Experiment set13IT078 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 1 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -3.9 -4.5 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3574 -3.0 -12.5 Mannose-6-phosphate isomerase (EC 5.3.1.8) conserved
Pf6N2E2_5679 -2.7 -4.8 hypothetical protein compare
Pf6N2E2_6140 -2.6 -1.4 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_5527 -2.6 -2.9 Cold shock protein CspC compare
Pf6N2E2_1758 -2.3 -1.5 Transcriptional regulator, MarR family compare
Pf6N2E2_43 -2.3 -5.2 Histidine permease YuiF compare
Pf6N2E2_3095 -2.0 -1.5 hypothetical protein compare
Pf6N2E2_4464 -1.9 -1.8 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_1625 -1.9 -2.9 Ferric reductase (1.6.99.14) compare
Pf6N2E2_1635 -1.8 -3.4 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_5677 -1.8 -2.1 Carbon storage regulator compare
Pf6N2E2_1634 -1.8 -4.0 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_3569 -1.7 -1.6 hypothetical protein compare
Pf6N2E2_2068 -1.6 -2.9 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_4153 -1.6 -4.0 Sensory box histidine kinase compare
Pf6N2E2_923 -1.6 -1.9 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_2064 -1.5 -2.1 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3062 -1.5 -2.1 Membrane-associated zinc metalloprotease compare
Pf6N2E2_122 -1.5 -2.1 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2218 -1.5 -3.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_4797 -1.5 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4057 -1.5 -1.3 lipoprotein, putative compare
Pf6N2E2_1463 -1.5 -1.8 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_1636 -1.5 -4.9 Ferrichrome-iron receptor compare
Pf6N2E2_1032 -1.5 -1.6 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_4661 -1.4 -2.5 KluA regulatory protein compare
Pf6N2E2_241 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_2755 -1.4 -2.8 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1283 -1.4 -1.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4305 -1.4 -1.3 FIG00959590: hypothetical protein compare
Pf6N2E2_2674 -1.4 -1.4 FIG00953856: hypothetical protein compare
Pf6N2E2_3908 -1.4 -3.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5806 -1.3 -2.6 hypothetical protein compare
Pf6N2E2_2264 -1.3 -2.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_434 -1.3 -1.9 hypothetical protein compare
Pf6N2E2_3321 -1.3 -4.6 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_1633 -1.3 -2.7 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_1288 -1.3 -1.9 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1168 -1.3 -2.9 Transposase compare
Pf6N2E2_1305 -1.3 -2.2 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_2447 -1.3 -4.8 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_3454 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_2252 -1.2 -3.4 NreA-like protein compare
Pf6N2E2_2519 -1.2 -1.0 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_280 -1.2 -2.5 hypothetical protein compare
Pf6N2E2_3004 -1.2 -2.2 Prophage baseplate assembly protein V compare
Pf6N2E2_114 -1.2 -2.8 Polysaccharide biosynthesis protein compare
Pf6N2E2_3612 -1.2 -2.1 HflK protein compare
Pf6N2E2_2429 -1.2 -2.6 Glutathione-regulated potassium-efflux system protein KefB compare
Pf6N2E2_3498 -1.2 -2.9 FIG00953349: hypothetical protein compare
Pf6N2E2_3323 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_2123 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_4453 -1.2 -8.0 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4071 -1.2 -3.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_1632 -1.2 -2.2 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_159 -1.1 -2.9 DNA damage resistance protein (from data) compare
Pf6N2E2_1834 -1.1 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4732 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_2646 -1.1 -0.9 FIG00953416: hypothetical protein compare
Pf6N2E2_3199 -1.1 -2.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_1683 -1.1 -2.3 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_1981 -1.1 -2.8 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_2778 -1.1 -2.5 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_1705 -1.1 -1.5 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2574 -1.1 -1.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_5720 -1.1 -4.1 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_5746 -1.1 -1.3 Cobalamin synthase compare
