Experiment set13IT080 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Sodium nitrate (N); with TAPS

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS31755 +1.8 1.8 hypothetical protein compare
PFLU_RS14715 +1.7 12.2 protein-glutamate O-methyltransferase CheR compare
PFLU_RS12740 +1.5 4.5 BcpO-related WXXGXW repeat protein compare
PFLU_RS21360 +1.5 1.8 MarR family transcriptional regulator compare
PFLU_RS31010 +1.4 2.5 transposase compare
PFLU_RS10765 +1.4 9.8 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS21780 +1.3 5.7 flagellar hook-basal body complex protein FliE compare
PFLU_RS21695 +1.3 6.7 flagellar biosynthesis protein FlhB compare
PFLU_RS31275 +1.3 1.9 hypothetical protein compare
PFLU_RS21795 +1.3 11.5 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS21675 +1.3 10.7 flagellar biosynthesis protein FlhA compare
PFLU_RS21710 +1.2 7.6 flagellar type III secretion system pore protein FliP compare
PFLU_RS14450 +1.2 2.2 AzlD domain-containing protein compare
PFLU_RS12800 +1.2 2.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS23175 +1.2 5.8 flagellar basal body rod protein FlgC compare
PFLU_RS16565 +1.2 4.1 hypothetical protein compare
PFLU_RS21850 +1.2 9.2 flagellar basal body L-ring protein FlgH compare
PFLU_RS05965 +1.1 1.5 hypothetical protein compare
PFLU_RS23180 +1.1 7.2 flagellar basal body rod protein FlgB compare
PFLU_RS23165 +1.1 10.1 flagellar hook protein FlgE compare
PFLU_RS21855 +1.1 8.3 flagellar basal-body rod protein FlgG compare
PFLU_RS15785 +1.1 2.7 type II secretion system protein GspH compare
PFLU_RS23195 +1.1 9.2 flagellar basal body P-ring formation protein FlgA compare
PFLU_RS00460 +1.1 7.4 glutamate/aspartate:proton symporter GltP compare
PFLU_RS13750 +1.1 1.8 hypothetical protein compare
PFLU_RS21725 +1.1 7.4 flagellar motor switch protein FliM compare
PFLU_RS21755 +1.1 7.1 flagella biosynthesis chaperone FliJ compare
PFLU_RS17990 +1.0 3.8 ABC transporter substrate-binding protein compare
PFLU_RS31825 +1.0 3.1 hypothetical protein compare
PFLU_RS18515 +1.0 2.5 fluoride efflux transporter CrcB compare
PFLU_RS21240 +1.0 1.6 hypothetical protein compare
PFLU_RS21840 +1.0 6.8 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS21765 +1.0 5.9 flagellar assembly protein FliH compare
PFLU_RS21775 +1.0 7.3 flagellar basal body M-ring protein FliF compare
PFLU_RS21705 +1.0 5.7 flagellar biosynthesis protein FliQ compare
PFLU_RS13715 +1.0 1.5 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS12230 +1.0 3.7 carboxymuconolactone decarboxylase family protein compare
PFLU_RS21760 +1.0 7.2 flagellar protein export ATPase FliI compare
PFLU_RS00040 +1.0 7.6 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS29400 +0.9 1.9 DUF1127 domain-containing protein compare
PFLU_RS21660 +0.9 7.5 RNA polymerase sigma factor FliA compare
PFLU_RS21860 +0.9 4.7 flagellar basal body rod protein FlgF compare
PFLU_RS23660 +0.9 3.6 peptide deformylase compare
PFLU_RS11770 +0.9 2.8 type 1 glutamine amidotransferase domain-containing protein compare
PFLU_RS25865 +0.9 2.1 YhbY family RNA-binding protein compare
