Experiment set13IT079 for Herbaspirillum seropedicae SmR1

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS09055 +5.8 23.6 hypothetical protein compare
HSERO_RS11460 +4.5 12.1 universal stress protein compare
HSERO_RS01970 +3.4 1.3 esterase compare
HSERO_RS22360 +3.2 1.6 lauroyl acyltransferase compare
HSERO_RS10105 +3.0 2.2 transcriptional regulator compare
HSERO_RS23800 +3.0 9.5 hypothetical protein compare
HSERO_RS23135 +2.3 1.5 membrane protein compare
HSERO_RS11375 +2.3 1.3 dienelactone hydrolase compare
HSERO_RS14790 +2.2 1.7 membrane protein compare
HSERO_RS17830 +2.2 1.4 rhodanese compare
HSERO_RS05990 +2.0 1.2 hypothetical protein compare
HSERO_RS03790 +1.8 1.8 hypothetical protein compare
HSERO_RS07675 +1.8 1.0 multidrug DMT transporter compare
HSERO_RS11180 +1.7 1.6 sugar kinase compare
HSERO_RS05355 +1.7 1.6 hypothetical protein compare
HSERO_RS11370 +1.7 1.5 hypothetical protein compare
HSERO_RS16790 +1.7 2.1 carbonic anhydrase compare
HSERO_RS16640 +1.5 1.6 ABC transporter substrate-binding protein compare
HSERO_RS05095 +1.5 1.0 LacI family transcription regulator compare
HSERO_RS19585 +1.5 4.6 peptidase M61 compare
HSERO_RS13770 +1.4 2.5 polysaccharide deacetylase compare
HSERO_RS03510 +1.4 1.0 proline aminopeptidase P II compare
HSERO_RS01110 +1.4 1.2 hypothetical protein compare
HSERO_RS22020 +1.3 3.4 membrane protein compare
HSERO_RS01425 +1.3 2.4 DNA-binding protein compare
HSERO_RS12325 +1.3 7.8 arabinose ABC transporter permease compare
HSERO_RS10295 +1.3 5.6 ATP synthase compare
HSERO_RS09210 +1.3 4.4 D-aminopeptidase compare
HSERO_RS14985 +1.3 3.4 transcriptional regulator compare
HSERO_RS04820 +1.3 3.9 C4-dicarboxylate ABC transporter compare
HSERO_RS14325 +1.3 1.4 hypothetical protein compare
HSERO_RS10765 +1.3 5.2 hypothetical protein compare
HSERO_RS06365 +1.3 1.5 hypothetical protein compare
HSERO_RS04770 +1.3 1.2 branched-chain amino acid ABC transporter ATP-binding protein compare
HSERO_RS23545 +1.3 1.6 sodium transporter compare
HSERO_RS18695 +1.2 2.0 hypothetical protein compare
HSERO_RS08260 +1.2 1.2 hypothetical protein compare
HSERO_RS18170 +1.2 2.7 nitrate reductase A subunit beta compare
HSERO_RS21200 +1.2 3.8 glycosyl transferase family 1 compare
HSERO_RS03685 +1.2 5.8 type VI secretion protein compare
HSERO_RS01210 +1.2 3.3 GntR family transcriptional regulator compare
HSERO_RS19665 +1.2 1.8 glycosyl hydrolase compare
HSERO_RS13890 +1.2 7.5 LuxR family transcriptional regulator compare
HSERO_RS05245 +1.2 0.9 hypothetical protein compare
HSERO_RS02865 +1.2 1.1 transcription regulator protein compare
HSERO_RS02350 +1.2 2.7 diadenosine tetraphosphatase compare
HSERO_RS10275 +1.1 3.0 flagellar motor switch protein FliM compare
HSERO_RS16825 +1.1 1.4 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS23595 +1.1 1.7 urea ABC transporter ATP-binding protein compare
HSERO_RS14575 +1.1 1.9 hypothetical protein compare
