Experiment set13IT072 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cobalt chloride hexahydrate 0.4 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_5705 -3.4 -4.9 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2129 -3.0 -4.5 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4797 -2.6 -1.7 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_3661 -2.5 -6.7 hypothetical protein compare
Pf6N2E2_2675 -2.4 -1.3 ATP-dependent RNA helicase SrmB compare
Pf6N2E2_3607 -2.4 -8.4 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5679 -2.3 -4.6 hypothetical protein compare
Pf6N2E2_5111 -2.3 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_1743 -2.3 -2.2 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_2984 -2.3 -2.6 LysR family transcriptional regulator PA3398 compare
Pf6N2E2_4987 -2.2 -1.1 MaoC-like domain protein compare
Pf6N2E2_4071 -2.0 -3.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_4773 -1.9 -1.4 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1617 -1.9 -1.7 COG2199: FOG: GGDEF domain compare
Pf6N2E2_4612 -1.9 -4.4 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3667 -1.9 -2.1 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2794 -1.9 -1.9 putative membrane protein compare
Pf6N2E2_3658 -1.9 -7.7 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_5534 -1.8 -1.8 FIG000859: hypothetical protein YebC compare
Pf6N2E2_6164 -1.8 -1.6 tRNA-Val-TAC compare
Pf6N2E2_5320 -1.8 -7.3 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_563 -1.8 -7.7 Serine transporter conserved
Pf6N2E2_3461 -1.8 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_3847 -1.7 -2.6 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5739 -1.7 -1.6 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_3908 -1.7 -3.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5319 -1.7 -6.9 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_1824 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_4092 -1.6 -2.3 FIG00954395: hypothetical protein compare
Pf6N2E2_5150 -1.5 -4.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5331 -1.5 -3.9 ATPase, AFG1 family compare
Pf6N2E2_2277 -1.5 -1.7 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5321 -1.5 -7.2 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_1567 -1.5 -2.9 FIG00964846: hypothetical protein compare
Pf6N2E2_737 -1.5 -1.6 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_3829 -1.5 -3.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_5317 -1.5 -9.9 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_4974 -1.5 -6.6 DedA protein compare
Pf6N2E2_4418 -1.5 -0.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_5318 -1.5 -11.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_5677 -1.5 -1.8 Carbon storage regulator compare
Pf6N2E2_1660 -1.4 -2.3 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_4077 -1.4 -3.3 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3015 -1.4 -3.4 hypothetical protein compare
Pf6N2E2_446 -1.4 -4.6 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_882 -1.4 -2.4 FIG00961517: hypothetical protein compare
Pf6N2E2_3666 -1.4 -1.5 InaA protein compare
Pf6N2E2_2447 -1.4 -4.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_5086 -1.4 -1.6 hypothetical protein compare
Pf6N2E2_4153 -1.4 -3.7 Sensory box histidine kinase compare
Pf6N2E2_4360 -1.3 -6.6 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_659 -1.3 -1.8 Transcriptional regulatory protein ompR compare
Pf6N2E2_4762 -1.3 -1.8 Biotin synthesis protein BioH compare
Pf6N2E2_1014 -1.3 -1.8 Nitrate/nitrite transporter compare
Pf6N2E2_4369 -1.3 -0.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5394 -1.3 -2.5 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_3321 -1.3 -4.0 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_40 -1.3 -3.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4113 -1.3 -2.6 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_3323 -1.3 -2.9 hypothetical protein compare
Pf6N2E2_1477 -1.3 -3.3 hypothetical protein compare
Pf6N2E2_603 -1.3 -3.2 FIG00953934: hypothetical protein compare
Pf6N2E2_5843 -1.2 -1.9 hypothetical protein compare
Pf6N2E2_3659 -1.2 -3.7 Protein fixF compare
Pf6N2E2_4545 -1.2 -2.0 hypothetical protein compare
Pf6N2E2_919 -1.2 -1.3 FIG00954373: hypothetical protein compare
Pf6N2E2_4993 -1.2 -2.3 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_2732 -1.2 -3.9 Transcriptional regulator, LysR family compare