Pf6N2E2_2681 -1.1 -1.5 3-phosphoglycerate kinase compare
Pf6N2E2_282 -1.1 -1.1 GNAT family acetyltransferase YjcF compare
Pf6N2E2_2061 -1.1 -2.0 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_4075 -1.1 -5.2 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_855 -1.0 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_1626 -1.0 -4.6 Putative ATP-binding component of a transport system compare
Pf6N2E2_5862 -1.0 -1.1 Lipoprotein, putative compare
Pf6N2E2_205 -1.0 -3.6 hypothetical protein compare
Pf6N2E2_1870 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_3339 -1.0 -5.0 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Pf6N2E2_902 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1863 -1.0 -3.0 putative dioxygenase hydroxylase component compare
Pf6N2E2_4072 -1.0 -4.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_3251 -1.0 -5.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
Pf6N2E2_2007 -1.0 -2.6 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_5536 -1.0 -1.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_3727 -1.0 -2.1 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) compare
Pf6N2E2_34 -1.0 -2.9 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_737 -1.0 -1.2 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_1723 -1.0 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2306 -1.0 -2.9 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_5394 -1.0 -1.9 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_3940 -1.0 -4.9 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_1081 -1.0 -1.5 probable membrane protein YPO3302 compare
Pf6N2E2_3325 -0.9 -1.4 ABC transporter, ATP-binding protein compare
Pf6N2E2_3100 -0.9 -1.9 FIG00953063: hypothetical protein compare
Pf6N2E2_3190 -0.9 -3.1 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_6075 -0.9 -2.3 Chromosome segregation ATPases compare
Pf6N2E2_3830 -0.9 -2.1 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_2207 -0.9 -2.0 cytochrome b(561) compare
Pf6N2E2_3240 -0.9 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_5623 -0.9 -2.1 YciL protein compare
Pf6N2E2_4918 -0.9 -1.4 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_464 -0.9 -1.7 Sensory histidine kinase QseC compare
Pf6N2E2_928 -0.9 -1.8 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_2128 -0.9 -3.1 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_3040 -0.9 -4.3 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_2503 -0.9 -1.1 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_1671 -0.9 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_2518 -0.9 -1.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4447 -0.9 -6.9 Cytochrome c family protein conserved
Pf6N2E2_1545 -0.9 -1.5 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_2081 -0.9 -1.4 putative exported protein compare
Pf6N2E2_2732 -0.9 -2.9 Transcriptional regulator, LysR family compare
Pf6N2E2_5678 -0.9 -3.6 hypothetical protein compare
Pf6N2E2_4599 -0.9 -1.5 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_4829 -0.9 -3.5 OsmC/Ohr family protein compare
Pf6N2E2_1315 -0.8 -1.5 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_247 -0.8 -2.6 Transcriptional regulator, AraC family compare
Pf6N2E2_6065 -0.8 -1.7 ABC transporter in pyoverdin gene cluster, periplasmic component compare
Pf6N2E2_81 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_128 -0.8 -3.3 AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system compare
Pf6N2E2_5986 -0.8 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1631 -0.8 -3.2 SyrP-like protein compare
Pf6N2E2_5758 -0.8 -1.4 FIG00957314: hypothetical protein compare
Pf6N2E2_3252 -0.8 -3.0 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_443 -0.8 -1.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1804 -0.8 -2.4 Immune-responsive protein 1 compare
Pf6N2E2_3656 -0.8 -5.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_4974 -0.8 -4.1 DedA protein compare
Pf6N2E2_4424 -0.8 -2.0 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_6055 -0.8 -2.5 Homoserine kinase (EC 2.7.1.39) compare
Pf6N2E2_1563 -0.8 -2.6 Transcriptional regulator, AraC family compare
Pf6N2E2_953 -0.8 -1.1 FIG00958851: hypothetical protein compare
Pf6N2E2_2022 -0.8 -1.3 BarA-associated response regulator UvrY (= GacA = SirA) compare
Pf6N2E2_895 -0.8 -2.0 Transcriptional regulator, HxlR family compare