PFLU_RS21735 +0.9 6.5 flagellar hook-length control protein FliK compare
PFLU_RS17940 +0.9 2.9 low molecular weight phosphotyrosine protein phosphatase compare
PFLU_RS21700 +0.9 4.4 flagellar type III secretion system protein FliR compare
PFLU_RS13610 +0.9 1.9 ABC transporter ATP-binding protein compare
PFLU_RS18735 +0.9 0.9 hypothetical protein compare
PFLU_RS18005 +0.9 1.7 acyl-CoA/acyl-ACP dehydrogenase compare
PFLU_RS23205 +0.9 6.0 flagellar protein FlgN compare
PFLU_RS21845 +0.9 5.4 flagellar basal body P-ring protein FlgI compare
PFLU_RS29810 +0.9 5.2 LysR family transcriptional regulator compare
PFLU_RS21215 +0.9 1.4 YheU family protein compare
PFLU_RS10405 +0.9 2.0 helix-turn-helix transcriptional regulator compare
PFLU_RS12205 +0.8 2.6 DNA binding protein compare
PFLU_RS14335 +0.8 1.9 ABC transporter permease compare
PFLU_RS21835 +0.8 6.8 flagellar hook-associated protein FlgK compare
PFLU_RS18410 +0.8 2.9 response regulator compare
PFLU_RS01665 +0.8 2.1 glutaredoxin 3 compare
PFLU_RS17895 +0.8 3.3 glycosyltransferase family 2 protein compare
PFLU_RS21670 +0.8 5.7 flagellar biosynthesis protein FlhF compare
PFLU_RS21730 +0.8 4.8 flagellar basal body-associated protein FliL compare
PFLU_RS00410 +0.8 5.4 cytochrome c4 compare
PFLU_RS08575 +0.8 1.6 hypothetical protein compare
PFLU_RS02510 +0.8 6.0 flagellar motor stator protein MotA compare
PFLU_RS21770 +0.8 4.2 flagellar motor switch protein FliG compare
PFLU_RS15025 +0.8 3.1 2-keto-4-pentenoate hydratase compare
PFLU_RS09685 +0.8 2.2 hypothetical protein compare
PFLU_RS14210 +0.8 1.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS19600 +0.8 2.5 ATP-binding cassette domain-containing protein compare
PFLU_RS14155 +0.8 2.6 hypothetical protein compare
PFLU_RS02575 +0.8 5.4 GTPase HflX compare
PFLU_RS23890 +0.7 3.0 pseudouridine synthase compare
PFLU_RS16030 +0.7 3.4 aldehyde dehydrogenase family protein compare
PFLU_RS10980 +0.7 2.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
PFLU_RS14560 +0.7 1.8 DNA-binding protein compare
PFLU_RS03570 +0.7 1.7 hypothetical protein compare
PFLU_RS18420 +0.7 1.4 hypothetical protein compare
PFLU_RS20870 +0.7 2.0 hypothetical protein compare
PFLU_RS21830 +0.7 6.3 flagellar hook-associated protein 3 compare
PFLU_RS10045 +0.7 2.3 hypothetical protein compare
PFLU_RS14300 +0.7 1.1 response regulator transcription factor compare
PFLU_RS24280 +0.7 1.9 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS31835 +0.7 1.3 hypothetical protein compare
PFLU_RS03585 +0.7 1.1 hypothetical protein compare
PFLU_RS12915 +0.7 1.9 methyltransferase domain-containing protein compare
PFLU_RS12580 +0.7 3.8 MurR/RpiR family transcriptional regulator compare
PFLU_RS23595 +0.7 5.2 LacI family DNA-binding transcriptional regulator compare
PFLU_RS21910 +0.7 5.6 BamA/TamA family outer membrane protein compare
PFLU_RS02585 +0.7 2.8 protease modulator HflC compare
PFLU_RS10300 +0.7 5.5 transaldolase compare
PFLU_RS30865 +0.7 1.9 transposase compare
PFLU_RS18055 +0.7 1.1 hydrolase compare
PFLU_RS15200 +0.7 1.3 ABC transporter substrate-binding protein compare
PFLU_RS21610 +0.7 3.7 DUF2802 domain-containing protein compare