HSERO_RS12040 +1.1 1.1 LysR family transcriptional regulator compare
HSERO_RS00155 +1.1 1.1 ABC transporter compare
HSERO_RS02790 +1.1 2.9 hypothetical protein compare
HSERO_RS21205 +1.1 3.4 hypothetical protein compare
HSERO_RS22175 +1.1 1.3 hypothetical protein compare
HSERO_RS10310 +1.1 3.5 flagellar M-ring protein FliF compare
HSERO_RS12105 +1.1 6.0 RpiR family transcriptional regulator compare
HSERO_RS10150 +1.1 7.0 flagellar biosynthesis regulator FlhF compare
HSERO_RS02580 +1.1 0.9 hypothetical protein compare
HSERO_RS13885 +1.1 6.4 histidine kinase compare
HSERO_RS03675 +1.0 2.4 type VI secretion protein compare
HSERO_RS17165 +1.0 1.4 hypothetical protein compare
HSERO_RS13755 +1.0 2.5 hypothetical protein compare
HSERO_RS10285 +1.0 8.3 flagellar hook-length control protein compare
HSERO_RS21935 +1.0 1.0 cytochrome C compare
HSERO_RS02760 +1.0 1.7 hypothetical protein compare
HSERO_RS10140 +1.0 7.2 flagellar biosynthesis protein FlhB compare
HSERO_RS10305 +1.0 7.6 flagellar motor switch protein FliG compare
HSERO_RS07625 +1.0 1.7 tryptophanyl-tRNA synthetase compare
HSERO_RS24030 +1.0 0.8 hypothetical protein compare
HSERO_RS18590 +1.0 2.4 sodium:galactoside symporter compare
HSERO_RS10145 +1.0 8.1 flagellar biosynthesis protein FlhA compare
HSERO_RS12470 +1.0 1.3 chemotaxis protein CheY compare
HSERO_RS02405 +1.0 1.7 multidrug transporter compare
HSERO_RS10175 +1.0 5.5 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS21625 +1.0 1.1 NAD(FAD)-utilizing dehydrogenase compare
HSERO_RS05770 +1.0 3.3 benzoylformate decarboxylase compare
HSERO_RS10260 +1.0 7.4 flagellar biosynthesis protein FliP compare
HSERO_RS11800 +1.0 1.3 hypothetical protein compare
HSERO_RS21195 +0.9 5.9 hypothetical protein compare
HSERO_RS16700 +0.9 2.5 ABC transporter substrate-binding protein compare
HSERO_RS07140 +0.9 1.0 glutamine-synthetase adenylyltransferase compare
HSERO_RS18835 +0.9 2.7 hypothetical protein compare
HSERO_RS10290 +0.9 5.5 flagellar biosynthesis protein FliJ compare
HSERO_RS21220 +0.9 6.3 hypothetical protein compare
HSERO_RS18690 +0.9 2.8 short-chain dehydrogenase compare
HSERO_RS01985 +0.9 5.0 energy transducer TonB compare
HSERO_RS16490 +0.9 5.3 FimV compare
HSERO_RS10180 +0.9 1.8 flagellar biosynthesis protein FlgB compare
HSERO_RS12735 +0.9 1.8 GNAT family acetyltransferase compare
HSERO_RS14735 +0.9 1.0 LysR family transcripitonal regulator compare
HSERO_RS15160 +0.9 1.3 chemotaxis protein CheW compare
HSERO_RS10205 +0.9 4.4 flagellar basal body rod protein FlgG compare
HSERO_RS06825 +0.9 0.8 transcriptional regulator compare
HSERO_RS05275 +0.9 1.4 NADH-ubiquinone oxidoreductase subunit 6 compare
HSERO_RS16885 +0.9 0.3 magnesium-transporting ATPase compare
HSERO_RS02545 +0.9 1.3 membrane protein compare
HSERO_RS17285 +0.9 1.6 chromate transporter compare
HSERO_RS05160 +0.8 1.6 2-dehydro-3-deoxygalactonokinase dgoK (EC 2.7.1.58) (from data) compare