Pf6N2E2_6070 -0.8 -1.5 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_5669 -0.8 -3.5 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_4206 -0.8 -1.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_963 -0.8 -2.2 probable exported protein STY4558 compare
Pf6N2E2_1905 -0.8 -2.4 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_3255 -0.8 -1.8 YrbA protein compare
Pf6N2E2_4276 -0.8 -2.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_4699 -0.8 -3.0 FIG00953563: hypothetical protein compare
Pf6N2E2_3762 -0.8 -2.8 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_160 -0.8 -1.5 hypothetical protein compare
Pf6N2E2_2075 -0.8 -3.0 Peptidase, U7 family compare
Pf6N2E2_4612 -0.8 -2.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3872 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_813 -0.8 -1.3 Response regulator compare
Pf6N2E2_74 -0.8 -1.3 DedD protein compare
Pf6N2E2_5723 -0.8 -3.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_5999 -0.7 -2.2 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf6N2E2_3322 -0.7 -6.5 Peptide synthetase compare
Pf6N2E2_1156 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_3611 -0.7 -1.0 HflC protein compare
Pf6N2E2_5155 -0.7 -1.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4074 -0.7 -6.1 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_4545 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_3270 -0.7 -2.2 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_959 -0.7 -1.7 putative membrane protein compare
Pf6N2E2_4162 -0.7 -1.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4762 -0.7 -1.0 Biotin synthesis protein BioH compare
Pf6N2E2_5711 -0.7 -3.1 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_1839 -0.7 -1.4 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase (EC 1.1.1.-) compare
Pf6N2E2_1653 -0.7 -2.4 NADH:flavin oxidoreductase/NADH oxidase compare
Pf6N2E2_1603 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_5049 -0.7 -1.2 acetyltransferase, GNAT family compare
Pf6N2E2_58 -0.7 -1.2 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_71 -0.7 -2.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf6N2E2_405 -0.7 -0.7 hypothetical protein compare
Pf6N2E2_4427 -0.7 -1.1 FIG00954215: hypothetical protein compare
Pf6N2E2_4916 -0.7 -2.0 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_993 -0.7 -2.8 Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1) compare
Pf6N2E2_3122 -0.7 -0.9 Chemotaxis signal transduction protein compare
Pf6N2E2_3448 -0.7 -2.3 membrane protein, putative compare
Pf6N2E2_1894 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_4047 -0.7 -2.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_816 -0.7 -2.1 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_492 -0.7 -2.6 Transcriptional regulator RutR of pyrimidine catabolism (TetR family) compare
Pf6N2E2_3720 -0.7 -1.8 FIG027190: Putative transmembrane protein compare
Pf6N2E2_2835 -0.7 -1.6 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_1606 -0.7 -1.9 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_1751 -0.7 -2.7 Aldehyde dehydrogenase A (EC 1.2.1.22) / Glycolaldehyde dehydrogenase (EC 1.2.1.21) compare
Pf6N2E2_2175 -0.7 -1.8 Transcriptional regulator, RpiR family compare
Pf6N2E2_647 -0.7 -1.0 General secretion pathway protein G compare
Pf6N2E2_2702 -0.7 -2.3 FIG00962464: hypothetical protein compare
Pf6N2E2_2794 -0.7 -1.3 putative membrane protein compare
Pf6N2E2_992 -0.7 -2.0 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf6N2E2_2886 -0.7 -5.3 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_3337 -0.7 -3.4 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) compare
Pf6N2E2_1323 -0.7 -1.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4706 -0.7 -1.6 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_442 -0.7 -1.6 FIG00962345: hypothetical protein compare
Pf6N2E2_5584 -0.7 -1.2 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2727 -0.7 -2.5 Ribonuclease D (EC 3.1.26.3) compare
Pf6N2E2_5160 -0.7 -0.4 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_1049 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_5430 -0.7 -2.3 Transglycosylase, Slt family compare
Pf6N2E2_2340 -0.7 -1.5 Transcriptional regulator, GntR family compare
Pf6N2E2_2282 -0.6 -1.1 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4048 -0.6 -3.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare


Specific Phenotypes

For 4 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms