Experiment set13IT074 for Herbaspirillum seropedicae SmR1

Compare to:

Parafilmed volatile agar plate with Trichoderma atroviridae IMI

200 most important genes:

  gene name fitness t score description  
HSERO_RS21035 -6.1 -3.0 hypothetical protein compare
HSERO_RS10020 -5.7 -2.7 flippase compare
HSERO_RS10035 -5.2 -3.7 hypothetical protein compare
HSERO_RS04585 -5.1 -24.2 hypothetical protein compare
HSERO_RS20985 -4.9 -1.4 serine acetyltransferase compare
HSERO_RS02145 -4.4 -1.3 ferritin compare
HSERO_RS23945 -4.2 -2.7 cobyric acid synthase CobQ compare
HSERO_RS00815 -4.2 -2.5 sulfurtransferase compare
HSERO_RS08115 -4.1 -1.2 acyl-CoA-binding protein compare
HSERO_RS18990 -3.9 -5.8 pyrroline-5-carboxylate reductase compare
HSERO_RS21005 -3.8 -7.9 asparagine synthase compare
HSERO_RS21010 -3.7 -8.9 LPS biosynthesis protein compare
HSERO_RS20980 -3.6 -6.2 oxidoreductase compare
HSERO_RS17110 -3.6 -2.3 ribonuclease H compare
HSERO_RS13960 -3.5 -3.0 hypothetical protein compare
HSERO_RS09725 -3.4 -8.1 ABC transporter compare
HSERO_RS19805 -3.4 -5.7 glycosyl transferase compare
HSERO_RS03880 -3.4 -1.4 hypothetical protein compare
HSERO_RS20990 -3.4 -6.2 aminotransferase DegT compare
HSERO_RS21025 -3.2 -6.1 hypothetical protein compare
HSERO_RS15630 -3.2 -0.9 exodeoxyribonuclease III compare
HSERO_RS08535 -3.2 -5.8 glycine/betaine ABC transporter substrate-binding protein compare
HSERO_RS21060 -3.1 -4.7 hypothetical protein compare
HSERO_RS17530 -3.0 -4.6 RpiR family transcriptional regulator compare
HSERO_RS09990 -3.0 -1.9 glycosyl transferase compare
HSERO_RS12975 -3.0 -1.6 phytoene synthase compare
HSERO_RS08530 -2.6 -6.0 glycine/betaine ABC transporter permease compare
HSERO_RS02330 -2.6 -5.1 aspartate carbamoyltransferase compare
HSERO_RS06940 -2.6 -2.7 23S rRNA methyltransferase compare
HSERO_RS13560 -2.5 -5.9 transcriptional regulator compare
HSERO_RS03780 -2.5 -4.3 type VI secretion protein compare
HSERO_RS04340 -2.5 -7.1 gamma-glutamyl ligase compare
HSERO_RS12300 -2.5 -3.0 hypothetical protein compare
HSERO_RS21040 -2.4 -3.6 3-oxoacyl-ACP synthase compare
HSERO_RS20970 -2.4 -5.6 NDP-N-acetyl-D-mannosaminuronate dehydrogenase compare
HSERO_RS20615 -2.4 -2.3 phenylacetate-CoA oxygenase subunit PaaB compare
HSERO_RS11885 -2.3 -1.8 hypothetical protein compare
HSERO_RS05540 -2.3 -2.3 cytochrome C' compare
HSERO_RS09740 -2.3 -5.1 histidine kinase compare
HSERO_RS04325 -2.3 -3.8 helicase I compare
HSERO_RS21065 -2.3 -6.4 hypothetical protein compare
HSERO_RS21055 -2.3 -3.7 hypothetical protein compare
HSERO_RS17980 -2.2 -2.2 GTP-binding protein compare
HSERO_RS19265 -2.2 -1.1 LysR family transcriptional regulator compare
HSERO_RS09720 -2.2 -2.6 membrane protein compare
HSERO_RS17900 -2.2 -1.7 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS21450 -2.2 -2.6 lipid A biosynthesis acyltransferase compare
HSERO_RS02260 -2.2 -2.8 DNA polymerase I compare
HSERO_RS03450 -2.1 -1.8 energy transducer protein TonB compare
HSERO_RS19090 -2.0 -1.7 C4-dicarboxylate ABC transporter compare
