribosyltransferase compare
PFLU_RS24765 -3.6 -17.6 2-isopropylmalate synthase compare
PFLU_RS20565 -3.4 -12.1 3-isopropylmalate dehydrogenase compare
PFLU_RS29875 -3.4 -15.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01690 -3.3 -7.1 nitrogen regulation protein NR(II) compare
PFLU_RS04465 -3.3 -8.7 ATP phosphoribosyltransferase compare
PFLU_RS04470 -3.2 -9.3 histidinol dehydrogenase compare
PFLU_RS02590 -3.2 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20540 -3.2 -9.4 phosphoribosylanthranilate isomerase compare
PFLU_RS18395 -3.2 -2.2 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS12980 -3.1 -7.2 nitrite/sulfite reductase compare
PFLU_RS00180 -3.1 -5.1 tryptophan synthase subunit beta compare
PFLU_RS20510 -3.1 -12.5 O-succinylhomoserine sulfhydrylase compare
PFLU_RS17815 -3.1 -3.6 response regulator compare
PFLU_RS00175 -3.1 -5.1 tryptophan synthase subunit alpha compare
PFLU_RS29885 -3.1 -11.2 LysR family transcriptional regulator compare
PFLU_RS01605 -3.0 -5.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28165 -3.0 -10.4 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01610 -3.0 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28390 -3.0 -9.7 methionine biosynthesis protein MetW compare
PFLU_RS18505 -2.9 -6.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS01685 -2.9 -3.4 nitrogen regulation protein NR(I) compare
PFLU_RS06055 -2.9 -2.8 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS23585 -2.9 -8.1 GntP family permease compare
PFLU_RS22575 -2.8 -6.3 ANTAR domain-containing protein compare
PFLU_RS03970 -2.8 -9.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS24025 -2.7 -10.0 quinolinate synthase NadA compare
PFLU_RS20515 -2.6 -2.6 amidophosphoribosyltransferase compare
PFLU_RS25360 -2.6 -6.9 glutamate 5-kinase compare
PFLU_RS12975 -2.6 -3.9 DUF934 domain-containing protein compare
PFLU_RS24205 -2.6 -1.8 DNA binding protein compare
PFLU_RS16715 -2.6 -10.3 nitrite reductase large subunit compare
PFLU_RS03665 -2.6 -5.6 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS06265 -2.6 -15.2 [protein-PII] uridylyltransferase compare
PFLU_RS01900 -2.5 -6.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS00415 -2.5 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS06320 -2.5 -2.4 OmpH family outer membrane protein compare
PFLU_RS01910 -2.5 -1.7 sterol-binding protein compare
PFLU_RS23390 -2.5 -2.3 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
PFLU_RS25645 -2.5 -2.4 acetolactate synthase small subunit compare
PFLU_RS22740 -2.5 -1.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS01620 -2.4 -5.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS23065 -2.4 -9.1 phosphate acyltransferase PlsX compare
PFLU_RS20290 -2.4 -1.9 integration host factor subunit alpha compare
PFLU_RS08505 -2.4 -7.3 protease HtpX compare
PFLU_RS25715 -2.3 -5.8 RNA polymerase-binding protein DksA compare
PFLU_RS07665 -2.3 -2.7 type I DNA topoisomerase compare
PFLU_RS04945 -2.3 -3.1 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS07225 -2.3 -13.5 L-aspartate oxidase compare
PFLU_RS29095 -2.3 -16.7 polyphosphate kinase 1 compare
PFLU_RS27640 -2.3 -2.0 alpha/beta fold hydrolase compare
PFLU_RS09055 -2.3 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS07245 -2.3 -7.4 DegQ family serine endoprotease compare
PFLU_RS05890 -2.3 -1.4 recombination regulator RecX compare
PFLU_RS24825 -2.2 -3.9 Fe-S cluster assembly protein IscX compare
PFLU_RS28655 -2.2 -9.6 HAD family hydrolase compare
PFLU_RS06310 -2.2 -7.2 sigma E protease regulator RseP compare
PFLU_RS01625 -2.2 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS20955 -2.1 -1.7 DUF1028 domain-containing protein compare
PFLU_RS30165 -2.1 -6.5 ParA family protein compare
PFLU_RS08675 -2.1 -1.4 DsbE family thiol:disulfide interchange protein compare
PFLU_RS04220 -2.1 -7.6 FadR family transcriptional regulator compare
PFLU_RS07230 -2.0 -9.6 RNA polymerase sigma factor RpoE compare
PFLU_RS02365 -2.0 -8.3 glycosyltransferase compare