HSERO_RS05150 +0.8 1.5 galactonate dehydratase compare
HSERO_RS01525 +0.8 1.3 hypothetical protein compare
HSERO_RS23050 +0.8 1.5 transporter compare
HSERO_RS09930 +0.8 1.1 EPS biosynthesis protein compare
HSERO_RS11305 +0.8 1.1 membrane protein compare
HSERO_RS18345 +0.8 5.3 ABC transporter substrate-binding protein compare
HSERO_RS06620 +0.8 1.7 (2Fe-2S)-binding protein compare
HSERO_RS03190 +0.8 1.9 glutathione S-transferase compare
HSERO_RS18095 +0.8 1.5 antibiotic biosynthesis monooxygenase compare
HSERO_RS13850 +0.8 1.0 hypothetical protein compare
HSERO_RS15165 +0.8 2.2 chemotaxis protein compare
HSERO_RS15865 +0.8 2.4 antibiotic biosynthesis monooxygenase compare
HSERO_RS19740 +0.8 1.8 transcriptional regulator compare
HSERO_RS00145 +0.8 0.9 hypothetical protein compare
HSERO_RS01490 +0.8 1.2 guanylate cyclase compare
HSERO_RS03920 +0.8 0.9 hypothetical protein compare
HSERO_RS22310 +0.8 3.5 LysR family transcriptional regulator compare
HSERO_RS14970 +0.8 5.3 flagellar motor protein MotB compare
HSERO_RS19895 +0.8 2.1 AraC family transcriptional regulator compare
HSERO_RS12555 +0.8 1.2 major facilitator transporter compare
HSERO_RS05995 +0.8 1.1 bacterioferritin compare
HSERO_RS00315 +0.8 1.7 amino acid ABC transporter permease compare
HSERO_RS03705 +0.8 1.8 EvpB family type VI secretion protein compare
HSERO_RS14950 +0.8 0.8 purine-binding chemotaxis protein compare
HSERO_RS03910 +0.8 1.5 hypothetical protein compare
HSERO_RS01725 +0.8 1.0 lysophospholipase compare
HSERO_RS04150 +0.8 1.1 hypothetical protein compare
HSERO_RS21325 +0.8 1.4 membrane protein compare
HSERO_RS08265 +0.8 0.9 hypothetical protein compare
HSERO_RS05395 +0.8 2.7 succinate-semialdehyde dehdyrogenase compare
HSERO_RS06530 +0.8 0.9 muconolactone delta-isomerase compare
HSERO_RS03770 +0.8 4.6 type VI secretion protein compare
HSERO_RS10215 +0.8 3.8 flagellar P-ring protein FlgI compare
HSERO_RS18885 +0.8 1.4 gamma-glutamyltransferase compare
HSERO_RS02365 +0.8 0.8 hypothetical protein compare
HSERO_RS23195 +0.8 1.5 LuxR family transcriptional regulator compare
HSERO_RS10550 +0.7 1.3 histidine kinase compare
HSERO_RS03540 +0.7 0.5 dimethyladenosine transferase compare
HSERO_RS10265 +0.7 4.4 flagellar biosynthesis protein FliO compare
HSERO_RS18225 +0.7 2.0 pilus assembly protein compare
HSERO_RS14315 +0.7 1.9 hypothetical protein compare
HSERO_RS21210 +0.7 3.7 membrane protein compare
HSERO_RS15835 +0.7 1.0 aspartate aminotransferase compare
HSERO_RS10990 +0.7 1.5 chemotaxis protein CheY compare
HSERO_RS05280 +0.7 1.3 hypothetical protein compare
HSERO_RS14975 +0.7 4.4 flagellar motor protein MotA compare
HSERO_RS02245 +0.7 1.1 hypothetical protein compare
HSERO_RS03690 +0.7 3.9 membrane protein compare
HSERO_RS13800 +0.7 2.2 glycosyl transferase family 1 compare
HSERO_RS23905 +0.7 3.6 cytochrome C550 compare