HSERO_RS09730 -2.0 -2.6 glycoside hydrolase family 43 compare
HSERO_RS04335 -1.9 -1.7 sodium:proton antiporter compare
HSERO_RS03510 -1.9 -4.2 proline aminopeptidase P II compare
HSERO_RS10340 -1.9 -3.5 flagellar biosynthesis protein FliS compare
HSERO_RS10815 -1.8 -3.2 chromosome segregation protein SMC compare
HSERO_RS09050 -1.8 -3.1 2-aminoadipate aminotransferase compare
HSERO_RS23475 -1.8 -4.0 hydroxymethylglutaryl-CoA lyase compare
HSERO_RS19630 -1.8 -0.5 AMP nucleosidase compare
HSERO_RS08605 -1.8 -1.9 Hsp33 chaperonin compare
HSERO_RS16030 -1.8 -1.8 cytochrome oxidase assembly protein compare
HSERO_RS03810 -1.8 -2.2 hypothetical protein compare
HSERO_RS15435 -1.7 -2.8 enoyl-CoA hydratase compare
HSERO_RS16070 -1.7 -1.4 cytochrome biogenesis protein compare
HSERO_RS09155 -1.7 -6.5 DNA topoisomerase IV subunit B compare
HSERO_RS18980 -1.7 -1.6 hypothetical protein compare
HSERO_RS06650 -1.7 -2.5 MarR family transcriptional regulator compare
HSERO_RS09145 -1.7 -3.9 DNA topoisomerase IV subunit A compare
HSERO_RS05970 -1.7 -1.2 ABC transporter compare
HSERO_RS09455 -1.6 -2.0 NAD synthetase compare
HSERO_RS20625 -1.6 -1.1 phenylacetate-CoA oxygenase compare
HSERO_RS20820 -1.6 -0.8 ABC transporter ATP-binding protein compare
HSERO_RS10460 -1.6 -0.9 homoserine dehydrogenase compare
HSERO_RS07275 -1.6 -3.4 D-amino acid dehydrogenase compare
HSERO_RS00450 -1.6 -2.1 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS20975 -1.6 -3.9 UDP-galactose-4-epimerase compare
HSERO_RS02215 -1.6 -0.4 D-arabinitol 4-dehydrogenase compare
HSERO_RS00810 -1.5 -1.5 glutaredoxin compare
HSERO_RS16405 -1.5 -3.5 peptidase M50 compare
HSERO_RS21530 -1.5 -4.0 cytochrome C550 compare
HSERO_RS04330 -1.5 -3.8 ATP-dependent exonuclease compare
HSERO_RS20320 -1.5 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS02180 -1.5 -2.7 fructokinase compare
HSERO_RS07910 -1.5 -2.7 alkylhydroperoxidase compare
HSERO_RS23655 -1.4 -1.3 phosphonate ABC transporter permease compare
HSERO_RS06170 -1.4 -1.5 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS21475 -1.4 -1.3 recombinase XerC compare
HSERO_RS02255 -1.4 -2.8 decarboxylase compare
HSERO_RS17105 -1.4 -1.2 DNA polymerase III subunit epsilon compare
HSERO_RS01965 -1.4 -4.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
HSERO_RS20310 -1.4 -3.1 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS12920 -1.3 -0.9 trigger factor compare
HSERO_RS03445 -1.3 -3.4 biopolymer transport transmembrane protein compare
HSERO_RS21000 -1.3 -3.6 aminotransferase DegT compare
HSERO_RS13000 -1.3 -4.6 chemotaxis protein CheY compare
HSERO_RS01815 -1.3 -3.0 gamma-glutamyl kinase compare
HSERO_RS10395 -1.3 -1.5 phosphate transport regulator compare
HSERO_RS07380 -1.3 -1.2 hypothetical protein compare
HSERO_RS14375 -1.3 -1.9 IscN protein compare
HSERO_RS09915 -1.3 -1.4 transcriptional regulator compare
HSERO_RS03285 -1.3 -0.8 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS01315 -1.3 -1.8 transcriptional regulator compare
HSERO_RS09745 -1.3 -1.0 chemotaxis protein CheY compare