PFLU_RS20715 +0.6 0.9 iron ABC transporter permease compare
PFLU_RS00435 +0.6 5.3 PAS domain-containing protein compare
PFLU_RS24020 +0.6 2.3 RDD family protein compare
PFLU_RS14580 +0.6 2.5 lactoylglutathione lyase compare
PFLU_RS09495 +0.6 1.8 helix-turn-helix transcriptional regulator compare
PFLU_RS31645 +0.6 1.6 hypothetical protein compare
PFLU_RS13165 +0.6 3.3 hypothetical protein compare
PFLU_RS18000 +0.6 1.3 AhpC/TSA family protein compare
PFLU_RS21810 +0.6 5.5 flagellar filament capping protein FliD compare
PFLU_RS17850 +0.6 2.0 hypothetical protein compare
PFLU_RS17080 +0.6 1.3 FadR family transcriptional regulator compare
PFLU_RS06865 +0.6 2.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS14550 +0.6 3.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS01660 +0.6 1.4 rhodanese-like domain-containing protein compare
PFLU_RS25290 +0.6 2.7 hypothetical protein compare
PFLU_RS22040 +0.6 3.4 NlpC/P60 family protein compare
PFLU_RS16000 +0.6 2.3 transcriptional regulator FeaR compare
PFLU_RS02690 +0.6 0.8 hypothetical protein compare
PFLU_RS05875 +0.6 1.4 lysozyme compare
PFLU_RS04205 +0.6 4.1 cytochrome c1 compare
PFLU_RS04200 +0.6 4.7 cytochrome bc complex cytochrome b subunit compare
PFLU_RS14255 +0.6 2.1 TolC family protein compare
PFLU_RS15755 +0.6 1.3 type II secretion system protein M compare
PFLU_RS19570 +0.6 2.7 sugar ABC transporter ATP-binding protein compare
PFLU_RS00890 +0.6 2.5 hypothetical protein compare
PFLU_RS23780 +0.6 2.0 ATPase compare
PFLU_RS06810 +0.6 2.7 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS12220 +0.6 1.8 AraC family transcriptional regulator compare
PFLU_RS17355 +0.6 1.8 creatininase family protein compare
PFLU_RS01285 +0.6 0.8 HAMP domain-containing protein compare
PFLU_RS28075 +0.6 2.5 lysozyme inhibitor compare
PFLU_RS19555 +0.6 0.9 histidine phosphatase family protein compare
PFLU_RS23350 +0.6 3.7 ABC transporter substrate-binding protein compare
PFLU_RS13315 +0.6 1.1 class I SAM-dependent methyltransferase compare
PFLU_RS11930 +0.6 1.3 biopolymer transporter ExbD compare
PFLU_RS31190 +0.6 3.3 taurine ABC transporter substrate-binding protein compare
PFLU_RS21035 +0.6 2.7 SDR family oxidoreductase compare
PFLU_RS02515 +0.6 2.2 flagellar motor protein MotB compare
PFLU_RS07495 +0.6 1.2 DUF2892 domain-containing protein compare
PFLU_RS18125 +0.6 1.0 ABC transporter ATP-binding protein compare
PFLU_RS18810 +0.5 2.2 AMP-binding protein compare
PFLU_RS12675 +0.5 1.8 DUF2946 domain-containing protein compare
PFLU_RS11560 +0.5 1.9 aldolase compare
PFLU_RS16910 +0.5 2.4 LysR family transcriptional regulator compare
PFLU_RS18700 +0.5 1.2 hypothetical protein compare
PFLU_RS21825 +0.5 3.8 ketoacyl-ACP synthase III compare
PFLU_RS03055 +0.5 1.6 methyl-accepting chemotaxis protein compare
PFLU_RS10400 +0.5 2.6 GNAT family N-acetyltransferase compare
PFLU_RS30950 +0.5 1.7 cytochrome c compare
PFLU_RS24470 +0.5 1.8 MGMT family protein compare
PFLU_RS17935 +0.5 3.1 polysaccharide biosynthesis tyrosine autokinase compare
PFLU_RS04015 +0.5 1.1 1-phosphofructokinase compare
PFLU_RS25785 +0.5 1.8 BON domain-containing protein compare
