Experiment set13IT071 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS01095 -5.8 -2.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS17975 -5.7 -3.4 tail-specific protease compare
BWI76_RS01110 -5.3 -5.0 TDP-fucosamine acetyltransferase compare
BWI76_RS16965 -5.2 -1.9 murein lipoprotein compare
BWI76_RS05120 -5.0 -8.3 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS09760 -4.7 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS26455 -4.7 -1.7 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS19840 -4.4 -1.1 hypothetical protein compare
BWI76_RS08525 -4.4 -1.9 colicin transporter compare
BWI76_RS26665 -4.3 -2.3 DNA-binding response regulator compare
BWI76_RS17980 -4.2 -5.6 RNA chaperone ProQ compare
BWI76_RS08520 -4.1 -1.8 colicin transporter TolQ compare
BWI76_RS26670 -4.0 -7.6 two-component sensor histidine kinase compare
BWI76_RS11155 -3.9 -1.9 penicillin-binding protein activator LpoB compare
BWI76_RS08535 -3.8 -1.7 translocation protein TolB compare
BWI76_RS01630 -3.8 -1.0 16S ribosomal RNA compare
BWI76_RS01080 -3.8 -8.9 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS09645 -3.7 -0.9 thioredoxin-disulfide reductase compare
BWI76_RS01115 -3.7 -2.6 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS01135 -3.7 -6.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS21070 -3.7 -1.6 outer membrane protein assembly factor BamB compare
BWI76_RS25335 -3.4 -1.4 stringent starvation protein A compare
BWI76_RS21345 -3.4 -2.5 sigma-E factor regulatory protein RseB compare
BWI76_RS23265 -3.4 -2.1 hypothetical protein compare
BWI76_RS08530 -3.4 -1.2 protein TolA compare
BWI76_RS21350 -3.3 -2.6 anti-RNA polymerase sigma factor SigE compare
BWI76_RS13755 -3.3 -1.2 hypothetical protein compare
BWI76_RS20380 -3.3 -0.8 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS19905 -3.2 -4.3 OmpK36 porin compare
BWI76_RS19770 -3.1 -1.1 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS06535 -3.1 -2.1 endopeptidase La compare
BWI76_RS26460 -3.1 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS05015 -3.0 -2.0 transcriptional regulator compare
BWI76_RS04645 -3.0 -3.9 3-dehydroquinase compare
BWI76_RS21690 -2.9 -1.7 hypothetical protein compare
BWI76_RS15825 -2.8 -1.0 hypothetical protein compare
BWI76_RS01350 -2.8 -0.7 NAD(P)H-flavin reductase compare
BWI76_RS01090 -2.8 -2.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS26730 -2.8 -5.9 inner membrane protein YhjD compare
BWI76_RS23360 -2.7 -1.3 diaminopimelate decarboxylase compare
BWI76_RS11300 -2.7 -0.9 cupin compare
BWI76_RS01125 -2.7 -4.4 4-alpha-L-fucosyltransferase compare
BWI76_RS25070 -2.6 -1.1 hypothetical protein compare
BWI76_RS00875 -2.6 -4.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS26390 -2.6 -8.7 cell division protein FtsX compare
BWI76_RS02780 -2.6 -11.8 translocation and assembly module TamB compare
BWI76_RS08020 -2.5 -6.3 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS15975 -2.5 -1.1 hypothetical protein compare
BWI76_RS09625 -2.5 -1.1 hypothetical protein compare
BWI76_RS25060 -2.5 -4.7 lipoprotein NlpI compare
BWI76_RS08210 -2.5 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS07465 -2.5 -0.8 TetR family transcriptional regulator compare
BWI76_RS08040 -2.4 -2.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS01210 -2.4 -1.0 tyrosine recombinase XerC compare
BWI76_RS16425 -2.4 -2.6 hypothetical protein compare
BWI76_RS26470 -2.4 -4.4 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS00965 -2.3 -0.8 acetolactate synthase 2 small subunit compare
BWI76_RS22755 -2.3 -4.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS27425 -2.3 -1.4 DNA-directed RNA polymerase subunit omega compare
BWI76_RS09970 -2.3 -1.0 porin OmpA compare
BWI76_RS21450 -2.3 -1.4 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS02775 -2.3 -4.0 outer membrane protein assembly factor compare
BWI76_RS23830 -2.3 -5.9 hypothetical protein compare
BWI76_RS25600 -2.3 -0.8 tRNA-Thr compare
BWI76_RS04715 -2.3 -2.0 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS24900 -2.3 -1.1 DeoR family transcriptional regulator compare