Pf6N2E2_1625 -1.2 -2.1 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3264 -1.2 -5.3 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_942 -1.2 -1.4 Mll6465 protein compare
Pf6N2E2_5536 -1.2 -1.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_945 -1.2 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_1305 -1.2 -2.0 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_698 -1.2 -1.4 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_1804 -1.2 -3.2 Immune-responsive protein 1 compare
Pf6N2E2_2258 -1.2 -5.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_955 -1.2 -2.6 FIG00953508: hypothetical protein compare
Pf6N2E2_1636 -1.2 -4.2 Ferrichrome-iron receptor compare
Pf6N2E2_4453 -1.1 -7.8 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_1635 -1.1 -2.8 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_1534 -1.1 -1.4 Probable transmembrane protein compare
Pf6N2E2_5520 -1.1 -4.0 Sensory box histidine kinase compare
Pf6N2E2_3055 -1.1 -2.3 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_2274 -1.1 -1.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_339 -1.1 -2.0 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_1034 -1.1 -1.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2064 -1.1 -1.7 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_555 -1.1 -2.6 Uncharacterized protein ImpB compare
Pf6N2E2_241 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_2887 -1.1 -2.4 Aldose 1-epimerase compare
Pf6N2E2_1011 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_2798 -1.1 -2.8 Death on curing protein, Doc toxin compare
Pf6N2E2_5746 -1.1 -1.3 Cobalamin synthase compare
Pf6N2E2_4120 -1.1 -7.0 Trk system potassium uptake protein TrkA compare
Pf6N2E2_5768 -1.0 -2.3 DNA recombination-dependent growth factor C compare
Pf6N2E2_855 -1.0 -1.8 Transcriptional regulator, IclR family compare
Pf6N2E2_1835 -1.0 -3.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1705 -1.0 -1.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_238 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_2827 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_3283 -1.0 -4.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5567 -1.0 -2.2 Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4) compare
Pf6N2E2_2870 -1.0 -1.6 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_5346 -1.0 -1.5 rRNA small subunit methyltransferase I compare
Pf6N2E2_1652 -1.0 -1.2 Transcriptional regulator, TetR family compare
Pf6N2E2_971 -1.0 -1.8 hypothetical protein compare
Pf6N2E2_3534 -1.0 -0.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_5646 -1.0 -1.2 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5155 -1.0 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_28 -1.0 -1.6 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2282 -1.0 -1.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4732 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_1634 -1.0 -2.7 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_1912 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_5328 -0.9 -2.8 FIG00958649: hypothetical protein compare
Pf6N2E2_2640 -0.9 -1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5574 -0.9 -2.2 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_4399 -0.9 -3.4 GGDEF domain/EAL domain protein compare
Pf6N2E2_902 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_2681 -0.9 -1.3 3-phosphoglycerate kinase compare
Pf6N2E2_1497 -0.9 -2.2 D-2-hydroxyglutarate dehydrogenase compare
Pf6N2E2_1667 -0.9 -1.7 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3544 -0.9 -3.1 ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component compare
Pf6N2E2_5840 -0.9 -2.8 hypothetical protein compare
Pf6N2E2_1512 -0.9 -2.2 Thiamin biosynthesis lipoprotein ApbE compare
Pf6N2E2_1173 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_4614 -0.9 -2.1 twitching motility protein PilH compare
Pf6N2E2_2121 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_3325 -0.9 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_2795 -0.9 -1.1 putative exported protein compare
Pf6N2E2_728 -0.9 -1.6 Nitrate/nitrite transporter compare
Pf6N2E2_4276 -0.9 -2.6 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1974 -0.9 -2.6 FIG141694: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_4091 -0.9 -5.7 Oligopeptidase A (EC 3.4.24.70) compare