PFLU_RS15100 +0.5 2.5 helix-turn-helix domain-containing protein compare
PFLU_RS20550 +0.5 4.2 FimV family protein compare
PFLU_RS15745 +0.5 1.5 type II secretion system ATPase GspE compare
PFLU_RS05315 +0.5 1.6 GntR family transcriptional regulator compare
PFLU_RS11790 +0.5 1.3 zinc-binding dehydrogenase compare
PFLU_RS19530 +0.5 1.4 SMP-30/gluconolactonase/LRE family protein compare
PFLU_RS31630 +0.5 1.2 hypothetical protein compare
PFLU_RS21010 +0.5 2.4 peptide-methionine (S)-S-oxide reductase MsrA compare
PFLU_RS14525 +0.5 2.0 c-type cytochrome compare
PFLU_RS12260 +0.5 0.9 hypothetical protein compare
PFLU_RS29780 +0.5 2.1 acyl-CoA thioesterase compare
PFLU_RS28120 +0.5 1.7 DUF1090 domain-containing protein compare
PFLU_RS19610 +0.5 1.5 hypothetical protein compare
PFLU_RS10180 +0.5 1.7 vanillate O-demethylase oxidoreductase VanB compare
PFLU_RS22535 +0.5 3.9 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS26095 +0.5 2.4 hypothetical protein compare
PFLU_RS18440 +0.5 2.3 NAD(P)H:quinone oxidoreductase compare
PFLU_RS00875 +0.5 1.5 hypothetical protein compare
PFLU_RS08600 +0.5 1.2 glutaredoxin family protein compare
PFLU_RS17595 +0.5 2.5 GDP-mannose pyrophosphatase compare
PFLU_RS29350 +0.5 2.0 xanthine phosphoribosyltransferase compare
PFLU_RS04195 +0.5 1.9 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS10310 +0.5 2.5 SDR family oxidoreductase compare
PFLU_RS23570 +0.5 2.2 pyridoxamine 5'-phosphate oxidase family protein compare
PFLU_RS01075 +0.5 2.8 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02180 +0.5 0.4 thioredoxin TrxC compare
PFLU_RS14355 +0.5 1.0 DUF2388 domain-containing protein compare
PFLU_RS06170 +0.5 1.7 ribosomal RNA small subunit methyltransferase J compare
PFLU_RS16595 +0.5 1.6 hypothetical protein compare
PFLU_RS09540 +0.5 1.0 TIGR03745 family integrating conjugative element membrane protein compare
PFLU_RS18585 +0.5 1.1 high frequency lysogenization protein HflD compare
PFLU_RS08615 +0.5 0.9 YgdI/YgdR family lipoprotein compare
PFLU_RS28480 +0.5 2.1 sulfurtransferase compare
PFLU_RS15920 +0.5 2.2 4-hydroxyphenylacetate isomerase compare
PFLU_RS15540 +0.5 1.8 glyoxalase compare
PFLU_RS16840 +0.5 1.3 DUF2834 domain-containing protein compare
PFLU_RS20395 +0.5 3.4 deoxyribonuclease compare
PFLU_RS17750 +0.5 0.9 pirin family protein compare
PFLU_RS19730 +0.5 0.9 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS05720 +0.5 3.3 OmpA family protein compare
PFLU_RS16360 +0.5 2.0 hypothetical protein compare
PFLU_RS16075 +0.5 1.2 aldehyde dehydrogenase compare
PFLU_RS21820 +0.5 3.0 flagellin compare
PFLU_RS28315 +0.5 0.5 response regulator compare
PFLU_RS13605 +0.5 1.3 DUF4880 domain-containing protein compare
PFLU_RS03245 +0.5 2.8 hypothetical protein compare
PFLU_RS15455 +0.5 2.3 SDR family oxidoreductase compare
PFLU_RS21310 +0.5 2.0 Smr/MutS family protein compare
PFLU_RS10295 +0.5 1.8 HAD-IA family hydrolase compare
PFLU_RS23325 +0.5 3.1 GlxA family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For no stress control D-Glucose in Pseudomonas fluorescens SBW25-INTG

For no stress control D-Glucose across organisms