PFLU_RS19170 -2.0 -3.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS22095 -2.0 -13.0 GTP diphosphokinase compare
PFLU_RS23310 -2.0 -7.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS05020 -2.0 -1.9 DUF1120 domain-containing protein compare
PFLU_RS16310 -2.0 -2.9 hypothetical protein compare
PFLU_RS01895 -2.0 -5.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS24325 -2.0 -10.3 glucokinase compare
PFLU_RS08630 -2.0 -4.9 molybdopterin molybdotransferase MoeA compare
PFLU_RS22070 -2.0 -3.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS06855 -1.9 -2.5 helix-turn-helix transcriptional regulator compare
PFLU_RS16710 -1.9 -2.9 nitrite reductase small subunit NirD compare
PFLU_RS20335 -1.9 -2.5 hypothetical protein compare
PFLU_RS08760 -1.9 -2.6 phosphonate C-P lyase system protein PhnG compare
PFLU_RS27645 -1.9 -6.6 8-amino-7-oxononanoate synthase compare
PFLU_RS24330 -1.9 -2.2 phosphogluconate dehydratase compare
PFLU_RS19935 -1.8 -2.2 type II secretion system protein GspF compare
PFLU_RS25735 -1.8 -1.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS30345 -1.8 -2.2 DUF2559 family protein compare
PFLU_RS11525 -1.8 -3.3 GntR family transcriptional regulator compare
PFLU_RS23725 -1.8 -4.1 glucose-6-phosphate dehydrogenase compare
PFLU_RS12450 -1.8 -7.6 cyclic peptide export ABC transporter compare
PFLU_RS15410 -1.7 -1.6 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS09980 -1.7 -11.6 peptidase S41 compare
PFLU_RS28690 -1.7 -10.1 FAD-binding oxidoreductase compare
PFLU_RS11990 -1.7 -3.2 hypothetical protein compare
PFLU_RS02670 -1.7 -2.6 hypothetical protein compare
PFLU_RS27635 -1.7 -4.2 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS03075 -1.7 -1.6 translation initiation factor Sui1 compare
PFLU_RS29065 -1.7 -1.1 amino acid ABC transporter ATP-binding protein compare
PFLU_RS12445 -1.7 -10.1 TonB-dependent siderophore receptor compare
PFLU_RS28325 -1.7 -4.8 energy transducer TonB compare
PFLU_RS08125 -1.7 -1.9 integration host factor subunit beta compare
PFLU_RS08625 -1.7 -3.4 molybdenum cofactor biosynthesis protein B compare
PFLU_RS15610 -1.7 -3.9 helix-turn-helix transcriptional regulator compare
PFLU_RS08660 -1.6 -1.1 heme exporter protein CcmD compare
PFLU_RS23305 -1.6 -7.8 arginine N-succinyltransferase compare
PFLU_RS29515 -1.6 -7.5 RidA family protein compare
PFLU_RS22105 -1.6 -3.9 cysteine synthase CysM compare
PFLU_RS02825 -1.6 -1.8 phosphate starvation-inducible protein PsiF compare
PFLU_RS18530 -1.6 -3.0 DNA translocase FtsK compare
PFLU_RS23010 -1.6 -7.4 radical SAM protein compare
PFLU_RS24785 -1.6 -7.8 outer membrane protein assembly factor BamB compare
PFLU_RS21300 -1.6 -3.6 cysteine hydrolase compare
PFLU_RS01390 -1.6 -4.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS14020 -1.6 -3.2 hypothetical protein compare
PFLU_RS19165 -1.6 -3.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS26290 -1.6 -1.0 2Fe-2S iron-sulfur cluster binding domain-containing protein compare
PFLU_RS27650 -1.5 -6.1 biotin synthase BioB compare
PFLU_RS26635 -1.5 -4.5 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS26640 -1.5 -5.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS21740 -1.5 -4.5 Hpt domain-containing protein compare
PFLU_RS04330 -1.5 -9.9 TIGR02099 family protein compare
PFLU_RS13895 -1.5 -1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS31290 -1.5 -1.9 EamA family transporter compare
PFLU_RS08860 -1.5 -2.7 2-hydroxy-3-oxopropionate reductase compare
PFLU_RS25730 -1.5 -7.7 PAS domain S-box protein compare
PFLU_RS29550 -1.5 -2.8 ATP-dependent DNA helicase RecG compare
PFLU_RS00695 -1.4 -1.4 DUF2789 domain-containing protein compare
PFLU_RS03770 -1.4 -8.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS09500 -1.4 -1.1 hypothetical protein compare
PFLU_RS14820 -1.4 -3.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS28195 -1.4 -6.3 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS04360 -1.4 -3.4 class II fumarate hydratase compare
