Experiment set13IT073 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cobalt chloride hexahydrate 0.6 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_563 -3.5 -7.8 Serine transporter conserved
Pf6N2E2_2674 -3.5 -1.5 FIG00953856: hypothetical protein compare
Pf6N2E2_2018 -3.3 -2.2 hypothetical protein compare
Pf6N2E2_4612 -3.1 -2.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3661 -3.1 -5.9 hypothetical protein compare
Pf6N2E2_4071 -3.1 -4.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3516 -2.9 -3.3 Probable transmembrane protein compare
Pf6N2E2_4810 -2.8 -7.4 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_3003 -2.8 -2.7 Bacteriophage protein GP46 compare
Pf6N2E2_3667 -2.8 -1.9 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5527 -2.8 -2.6 Cold shock protein CspC compare
Pf6N2E2_4187 -2.7 -6.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_3607 -2.7 -7.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5111 -2.6 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4453 -2.6 -12.2 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5679 -2.6 -3.1 hypothetical protein compare
Pf6N2E2_623 -2.6 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_4120 -2.5 -11.8 Trk system potassium uptake protein TrkA compare
Pf6N2E2_659 -2.5 -2.4 Transcriptional regulatory protein ompR compare
Pf6N2E2_2518 -2.5 -2.9 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4382 -2.5 -7.2 FIG00953403: hypothetical protein compare
Pf6N2E2_5150 -2.5 -4.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_1534 -2.5 -1.4 Probable transmembrane protein compare
Pf6N2E2_6140 -2.4 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_4797 -2.4 -1.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3283 -2.3 -6.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_4391 -2.3 -5.1 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_5346 -2.3 -1.6 rRNA small subunit methyltransferase I compare
Pf6N2E2_4155 -2.2 -8.0 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3612 -2.2 -2.1 HflK protein compare
Pf6N2E2_2634 -2.2 -7.8 Potassium uptake protein TrkH compare
Pf6N2E2_4413 -2.1 -5.7 FIG004064: hypothetical protein compare
Pf6N2E2_4276 -2.1 -3.5 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1288 -2.1 -2.3 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_5669 -2.1 -6.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_446 -2.1 -5.0 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_4360 -2.0 -7.5 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_525 -2.0 -5.0 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3079 -2.0 -6.3 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_2106 -2.0 -1.6 hypothetical protein compare
Pf6N2E2_5544 -2.0 -5.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_945 -2.0 -2.6 Transcriptional regulator, TetR family compare
Pf6N2E2_3847 -2.0 -2.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_4636 -2.0 -4.2 periplasmic binding protein, putative compare
Pf6N2E2_2447 -2.0 -5.1 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4918 -2.0 -2.0 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_4829 -2.0 -4.3 OsmC/Ohr family protein compare
Pf6N2E2_4617 -2.0 -12.1 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_2899 -1.9 -3.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5841 -1.9 -1.1 GlcG protein compare
Pf6N2E2_5155 -1.9 -3.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3791 -1.9 -7.8 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_4615 -1.9 -1.5 type IV pili signal transduction protein PilI compare
Pf6N2E2_5006 -1.9 -4.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2835 -1.9 -2.1 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_2074 -1.9 -1.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_693 -1.9 -2.1 hypothetical protein compare
Pf6N2E2_3321 -1.9 -5.3 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_4618 -1.9 -3.7 Chemotaxis signal transduction protein compare
Pf6N2E2_4057 -1.9 -1.1 lipoprotein, putative compare
Pf6N2E2_5520 -1.9 -4.6 Sensory box histidine kinase compare
Pf6N2E2_4635 -1.9 -5.0 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_4381 -1.9 -3.2 hypothetical protein compare
Pf6N2E2_6047 -1.9 -1.8 hypothetical protein compare
Pf6N2E2_1032 -1.9 -1.3 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_5300 -1.9 -9.3 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1626 -1.8 -5.7 Putative ATP-binding component of a transport system compare