BWI76_RS12270 -2.2 -3.6 hypothetical protein compare
BWI76_RS05260 -2.2 -0.9 chaperone compare
BWI76_RS13160 -2.2 -1.4 azoreductase compare
BWI76_RS00355 -2.2 -1.6 DNA polymerase I compare
BWI76_RS22130 -2.2 -3.0 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS27440 -2.1 -1.4 DNA helicase RecG compare
BWI76_RS17720 -2.1 -0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS16490 -2.1 -1.3 glutaredoxin compare
BWI76_RS24885 -2.1 -0.9 PTS galactitol transporter subunit IIB compare
BWI76_RS23885 -2.1 -0.7 2-octaprenylphenol hydroxylase compare
BWI76_RS24605 -2.1 -5.1 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS21370 -2.0 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS08385 -2.0 -3.0 citrate (Si)-synthase compare
BWI76_RS04305 -1.9 -1.1 molecular chaperone DnaJ compare
BWI76_RS01170 -1.9 -1.8 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS20355 -1.9 -2.0 colicin V production protein compare
BWI76_RS13595 -1.9 -3.5 transcriptional regulator compare
BWI76_RS14065 -1.9 -1.6 hypothetical protein compare
BWI76_RS00240 -1.9 -0.9 FMN-binding protein MioC compare
BWI76_RS02550 -1.9 -3.3 protease modulator HflC compare
BWI76_RS11980 -1.9 -1.1 DeoR family transcriptional regulator compare
BWI76_RS24580 -1.9 -3.6 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS16375 -1.9 -1.7 electron transport complex subunit G compare
BWI76_RS01325 -1.9 -2.6 twin-arginine translocase subunit TatB compare
BWI76_RS15110 -1.9 -6.0 putative excinuclease ABC subunit A compare
BWI76_RS21075 -1.9 -1.2 membrane protein compare
BWI76_RS19375 -1.9 -1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS22645 -1.8 -4.1 RNA polymerase sigma factor RpoS compare
BWI76_RS01105 -1.8 -3.4 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS19920 -1.8 -7.8 hybrid sensor histidine kinase/response regulator compare
BWI76_RS16895 -1.8 -1.3 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS24765 -1.8 -3.1 membrane protein compare
BWI76_RS00720 -1.8 -1.7 DNA-binding response regulator compare
BWI76_RS01885 -1.8 -1.3 CsbD family protein compare
BWI76_RS01220 -1.8 -3.2 DNA-dependent helicase II compare
BWI76_RS19910 -1.8 -9.3 phosphotransferase RcsD compare
BWI76_RS13920 -1.8 -6.7 magnesium-translocating P-type ATPase compare
BWI76_RS05350 -1.8 -9.7 Rcs stress response system protein RcsF compare
BWI76_RS12090 -1.8 -2.3 HNH endonuclease compare
BWI76_RS03080 -1.7 -3.8 (Fe-S)-cluster assembly protein compare
BWI76_RS05450 -1.7 -0.8 ribonuclease HI compare
BWI76_RS26440 -1.7 -0.7 hypothetical protein compare
BWI76_RS13560 -1.7 -0.7 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS20360 -1.7 -0.6 cell division protein DedD compare
BWI76_RS07185 -1.6 -0.9 hypothetical protein compare
BWI76_RS11275 -1.6 -4.1 sensor protein PhoQ compare
BWI76_RS15115 -1.6 -1.1 MFS transporter compare
BWI76_RS05835 -1.6 -1.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS13915 -1.6 -4.9 magnesium transport protein MgtC compare
BWI76_RS16200 -1.6 -1.4 NAD(P) transhydrogenase subunit beta compare
BWI76_RS19035 -1.6 -6.2 dTDP-rhamnosyl transferase compare
BWI76_RS02530 -1.6 -0.8 tRNA dimethylallyltransferase compare
BWI76_RS06525 -1.6 -2.0 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS19700 -1.5 -1.7 deoxyribonuclease IV compare
BWI76_RS27940 -1.5 -2.2 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS17860 -1.5 -1.1 YoaH family protein compare
BWI76_RS26570 -1.5 -1.6 anion permease compare
BWI76_RS10930 -1.5 -4.8 glucan biosynthesis protein G compare
BWI76_RS06680 -1.5 -1.0 hypothetical protein compare
BWI76_RS25280 -1.5 -0.9 RNase adaptor protein RapZ compare
BWI76_RS21580 -1.5 -0.6 SsrA-binding protein compare
BWI76_RS24400 -1.5 -3.0 outer membrane channel protein TolC compare
BWI76_RS16355 -1.5 -2.0 electron transport complex subunit A compare
BWI76_RS24340 -1.5 -3.7 two-component sensor histidine kinase compare
BWI76_RS26095 -1.5 -0.5 shikimate kinase compare
BWI76_RS27165 -1.4 -3.2 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS25700 -1.4 -3.0 heavy metal-responsive transcriptional regulator compare