PFLU_RS13035 -1.4 -2.6 cobalamin biosynthesis protein CobW compare
PFLU_RS23590 -1.4 -1.6 gluconokinase compare
PFLU_RS18670 -1.4 -0.9 NADH-quinone oxidoreductase subunit M compare
PFLU_RS14500 -1.4 -4.0 hypothetical protein compare
PFLU_RS26595 -1.4 -1.8 lipoprotein compare
PFLU_RS30590 -1.4 -1.3 hypothetical protein compare
PFLU_RS29480 -1.4 -6.5 exodeoxyribonuclease III compare
PFLU_RS04430 -1.4 -4.3 ATP-binding cassette domain-containing protein compare
PFLU_RS13540 -1.4 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS22520 -1.4 -2.0 GntR family transcriptional regulator compare
PFLU_RS04835 -1.4 -1.0 hypothetical protein compare
PFLU_RS22580 -1.3 -7.4 NarK/NasA family nitrate transporter compare
PFLU_RS17970 -1.3 -3.7 LysR family transcriptional regulator compare
PFLU_RS19175 -1.3 -5.3 trigger factor compare
PFLU_RS04440 -1.3 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS29310 -1.3 -1.1 accessory factor UbiK family protein compare
PFLU_RS22835 -1.3 -5.5 amidotransferase compare
PFLU_RS07685 -1.3 -2.7 transcriptional repressor LexA compare
PFLU_RS07765 -1.3 -5.3 cupredoxin family protein compare
PFLU_RS26660 -1.3 -1.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS01955 -1.3 -4.5 DUF971 domain-containing protein compare
PFLU_RS14440 -1.3 -0.8 hypothetical protein compare
PFLU_RS09945 -1.3 -2.7 catalase family protein compare
PFLU_RS08185 -1.3 -5.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS23750 -1.2 -7.0 carbohydrate ABC transporter permease compare
PFLU_RS30160 -1.2 -2.0 ParB/RepB/Spo0J family partition protein compare
PFLU_RS04660 -1.2 -4.2 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS04315 -1.2 -2.5 rod shape-determining protein MreD compare
PFLU_RS02860 -1.2 -1.7 urease subunit beta compare
PFLU_RS28965 -1.2 -5.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS27475 -1.2 -2.7 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS21495 -1.2 -1.4 TlpA family protein disulfide reductase compare
PFLU_RS03765 -1.2 -5.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS03240 -1.2 -7.1 copper-translocating P-type ATPase compare
PFLU_RS02775 -1.2 -0.9 urease accessory protein UreF compare
PFLU_RS17060 -1.2 -1.7 monooxygenase compare
PFLU_RS30520 -1.2 -3.5 ketoacyl-ACP synthase III compare
PFLU_RS08650 -1.2 -0.8 heme exporter protein CcmB compare
PFLU_RS16445 -1.2 -2.2 PIG-L family deacetylase compare
PFLU_RS25760 -1.2 -2.6 glucose-6-phosphate isomerase compare
PFLU_RS13300 -1.2 -1.7 DNA-directed RNA polymerase sigma-70 factor compare
PFLU_RS24790 -1.1 -3.2 tetratricopeptide repeat protein compare
PFLU_RS18615 -1.1 -1.2 NADH-quinone oxidoreductase subunit A compare
PFLU_RS03610 -1.1 -3.3 redox-regulated ATPase YchF compare
PFLU_RS30725 -1.1 -2.7 DUF1652 domain-containing protein compare
PFLU_RS18805 -1.1 -2.3 ABC transporter ATP-binding protein compare
PFLU_RS09100 -1.1 -2.5 HAMP domain-containing protein compare
PFLU_RS21985 -1.1 -2.9 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS28650 -1.1 -3.5 RNA pyrophosphohydrolase compare
PFLU_RS07785 -1.1 -5.0 VacJ family lipoprotein compare
PFLU_RS19520 -1.1 -2.2 substrate-binding domain-containing protein compare
PFLU_RS05305 -1.1 -1.8 protease inhibitor I42 family protein compare
PFLU_RS27630 -1.1 -2.3 dethiobiotin synthase compare
PFLU_RS08180 -1.1 -2.8 ketoacyl-ACP synthase III compare
PFLU_RS08620 -1.1 -3.2 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS09845 -1.1 -1.6 biotin carboxyl carrier domain-containing protein compare
PFLU_RS14545 -1.0 -1.4 hypothetical protein compare
PFLU_RS29900 -1.0 -5.6 DNA helicase II compare
PFLU_RS04435 -1.0 -3.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS09535 -1.0 -1.2 TIGR03750 family conjugal transfer protein compare
PFLU_RS12385 -1.0 -1.5 methyl-accepting chemotaxis protein compare


Specific Phenotypes

For 3 genes in this experiment

For no stress control D-Glucose in Pseudomonas fluorescens SBW25-INTG

For no stress control D-Glucose across organisms