Pf6N2E2_2106 -0.9 -1.3 hypothetical protein compare
Pf6N2E2_2518 -0.9 -1.6 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_4413 -0.9 -5.3 FIG004064: hypothetical protein compare
Pf6N2E2_4635 -0.8 -3.7 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_4963 -0.8 -1.2 Homoserine dehydrogenase (EC 1.1.1.3) compare
Pf6N2E2_3004 -0.8 -1.5 Prophage baseplate assembly protein V compare
Pf6N2E2_4477 -0.8 -1.7 Z-ring-associated protein ZapA compare
Pf6N2E2_3763 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_2007 -0.8 -2.6 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_1806 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_2465 -0.8 -3.4 Cys regulon transcriptional activator CysB compare
Pf6N2E2_138 -0.8 -2.1 Alpha/beta hydrolase fold (EC 3.8.1.5) compare
Pf6N2E2_5820 -0.8 -2.0 FIG00957914: hypothetical protein compare
Pf6N2E2_5835 -0.8 -2.1 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_1633 -0.8 -2.2 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_1894 -0.8 -2.5 hypothetical protein compare
Pf6N2E2_4590 -0.8 -2.6 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_1424 -0.8 -1.6 transcriptional regulator, TetR family compare
Pf6N2E2_4615 -0.8 -1.2 type IV pili signal transduction protein PilI compare
Pf6N2E2_3839 -0.8 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3541 -0.8 -2.2 Putative multicopper oxidases compare
Pf6N2E2_2503 -0.8 -1.0 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_4982 -0.8 -1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_193 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_3033 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_2103 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_322 -0.8 -2.4 Transcriptional regulator, LacI family compare
Pf6N2E2_5846 -0.8 -6.3 Nucleoside ABC transporter, periplasmic nucleoside-binding protein compare
Pf6N2E2_1876 -0.8 -1.3 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) compare
Pf6N2E2_2367 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_1648 -0.8 -2.4 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_504 -0.8 -1.6 DNA-binding response regulator compare
Pf6N2E2_1885 -0.8 -1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_2247 -0.8 -1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_1792 -0.8 -1.8 Hydroxypyruvate isomerase (EC 5.3.1.22) compare
Pf6N2E2_595 -0.8 -1.0 Arsenical resistance operon repressor compare
Pf6N2E2_3498 -0.8 -1.4 FIG00953349: hypothetical protein compare
Pf6N2E2_4889 -0.8 -4.3 Putative transport protein compare
Pf6N2E2_443 -0.7 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3108 -0.7 -1.3 FIG00953405: hypothetical protein compare
Pf6N2E2_2727 -0.7 -2.7 Ribonuclease D (EC 3.1.26.3) compare
Pf6N2E2_1502 -0.7 -1.3 Two-component system regulatory protein compare
Pf6N2E2_3475 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_6075 -0.7 -2.0 Chromosome segregation ATPases compare
Pf6N2E2_4423 -0.7 -1.3 FIG00953342: hypothetical protein compare
Pf6N2E2_1273 -0.7 -2.2 Probable RND efflux membrane fusion protein compare
Pf6N2E2_2114 -0.7 -1.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3060 -0.7 -1.9 Outer membrane protein H precursor compare
Pf6N2E2_4534 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_5430 -0.7 -2.4 Transglycosylase, Slt family compare
Pf6N2E2_4679 -0.7 -3.4 Betaine aldehyde dehydrogenase (EC 1.2.1.8) compare
Pf6N2E2_1671 -0.7 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_3612 -0.7 -1.5 HflK protein compare
Pf6N2E2_827 -0.7 -1.1 probable dioxygenase compare
Pf6N2E2_5841 -0.7 -0.8 GlcG protein compare
Pf6N2E2_5386 -0.7 -2.8 Alginate biosynthesis protein Alg44 compare
Pf6N2E2_798 -0.7 -2.1 Ku domain protein compare
Pf6N2E2_2384 -0.7 -0.6 CmpX compare
Pf6N2E2_2281 -0.7 -1.1 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_331 -0.7 -1.6 Putative translation initiation inhibitor, yjgF family compare
Pf6N2E2_2778 -0.7 -1.7 Urea carboxylase-related aminomethyltransferase (EC 2.1.2.10) compare
Pf6N2E2_4684 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_1732 -0.7 -1.7 hypothetical protein compare
Pf6N2E2_1860 -0.7 -1.6 Ferredoxin, 2Fe-2S compare
Pf6N2E2_2323 -0.7 -1.0 Fumarate and nitrate reduction regulatory protein compare


Specific Phenotypes

For 8 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Cobalt chloride hexahydrate across organisms