HSERO_RS02030 +0.7 1.3 phospholipid-binding protein compare
HSERO_RS06025 +0.7 2.3 histidine kinase compare
HSERO_RS06720 +0.7 1.3 Rieske (2Fe-2S) protein compare
HSERO_RS03720 +0.7 2.7 type VI secretion protein compare
HSERO_RS22890 +0.7 3.1 hypothetical protein compare
HSERO_RS07110 +0.7 1.4 16S rRNA methyltransferase compare
HSERO_RS18680 +0.7 1.9 hypothetical protein compare
HSERO_RS21490 +0.7 2.0 hypothetical protein compare
HSERO_RS21225 +0.7 3.9 hypothetical protein compare
HSERO_RS14240 +0.7 1.0 molybdenum ABC transporter ATP-binding protein compare
HSERO_RS19770 +0.7 1.2 hypothetical protein compare
HSERO_RS11155 +0.7 1.2 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS02990 +0.7 1.4 ABC transporter substrate-binding protein compare
HSERO_RS10345 +0.7 1.1 flagellar hook protein compare
HSERO_RS07435 +0.7 1.9 formate dehydrogenase accessory protein FdhD compare
HSERO_RS23255 +0.7 2.0 ABC transporter permease compare
HSERO_RS13750 +0.7 1.4 chromosome partitioning ATPase compare
HSERO_RS21745 +0.7 1.4 5'-methylthioadenosine nucleosidase compare
HSERO_RS15205 +0.7 1.4 LysR family transcriptional regulator compare
HSERO_RS05300 +0.7 1.8 isomerase compare
HSERO_RS11165 +0.7 1.6 arylesterase compare
HSERO_RS18285 +0.7 2.4 Rieske (2Fe-2S) protein compare
HSERO_RS08225 +0.7 2.5 alpha/beta hydrolase compare
HSERO_RS02130 +0.7 1.4 thiazole synthase compare
HSERO_RS03555 +0.7 0.7 chloride channel protein compare
HSERO_RS20675 +0.7 2.0 diguanylate cyclase compare
HSERO_RS06960 +0.7 1.4 chemotaxis protein CheY compare
HSERO_RS14355 +0.7 1.3 hypothetical protein compare
HSERO_RS22270 +0.7 2.0 MFS transporter compare
HSERO_RS03815 +0.7 3.0 type VI secretion protein compare
HSERO_RS15170 +0.7 1.5 membrane protein compare
HSERO_RS10315 +0.7 4.1 flagellar hook-basal body protein FliE compare
HSERO_RS13300 +0.7 1.9 cobalt-precorrin-6Y C(5)-methyltransferase compare
HSERO_RS13415 +0.7 0.9 VdlD compare
HSERO_RS17160 +0.7 1.2 hypothetical protein compare
HSERO_RS12515 +0.7 1.0 glycogen synthase compare
HSERO_RS08665 +0.7 1.1 hypothetical protein compare
HSERO_RS03680 +0.7 1.0 type VI secretion system protein ImpK compare
HSERO_RS09750 +0.7 2.3 8-amino-7-oxononanoate synthase compare
HSERO_RS22285 +0.7 0.6 GntR family transcriptional regulator compare
HSERO_RS04845 +0.7 1.0 ABC transporter compare
HSERO_RS04790 +0.7 1.7 acyl-CoA dehydrogenase compare
HSERO_RS23080 +0.7 1.6 RND transporter compare
HSERO_RS02775 +0.7 1.0 hypothetical protein compare
HSERO_RS06700 +0.7 0.9 LuxR family transcriptional regulator compare
HSERO_RS14465 +0.7 1.1 porin compare
HSERO_RS12295 +0.7 2.6 histidine kinase compare
HSERO_RS12690 +0.7 1.7 transcriptional regulator compare
HSERO_RS19175 +0.7 1.9 twitching motility protein compare
HSERO_RS11065 +0.7 1.1 quinolinate synthetase compare
HSERO_RS16770 +0.7 1.3 beta-lactamase compare


Specific Phenotypes

For 1 genes in this experiment