Experiment set13IT070 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 1.5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_43 -3.8 -2.6 Histidine permease YuiF compare
Pf6N2E2_2674 -3.7 -2.1 FIG00953856: hypothetical protein compare
Pf6N2E2_4071 -3.5 -4.1 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_760 -3.2 -11.1 Na+/H+ antiporter NhaB compare
Pf6N2E2_2012 -3.1 -2.9 hypothetical protein compare
Pf6N2E2_5679 -2.9 -3.9 hypothetical protein compare
Pf6N2E2_5794 -2.8 -2.6 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3696 -2.8 -1.5 hypothetical protein compare
Pf6N2E2_2129 -2.3 -4.0 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2064 -2.2 -2.8 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_42 -2.1 -3.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4999 -2.0 -4.6 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_4372 -2.0 -2.3 FIG00460773: hypothetical protein compare
Pf6N2E2_4773 -1.9 -1.5 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_1040 -1.9 -2.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_1305 -1.8 -2.5 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_622 -1.7 -2.8 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_3461 -1.7 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5758 -1.6 -2.0 FIG00957314: hypothetical protein compare
Pf6N2E2_1043 -1.6 -3.5 Transcriptional regulator, IclR family compare
Pf6N2E2_2013 -1.5 -0.8 hypothetical protein compare
Pf6N2E2_367 -1.5 -3.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_1660 -1.5 -2.3 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_2646 -1.5 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_2264 -1.5 -2.3 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_4418 -1.5 -0.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_282 -1.5 -1.3 GNAT family acetyltransferase YjcF compare
Pf6N2E2_3529 -1.4 -2.1 Toxin A compare
Pf6N2E2_3908 -1.4 -3.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_4155 -1.4 -6.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2211 -1.4 -5.6 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_2938 -1.4 -2.9 Outer membrane lipoprotein compare
Pf6N2E2_5936 -1.4 -1.5 Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48) compare
Pf6N2E2_2967 -1.4 -2.2 Cold shock protein CspA compare
Pf6N2E2_3607 -1.4 -6.0 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_5677 -1.4 -1.8 Carbon storage regulator compare
Pf6N2E2_2510 -1.3 -2.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_3027 -1.3 -1.2 Baseplate assembly protein V compare
Pf6N2E2_3024 -1.3 -2.5 Phage tail fibers compare
Pf6N2E2_2795 -1.3 -2.0 putative exported protein compare
Pf6N2E2_5678 -1.3 -4.2 hypothetical protein compare
Pf6N2E2_2010 -1.3 -1.4 hypothetical protein compare
Pf6N2E2_624 -1.3 -2.6 hypothetical protein PA3071 compare
Pf6N2E2_4797 -1.3 -1.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1625 -1.3 -2.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2340 -1.3 -2.4 Transcriptional regulator, GntR family compare
Pf6N2E2_4413 -1.2 -5.0 FIG004064: hypothetical protein compare
Pf6N2E2_3095 -1.2 -1.1 hypothetical protein compare
Pf6N2E2_5245 -1.2 -3.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1199 -1.2 -2.4 hypothetical protein compare
Pf6N2E2_5342 -1.2 -1.7 21 kDa hemolysin precursor compare
Pf6N2E2_779 -1.2 -2.9 transporter, putative compare
Pf6N2E2_4077 -1.2 -2.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_5006 -1.2 -3.8 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_733 -1.2 -2.5 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Pf6N2E2_5704 -1.2 -1.8 Transcriptional regulatory protein PhoP compare
Pf6N2E2_621 -1.1 -3.0 TPR domain protein in aerotolerance operon compare
Pf6N2E2_3237 -1.1 -2.3 hypothetical protein compare
Pf6N2E2_1081 -1.1 -1.8 probable membrane protein YPO3302 compare
Pf6N2E2_5536 -1.1 -1.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4059 -1.1 -1.2 DNA-binding protein HU-alpha compare
Pf6N2E2_3003 -1.1 -1.7 Bacteriophage protein GP46 compare
Pf6N2E2_5623 -1.1 -2.3 YciL protein compare
Pf6N2E2_3039 -1.1 -4.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5430 -1.1 -3.0 Transglycosylase, Slt family compare
Pf6N2E2_1648 -1.1 -3.0 Maltose/maltodextrin ABC transporter, permease protein MalG compare
Pf6N2E2_4636 -1.1 -4.5 periplasmic binding protein, putative compare
Pf6N2E2_5172 -1.1 -2.1 FOG: TPR repeat compare