Pf6N2E2_1625 -1.8 -2.1 Ferric reductase (1.6.99.14) compare
Pf6N2E2_1696 -1.8 -2.7 Alkanesulfonates-binding protein compare
Pf6N2E2_5571 -1.8 -1.4 hypothetical protein compare
Pf6N2E2_3351 -1.8 -2.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2852 -1.8 -7.6 GGDEF domain/EAL domain protein compare
Pf6N2E2_1040 -1.8 -1.8 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4205 -1.8 -3.5 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4422 -1.8 -3.1 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_2732 -1.8 -4.0 Transcriptional regulator, LysR family compare
Pf6N2E2_2129 -1.8 -3.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5668 -1.8 -3.6 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_2700 -1.7 -6.1 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_562 -1.7 -4.1 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_4092 -1.7 -2.1 FIG00954395: hypothetical protein compare
Pf6N2E2_4153 -1.7 -3.8 Sensory box histidine kinase compare
Pf6N2E2_1636 -1.7 -4.5 Ferrichrome-iron receptor compare
Pf6N2E2_2258 -1.7 -5.7 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5806 -1.7 -2.1 hypothetical protein compare
Pf6N2E2_4399 -1.7 -4.8 GGDEF domain/EAL domain protein compare
Pf6N2E2_3270 -1.7 -3.4 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_3325 -1.7 -1.6 ABC transporter, ATP-binding protein compare
Pf6N2E2_4077 -1.7 -2.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3919 -1.6 -6.6 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf6N2E2_5671 -1.6 -2.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_2885 -1.6 -4.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_622 -1.6 -2.4 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_2201 -1.6 -3.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_2292 -1.6 -2.0 Universal stress protein family COG0589 compare
Pf6N2E2_6063 -1.6 -4.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_445 -1.6 -5.0 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_942 -1.6 -1.4 Mll6465 protein compare
Pf6N2E2_2061 -1.6 -2.6 CobW GTPase involved in cobalt insertion for B12 biosynthesis compare
Pf6N2E2_5613 -1.5 -2.4 FIG00953674: hypothetical protein compare
Pf6N2E2_5711 -1.5 -4.4 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_6064 -1.5 -3.6 2-methylaconitate isomerase compare
Pf6N2E2_5705 -1.5 -2.6 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4614 -1.5 -2.3 twitching motility protein PilH compare
Pf6N2E2_280 -1.5 -2.9 hypothetical protein compare
Pf6N2E2_5768 -1.5 -2.6 DNA recombination-dependent growth factor C compare
Pf6N2E2_4908 -1.5 -5.1 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5316 -1.5 -2.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5181 -1.5 -5.6 Paraquat-inducible protein A compare
Pf6N2E2_3060 -1.5 -2.4 Outer membrane protein H precursor compare
Pf6N2E2_4494 -1.5 -2.8 Adenylate cyclase (EC 4.6.1.1) compare
Pf6N2E2_1477 -1.5 -3.3 hypothetical protein compare
Pf6N2E2_2064 -1.5 -1.9 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3792 -1.5 -4.2 Glucans biosynthesis protein G precursor compare
Pf6N2E2_1834 -1.5 -1.4 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4383 -1.5 -7.1 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
Pf6N2E2_2630 -1.5 -4.1 Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) compare
Pf6N2E2_96 -1.5 -2.9 FIG011065: hypothetical protein compare
Pf6N2E2_3829 -1.5 -2.5 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_3611 -1.4 -1.6 HflC protein compare
Pf6N2E2_5430 -1.4 -3.1 Transglycosylase, Slt family compare
Pf6N2E2_4624 -1.4 -0.9 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3655 -1.4 -12.0 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_756 -1.4 -3.8 hypothetical protein compare
Pf6N2E2_1705 -1.4 -1.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1694 -1.4 -1.0 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_160 -1.4 -1.8 hypothetical protein compare
Pf6N2E2_762 -1.4 -4.4 FIG00960186: hypothetical protein compare
Pf6N2E2_529 -1.4 -3.7 FIG00954439: hypothetical protein compare
Pf6N2E2_1340 -1.4 -1.6 major pilin protein fimA compare
Pf6N2E2_5986 -1.4 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3920 -1.4 -7.5 Cystine ABC transporter, permease protein compare
Pf6N2E2_1660 -1.4 -2.0 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_3015 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_5462 -1.4 -2.8 Signal transduction histidine kinase compare