HSERO_RS10010 -1.3 -2.3 UDP-glucose 6-dehydrogenase compare
HSERO_RS20330 -1.3 -3.6 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS04150 -1.3 -1.0 hypothetical protein compare
HSERO_RS08340 -1.2 -3.4 AsnC family transcriptional regulator compare
HSERO_RS07970 -1.2 -1.4 formyltetrahydrofolate deformylase compare
HSERO_RS07470 -1.2 -1.0 ketosteroid isomerase compare
HSERO_RS01870 -1.2 -3.7 ABC transporter permease compare
HSERO_RS21020 -1.2 -4.2 imidazole glycerol phosphate synthase compare
HSERO_RS23450 -1.2 -2.2 hypothetical protein compare
HSERO_RS20835 -1.2 -2.6 ABC transporter substrate-binding protein compare
HSERO_RS23440 -1.2 -2.9 isovaleryl-CoA dehydrogenase compare
HSERO_RS16475 -1.2 -1.4 tryptophan synthase subunit alpha compare
HSERO_RS08105 -1.2 -3.1 sodium:proton antiporter compare
HSERO_RS18550 -1.2 -1.3 excinuclease ATPase subunit compare
HSERO_RS21935 -1.2 -0.9 cytochrome C compare
HSERO_RS21080 -1.2 -2.1 glycosyl transferase compare
HSERO_RS02160 -1.2 -1.2 DNA-dependent helicase compare
HSERO_RS21480 -1.2 -0.6 transcriptional regulator compare
HSERO_RS22285 -1.2 -1.4 GntR family transcriptional regulator compare
HSERO_RS09660 -1.1 -1.3 ribonuclease III compare
HSERO_RS20750 -1.1 -4.3 cytochrome C oxidase subunit I compare
HSERO_RS17220 -1.1 -2.4 membrane protein compare
HSERO_RS02090 -1.1 -0.7 Holliday junction DNA helicase RuvA compare
HSERO_RS19525 -1.1 -1.7 PTS sugar transporter subunit IIA compare
HSERO_RS00795 -1.1 -2.0 glycerol-3-phosphate dehydrogenase compare
HSERO_RS11010 -1.1 -1.3 RnfH compare
HSERO_RS22040 -1.1 -1.2 CDP-glucose 4,6-dehydratase compare
HSERO_RS20250 -1.1 -0.5 large conductance mechanosensitive channel protein MscL compare
HSERO_RS16075 -1.1 -0.7 coproporphyrinogen III oxidase compare
HSERO_RS21090 -1.1 -3.4 dTDP-4-dehydrorhamnose reductase compare
HSERO_RS00805 -1.1 -0.9 preprotein translocase subunit SecB compare
HSERO_RS08285 -1.1 -2.9 amino acid ABC transporter ATP-binding protein compare
HSERO_RS14930 -1.1 -1.8 aldolase compare
HSERO_RS01510 -1.1 -4.5 membrane protein compare
HSERO_RS09640 -1.1 -2.2 peptidase compare
HSERO_RS15575 -1.1 -0.8 uroporphyrin-III C-methyltransferase compare
HSERO_RS01455 -1.1 -1.0 hypothetical protein compare
HSERO_RS01365 -1.1 -1.9 TetR family transcriptional regulator compare
HSERO_RS20325 -1.1 -3.3 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS09735 -1.0 -2.4 hypothetical protein compare
HSERO_RS09290 -1.0 -2.8 ribonuclease R compare
HSERO_RS08290 -1.0 -2.2 leucine/isoleucine/valine transporter ATP-binding subunit compare
HSERO_RS20610 -1.0 -1.2 phenylacetate-CoA oxygenase subunit PaaA compare
HSERO_RS17155 -1.0 -1.8 RNA helicase compare
HSERO_RS00080 -1.0 -4.0 histidine kinase compare
HSERO_RS21015 -1.0 -3.3 imidazole glycerol phosphate synthase compare
HSERO_RS16835 -1.0 -3.5 phosphatidylglycerophosphatase compare
HSERO_RS21150 -1.0 -2.0 aldolase compare
HSERO_RS23640 -1.0 -2.2 Ni/Fe hydrogenase compare
HSERO_RS08275 -1.0 -3.1 branched-chain amino acid transporter permease subunit LivH compare