Pf6N2E2_453 -1.1 -2.6 LysR family transcriptional regulator STM2281 compare
Pf6N2E2_4416 -1.1 -0.7 Tyrosine recombinase XerC compare
Pf6N2E2_2746 -1.1 -2.6 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_1886 -1.0 -1.1 hypothetical protein compare
Pf6N2E2_1014 -1.0 -1.2 Nitrate/nitrite transporter compare
Pf6N2E2_4612 -1.0 -2.7 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5703 -1.0 -2.4 outer membrane protein H1 compare
Pf6N2E2_2694 -1.0 -4.2 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_1983 -1.0 -2.3 hypothetical protein compare
Pf6N2E2_2496 -1.0 -1.7 FIG00956575: hypothetical protein compare
Pf6N2E2_2189 -1.0 -2.6 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2864 -1.0 -1.9 Gluconokinase (EC 2.7.1.12) compare
Pf6N2E2_1626 -1.0 -4.2 Putative ATP-binding component of a transport system compare
Pf6N2E2_3738 -1.0 -2.3 General secretion pathway protein L compare
Pf6N2E2_5711 -1.0 -3.8 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_882 -1.0 -1.8 FIG00961517: hypothetical protein compare
Pf6N2E2_5544 -0.9 -3.9 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_2835 -0.9 -1.1 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_659 -0.9 -1.4 Transcriptional regulatory protein ompR compare
Pf6N2E2_2536 -0.9 -1.0 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_1238 -0.9 -1.5 hypothetical protein compare
Pf6N2E2_3190 -0.9 -2.7 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_2062 -0.9 -0.9 FIG00955561: hypothetical protein compare
Pf6N2E2_955 -0.9 -1.9 FIG00953508: hypothetical protein compare
Pf6N2E2_3847 -0.9 -1.9 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_5733 -0.9 -3.5 NLP/P60 family protein compare
Pf6N2E2_5956 -0.9 -3.3 FIG004453: protein YceG like compare
Pf6N2E2_620 -0.9 -2.5 BatD compare
Pf6N2E2_1385 -0.9 -1.4 FIG00956261: hypothetical protein compare
Pf6N2E2_546 -0.9 -1.4 FIG00966904: hypothetical protein compare
Pf6N2E2_442 -0.9 -2.3 FIG00962345: hypothetical protein compare
Pf6N2E2_1865 -0.9 -3.1 Beta-carotene hydroxylase compare
Pf6N2E2_3247 -0.9 -3.4 Ribosomal RNA small subunit methyltransferase C (EC 2.1.1.52) compare
Pf6N2E2_4150 -0.9 -2.0 probable exported protein YPO0432 compare
Pf6N2E2_4974 -0.9 -4.4 DedA protein compare
Pf6N2E2_5520 -0.9 -3.3 Sensory box histidine kinase compare
Pf6N2E2_6047 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_3829 -0.9 -2.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_2017 -0.9 -1.6 DNA-binding protein compare
Pf6N2E2_2681 -0.9 -1.2 3-phosphoglycerate kinase compare
Pf6N2E2_5842 -0.9 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_1083 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_3782 -0.9 -3.2 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_3351 -0.9 -2.0 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5476 -0.9 -1.8 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_5087 -0.9 -2.9 Transcription elongation factor GreB-related protein compare
Pf6N2E2_4054 -0.9 -1.3 Osmotically inducible protein C compare
Pf6N2E2_746 -0.9 -0.9 FIG00958097: hypothetical protein compare
Pf6N2E2_3617 -0.8 -1.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4146 -0.8 -2.0 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_4763 -0.8 -3.5 Biotin synthesis protein BioC compare
Pf6N2E2_5278 -0.8 -3.1 Signal transduction histidine kinase compare
Pf6N2E2_4188 -0.8 -1.7 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_4638 -0.8 -1.3 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1671 -0.8 -2.1 Transcriptional regulator, TetR family compare
Pf6N2E2_1805 -0.8 -2.4 Multidrug resistance protein B compare
Pf6N2E2_3257 -0.8 -1.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4913 -0.8 -2.6 Predicted zinc-binding protein compare
Pf6N2E2_1972 -0.8 -1.1 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_254 -0.8 -2.1 Transcriptional regulator, LysR family compare
Pf6N2E2_855 -0.8 -1.5 Transcriptional regulator, IclR family compare
Pf6N2E2_700 -0.8 -2.0 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_3204 -0.8 -1.8 Rho-specific inhibitor of transcription termination (YaeO) compare
Pf6N2E2_1606 -0.8 -2.0 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_5927 -0.8 -2.8 ABC-type multidrug transport system, ATPase component compare
Pf6N2E2_2698 -0.8 -3.2 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_3282 -0.8 -0.7 FIG005080: Possible exported protein compare