Pf6N2E2_3908 -1.4 -1.8 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_817 -1.4 -4.4 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_170 -1.4 -1.9 lipoprotein, putative compare
Pf6N2E2_5956 -1.3 -3.7 FIG004453: protein YceG like compare
Pf6N2E2_1635 -1.3 -3.1 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_5261 -1.3 -0.5 FIG00956983: hypothetical protein compare
Pf6N2E2_5178 -1.3 -3.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_961 -1.3 -2.2 FIG00954712: hypothetical protein compare
Pf6N2E2_3062 -1.3 -1.5 Membrane-associated zinc metalloprotease compare
Pf6N2E2_407 -1.3 -3.4 Phosphohydrolase (MutT/nudix family protein) compare
Pf6N2E2_2261 -1.3 -2.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_1740 -1.3 -2.7 Transketolase, C-terminal section (EC 2.2.1.1) compare
Pf6N2E2_3666 -1.3 -1.2 InaA protein compare
Pf6N2E2_4388 -1.3 -6.6 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_3870 -1.3 -1.7 hypothetical protein compare
Pf6N2E2_1776 -1.3 -1.5 Chemotaxis protein CheD compare
Pf6N2E2_3081 -1.3 -4.4 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_1123 -1.3 -2.6 Tol biopolymer transport system, TolR protein compare
Pf6N2E2_2810 -1.3 -3.0 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_4994 -1.3 -3.4 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Pf6N2E2_1371 -1.3 -2.2 hypothetical protein compare
Pf6N2E2_3085 -1.2 -1.2 FIG00954614: hypothetical protein compare
Pf6N2E2_3841 -1.2 -2.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_5976 -1.2 -3.0 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf6N2E2_5331 -1.2 -3.0 ATPase, AFG1 family compare
Pf6N2E2_5476 -1.2 -2.2 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_1661 -1.2 -4.7 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_75 -1.2 -2.4 Colicin V production protein compare
Pf6N2E2_5987 -1.2 -3.6 OmpA family protein compare
Pf6N2E2_1804 -1.2 -2.4 Immune-responsive protein 1 compare
Pf6N2E2_4982 -1.2 -2.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_3830 -1.2 -2.5 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_4684 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_5317 -1.2 -7.5 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_4372 -1.2 -2.3 FIG00460773: hypothetical protein compare
Pf6N2E2_4136 -1.2 -4.4 Aromatic ring-cleaving dioxygenase compare
Pf6N2E2_1508 -1.2 -2.4 DNA-binding response regulator compare
Pf6N2E2_5328 -1.2 -3.4 FIG00958649: hypothetical protein compare
Pf6N2E2_5241 -1.2 -1.2 Aminopeptidase N compare
Pf6N2E2_882 -1.2 -1.9 FIG00961517: hypothetical protein compare
Pf6N2E2_3656 -1.2 -7.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_2938 -1.2 -2.3 Outer membrane lipoprotein compare
Pf6N2E2_3969 -1.2 -0.9 Membrane-fusion protein compare
Pf6N2E2_1634 -1.2 -2.9 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_1445 -1.2 -1.5 Glutathione S-transferase compare
Pf6N2E2_5676 -1.2 -2.6 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_3252 -1.2 -4.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_482 -1.2 -2.1 Transcriptional regulator BkdR of isoleucine and valine catabolism operon compare
Pf6N2E2_5183 -1.2 -5.9 Paraquat-inducible protein B compare
Pf6N2E2_6071 -1.2 -2.3 FIG139991: Putative thiamine pyrophosphate-requiring enzyme compare
Pf6N2E2_2282 -1.2 -1.3 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_442 -1.2 -2.7 FIG00962345: hypothetical protein compare
Pf6N2E2_620 -1.2 -2.4 BatD compare
Pf6N2E2_4594 -1.2 -1.9 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_1385 -1.2 -1.8 FIG00956261: hypothetical protein compare
Pf6N2E2_3027 -1.2 -0.8 Baseplate assembly protein V compare
Pf6N2E2_69 -1.2 -4.8 Probable type IV pilus assembly FimV-related transmembrane protein compare
Pf6N2E2_2388 -1.2 -2.0 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_2857 -1.2 -1.3 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_4988 -1.2 -2.4 Antiholin-like protein LrgA compare
Pf6N2E2_962 -1.2 -1.6 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Pf6N2E2_3255 -1.2 -2.2 YrbA protein compare
Pf6N2E2_4113 -1.2 -1.4 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_855 -1.1 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_40 -1.1 -2.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare


Specific Phenotypes

For 48 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Cobalt chloride hexahydrate across organisms