HSERO_RS18015 -1.0 -1.9 transcriptional regulator compare
HSERO_RS03500 -1.0 -1.3 uracil phosphoribosyltransferase compare
HSERO_RS19590 -1.0 -0.6 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS20135 -1.0 -1.3 type VI secretion protein compare
HSERO_RS07395 -1.0 -1.6 aldose 1-epimerase compare
HSERO_RS16885 -1.0 -0.3 magnesium-transporting ATPase compare
HSERO_RS02015 -1.0 -1.8 peptidase M23 compare
HSERO_RS06165 -1.0 -3.0 ATP-dependent DNA helicase RecG compare
HSERO_RS08075 -1.0 -0.8 ferredoxin compare
HSERO_RS18600 -0.9 -0.9 transcriptional regulator compare
HSERO_RS09435 -0.9 -1.1 S-adenosylmethionine-dependent methyltransferase compare
HSERO_RS10405 -0.9 -1.3 phosphate starvation protein PhoH compare
HSERO_RS08515 -0.9 -1.7 diguanylate cyclase compare
HSERO_RS16370 -0.9 -0.8 peptidyl-prolyl cis-trans isomerase compare
HSERO_RS06045 -0.9 -2.0 hypothetical protein compare
HSERO_RS11830 -0.9 -1.2 hypothetical protein compare
HSERO_RS22530 -0.9 -4.3 membrane protein compare
HSERO_RS22325 -0.9 -1.4 hypothetical protein compare
HSERO_RS10165 -0.9 -1.2 flagellar biosynthesis protein compare
HSERO_RS13270 -0.9 -2.4 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS07840 -0.9 -2.1 methionine ABC transporter substrate-binding protein compare
HSERO_RS18455 -0.9 -1.7 phosphoglycolate phosphatase compare
HSERO_RS16190 -0.9 -4.2 hypothetical protein compare
HSERO_RS02775 -0.9 -0.9 hypothetical protein compare
HSERO_RS08795 -0.9 -1.5 transcriptional regulator compare
HSERO_RS02650 -0.9 -4.0 dihydroxy-acid dehydratase compare
HSERO_RS18860 -0.9 -1.7 potassium-transporting ATPase subunit C compare
HSERO_RS14840 -0.9 -1.0 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS18685 -0.9 -0.7 hypothetical protein compare
HSERO_RS21340 -0.9 -2.3 septum formation inhibitor protein compare
HSERO_RS19515 -0.9 -1.9 7-cyano-7-deazaguanine reductase compare
HSERO_RS07300 -0.9 -2.0 glutamate--cysteine ligase compare
HSERO_RS12840 -0.9 -1.4 Crp/Fnr family transcriptional regulator compare
HSERO_RS04890 -0.9 -3.2 Fosmidomycin resistance protein compare
HSERO_RS09955 -0.9 -2.7 chain-length determining protein compare
HSERO_RS10125 -0.8 -1.8 chemotaxis protein compare
HSERO_RS05265 -0.8 -2.2 L-fucono-1,5-lactonase (from data) compare
HSERO_RS17345 -0.8 -2.1 AsnC family transcriptional regulator compare
HSERO_RS10665 -0.8 -2.5 coproporphyrinogen III oxidase compare
HSERO_RS02760 -0.8 -0.9 hypothetical protein compare
HSERO_RS23185 -0.8 -0.5 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS11465 -0.8 -1.1 sodium:proton antiporter compare
HSERO_RS06660 -0.8 -1.3 flavin reductase compare
HSERO_RS18965 -0.8 -1.2 thiopurine S-methyltransferase compare
HSERO_RS10230 -0.8 -3.6 flagellar hook-filament junction protein compare
HSERO_RS20350 -0.8 -2.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS14025 -0.8 -1.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
HSERO_RS03190 -0.8 -1.7 glutathione S-transferase compare


Specific Phenotypes

For 1 genes in this experiment