BWI76_RS06635 -1.4 -1.3 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS26200 -1.4 -3.4 starch synthase compare
BWI76_RS08975 -1.4 -2.8 amino acid ABC transporter substrate-binding protein compare
BWI76_RS24075 -1.4 -2.6 glutathione synthase compare
BWI76_RS23825 -1.4 -4.8 hypothetical protein compare
BWI76_RS26395 -1.4 -4.1 cell division protein FtsE compare
BWI76_RS26425 -1.4 -4.4 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS02610 -1.4 -2.6 transcriptional regulator compare
BWI76_RS10935 -1.4 -2.7 glucan biosynthesis glucosyltransferase H compare
BWI76_RS23920 -1.4 -1.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS01870 -1.4 -2.3 diacylglycerol kinase compare
BWI76_RS24385 -1.3 -3.2 phosphodiesterase compare
BWI76_RS12340 -1.3 -2.7 molecular chaperone Tir compare
BWI76_RS20720 -1.3 -1.0 hypothetical protein compare
BWI76_RS26075 -1.3 -0.8 DNA adenine methylase compare
BWI76_RS03225 -1.3 -4.1 transcriptional regulator compare
BWI76_RS15740 -1.3 -2.1 HNH endonuclease compare
BWI76_RS12205 -1.3 -1.8 hypothetical protein compare
BWI76_RS12405 -1.3 -4.5 diguanylate phosphodiesterase compare
BWI76_RS10920 -1.3 -2.5 putative TetR family transcriptional regulator compare
BWI76_RS12275 -1.3 -5.8 hypothetical protein compare
BWI76_RS24610 -1.3 -2.3 dihydroxyacetone kinase compare
BWI76_RS05680 -1.3 -3.4 LacI family transcriptional regulator compare
BWI76_RS26080 -1.3 -2.4 cell division protein DamX compare
BWI76_RS23490 -1.3 -3.5 fimbrial protein compare
BWI76_RS08395 -1.3 -1.1 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS09190 -1.3 -1.8 hypothetical protein compare
BWI76_RS25065 -1.3 -2.2 polyribonucleotide nucleotidyltransferase compare
BWI76_RS11580 -1.3 -1.4 L-asparaginase 1 compare
BWI76_RS11255 -1.3 -1.0 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS21680 -1.3 -2.7 antitoxin of the YeeV-YeeU toxin-antitoxin system compare
BWI76_RS06520 -1.3 -2.2 trigger factor compare
BWI76_RS01800 -1.3 -1.8 glucose-6-phosphate isomerase compare
BWI76_RS06490 -1.3 -4.1 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS19040 -1.3 -5.3 hypothetical protein compare
BWI76_RS15705 -1.3 -3.7 putative holin protein compare
BWI76_RS22950 -1.3 -1.7 membrane protein compare
BWI76_RS11635 -1.3 -1.1 ABC transporter compare
BWI76_RS22805 -1.2 -4.5 GTP diphosphokinase compare
BWI76_RS21140 -1.2 -0.7 molecular chaperone HscA compare
BWI76_RS09825 -1.2 -1.7 envelope biogenesis factor ElyC compare
BWI76_RS12320 -1.2 -4.6 hypothetical protein compare
BWI76_RS25300 -1.2 -1.8 hybrid sensor histidine kinase/response regulator compare
BWI76_RS00430 -1.2 -2.3 GNAT family N-acetyltransferase compare
BWI76_RS00180 -1.2 -0.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS27225 -1.2 -1.3 rhodanese-like domain-containing protein compare
BWI76_RS15600 -1.2 -2.0 hypothetical protein compare
BWI76_RS09755 -1.2 -2.5 phosphoserine transaminase compare
BWI76_RS14755 -1.2 -1.4 SIS domain-containing protein compare
BWI76_RS10990 -1.2 -1.8 dihydroorotase compare
BWI76_RS27780 -1.2 -1.4 hypothetical protein compare
BWI76_RS16250 -1.2 -2.5 DNA-binding response regulator compare
BWI76_RS10950 -1.2 -1.5 MFS transporter compare
BWI76_RS08380 -1.2 -1.0 endonuclease VIII compare
BWI76_RS18905 -1.2 -2.0 putrescine/spermidine ABC transporter compare
BWI76_RS14770 -1.2 -0.5 PTS IIA 2 domain protein compare
BWI76_RS20750 -1.2 -0.5 carboxysome structural protein EutK compare
BWI76_RS03595 -1.2 -1.1 ethanolamine utilization protein EutM compare
BWI76_RS24850 -1.2 -3.2 DeoR family transcriptional regulator compare
BWI76_RS21215 -1.2 -2.4 NAGC-like transcriptional regulator compare
BWI76_RS18360 -1.1 -1.3 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS01185 -1.1 -0.7 adenylate cyclase compare
BWI76_RS24120 -1.1 -4.0 YggW family oxidoreductase compare
BWI76_RS26765 -1.1 -4.2 phosphodiesterase compare
BWI76_RS12265 -1.1 -3.7 hypothetical protein compare
BWI76_RS22765 -1.1 -4.0 sulfite reductase subunit alpha compare
BWI76_RS10625 -1.1 -4.8 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL across organisms