Pf6N2E2_4584 -0.8 -1.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_1315 -0.8 -1.1 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2007 -0.8 -2.4 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_1705 -0.8 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2330 -0.8 -2.5 Transcriptional regulator, Cro/CI family compare
Pf6N2E2_4647 -0.8 -5.4 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_5574 -0.8 -1.9 Glycerol kinase (EC 2.7.1.30) compare
Pf6N2E2_2825 -0.8 -2.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_443 -0.8 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3885 -0.8 -0.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_5237 -0.8 -1.4 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2080 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_1394 -0.8 -2.3 FIG00953323: hypothetical protein compare
Pf6N2E2_1312 -0.8 -1.3 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_1804 -0.8 -2.3 Immune-responsive protein 1 compare
Pf6N2E2_6045 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_748 -0.8 -2.8 Plant-induced nitrilase (EC 3.5.5.1), hydrolyses beta-cyano-L-alanine compare
Pf6N2E2_2162 -0.8 -2.2 Cytochrome c4 compare
Pf6N2E2_4382 -0.8 -3.5 FIG00953403: hypothetical protein compare
Pf6N2E2_1275 -0.7 -3.1 Putative outer membrane lipoprotein compare
Pf6N2E2_2350 -0.7 -1.5 Oxygen-regulated invasion protein OrgB compare
Pf6N2E2_1189 -0.7 -2.1 Thioredoxin reductase (EC 1.8.1.9) compare
Pf6N2E2_2640 -0.7 -1.1 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_2518 -0.7 -1.5 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_1249 -0.7 -1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_2074 -0.7 -0.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_4908 -0.7 -3.2 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_1831 -0.7 -1.9 Citrate lyase beta chain (EC 4.1.3.6) compare
Pf6N2E2_1424 -0.7 -1.1 transcriptional regulator, TetR family compare
Pf6N2E2_2188 -0.7 -1.7 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf6N2E2_3349 -0.7 -0.7 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_5076 -0.7 -2.8 DNA repair protein RadA compare
Pf6N2E2_2251 -0.7 -1.9 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) conserved
Pf6N2E2_3574 -0.7 -4.8 Mannose-6-phosphate isomerase (EC 5.3.1.8) conserved
Pf6N2E2_28 -0.7 -1.6 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2402 -0.7 -0.6 hypothetical protein compare
Pf6N2E2_895 -0.7 -1.8 Transcriptional regulator, HxlR family compare
Pf6N2E2_4381 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_678 -0.7 -2.8 Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster compare
Pf6N2E2_1563 -0.7 -2.5 Transcriptional regulator, AraC family compare
Pf6N2E2_34 -0.7 -2.1 Cytosine deaminase (EC 3.5.4.1) compare
Pf6N2E2_553 -0.7 -1.9 Uncharacterized protein ImpD compare
Pf6N2E2_2367 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_1989 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_5088 -0.7 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_5816 -0.7 -0.8 Smr domain protein compare
Pf6N2E2_2476 -0.7 -2.4 Arylesterase precursor (EC 3.1.1.2) compare
Pf6N2E2_3969 -0.7 -0.8 Membrane-fusion protein compare
Pf6N2E2_3533 -0.7 -1.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_3665 -0.7 -0.9 serine/threonine protein kinase compare
Pf6N2E2_3255 -0.7 -1.5 YrbA protein compare
Pf6N2E2_2261 -0.7 -2.3 VacJ-like lipoprotein precursor compare
Pf6N2E2_5746 -0.7 -0.9 Cobalamin synthase compare
Pf6N2E2_3517 -0.7 -1.6 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_319 -0.7 -2.6 DUF1850 domain-containing protein compare
Pf6N2E2_4367 -0.7 -0.7 hypothetical protein compare
Pf6N2E2_2978 -0.7 -3.1 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase compare
Pf6N2E2_1034 -0.7 -0.8 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4120 -0.7 -4.7 Trk system potassium uptake protein TrkA compare
Pf6N2E2_1194 -0.7 -2.3 hypothetical protein compare
Pf6N2E2_4691 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_2794 -0.7 -1.0 putative membrane protein compare
Pf6N2E2_2300 -0.7 -1.6 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_3810 -0.7 -1.6 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1256 -0.7 -2.0 Transcriptional regulator, LysR family compare


Specific Phenotypes

For 11 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms