Experiment set13IT065 for Klebsiella michiganensis M5al

Compare to:

LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS26460 -5.7 -3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -4.8 -1.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS23265 -4.6 -1.8 hypothetical protein compare
BWI76_RS19840 -4.3 -1.2 hypothetical protein compare
BWI76_RS08525 -4.3 -2.0 colicin transporter compare
BWI76_RS05015 -4.2 -2.3 transcriptional regulator compare
BWI76_RS10745 -4.0 -1.1 hypothetical protein compare
BWI76_RS24740 -3.8 -3.2 GntR family transcriptional regulator compare
BWI76_RS08535 -3.7 -1.8 translocation protein TolB compare
BWI76_RS21070 -3.7 -1.7 outer membrane protein assembly factor BamB compare
BWI76_RS09645 -3.6 -1.0 thioredoxin-disulfide reductase compare
BWI76_RS25335 -3.5 -1.6 stringent starvation protein A compare
BWI76_RS08530 -3.3 -1.3 protein TolA compare
BWI76_RS20380 -3.2 -0.9 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS21450 -3.2 -1.7 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS06535 -3.1 -2.1 endopeptidase La compare
BWI76_RS16955 -3.1 -0.9 hypothetical protein compare
BWI76_RS15215 -3.1 -1.2 N-acetyltransferase compare
BWI76_RS26570 -3.1 -2.1 anion permease compare
BWI76_RS21075 -3.0 -1.4 membrane protein compare
BWI76_RS01350 -3.0 -0.8 NAD(P)H-flavin reductase compare
BWI76_RS08520 -2.9 -1.9 colicin transporter TolQ compare
BWI76_RS06680 -2.9 -1.4 hypothetical protein compare
BWI76_RS13755 -2.9 -1.1 hypothetical protein compare
BWI76_RS00355 -2.7 -1.8 DNA polymerase I compare
BWI76_RS01630 -2.7 -1.0 16S ribosomal RNA compare
BWI76_RS17980 -2.7 -4.9 RNA chaperone ProQ compare
BWI76_RS01800 -2.6 -2.5 glucose-6-phosphate isomerase compare
BWI76_RS09760 -2.6 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS24580 -2.6 -2.5 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS21350 -2.6 -2.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS24605 -2.6 -5.6 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS17975 -2.6 -5.1 tail-specific protease compare
BWI76_RS15825 -2.5 -1.0 hypothetical protein compare
BWI76_RS01210 -2.5 -1.2 tyrosine recombinase XerC compare
BWI76_RS19905 -2.5 -4.3 OmpK36 porin compare
BWI76_RS22690 -2.5 -1.5 adenylyl-sulfate kinase compare
BWI76_RS00720 -2.5 -2.3 DNA-binding response regulator compare
BWI76_RS10935 -2.4 -4.8 glucan biosynthesis glucosyltransferase H compare
BWI76_RS08210 -2.4 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS01095 -2.3 -1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS23920 -2.3 -2.0 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS05450 -2.2 -0.8 ribonuclease HI compare
BWI76_RS00875 -2.2 -3.9 DNA-binding transcriptional regulator FabR compare
BWI76_RS08605 -2.2 -1.8 phosphoglyceromutase compare
BWI76_RS08040 -2.1 -1.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS09615 -2.1 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS00240 -2.0 -1.1 FMN-binding protein MioC compare
BWI76_RS05120 -2.0 -6.3 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS07465 -2.0 -1.0 TetR family transcriptional regulator compare
BWI76_RS09730 -2.0 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS19770 -1.9 -1.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS16425 -1.9 -3.5 hypothetical protein compare
BWI76_RS17720 -1.9 -0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS24900 -1.9 -1.4 DeoR family transcriptional regulator compare
BWI76_RS05570 -1.8 -1.1 hypothetical protein compare
BWI76_RS16490 -1.8 -1.3 glutaredoxin compare
BWI76_RS11300 -1.8 -0.8 cupin compare
BWI76_RS13435 -1.8 -1.3 hypothetical protein compare
BWI76_RS09970 -1.8 -1.1 porin OmpA compare
BWI76_RS12205 -1.8 -2.7 hypothetical protein compare
BWI76_RS10950 -1.8 -2.2 MFS transporter compare
BWI76_RS02745 -1.8 -1.3 hypothetical protein compare
BWI76_RS12090 -1.7 -1.5 HNH endonuclease compare
BWI76_RS09640 -1.7 -1.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS07510 -1.7 -1.8 hypothetical protein compare
BWI76_RS04160 -1.7 -2.0 phosphoserine phosphatase compare
BWI76_RS23490 -1.7 -4.8 fimbrial protein compare
BWI76_RS12225 -1.7 -2.6 hypothetical protein compare
BWI76_RS23365 -1.7 -3.3 LysR family transcriptional regulator compare
BWI76_RS09190 -1.7 -1.6 hypothetical protein compare
BWI76_RS02550 -1.7 -4.1 protease modulator HflC compare
BWI76_RS02530 -1.7 -1.0 tRNA dimethylallyltransferase compare
BWI76_RS08275 -1.7 -1.6 LexA regulated protein compare
BWI76_RS09755 -1.7 -2.3 phosphoserine transaminase compare
BWI76_RS20440 -1.6 -2.5 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS01220 -1.6 -3.3 DNA-dependent helicase II compare
BWI76_RS24400 -1.6 -2.8 outer membrane channel protein TolC compare
BWI76_RS14075 -1.6 -1.6 TetR family transcriptional regulator compare
BWI76_RS12345 -1.6 -2.8 nitrite transporter compare
BWI76_RS22755 -1.6 -3.8 phosphoadenosine phosphosulfate reductase compare
BWI76_RS11155 -1.6 -1.9 penicillin-binding protein activator LpoB compare
BWI76_RS18240 -1.6 -1.6 L-arabinose ABC transporter permease AraH compare
BWI76_RS07185 -1.6 -1.0 hypothetical protein compare
BWI76_RS15110 -1.6 -4.5 putative excinuclease ABC subunit A compare
BWI76_RS26095 -1.6 -0.6 shikimate kinase compare
BWI76_RS22625 -1.6 -1.2 transcriptional regulator compare
BWI76_RS03660 -1.6 -2.9 hypothetical protein compare
BWI76_RS08430 -1.6 -4.5 succinate--CoA ligase subunit alpha compare
BWI76_RS07785 -1.6 -1.4 transcriptional regulator compare
BWI76_RS00715 -1.6 -1.1 two-component sensor histidine kinase compare
BWI76_RS03080 -1.6 -4.4 (Fe-S)-cluster assembly protein compare
BWI76_RS26390 -1.6 -3.7 cell division protein FtsX compare
BWI76_RS02340 -1.6 -4.5 membrane protein FxsA compare
BWI76_RS12855 -1.6 -1.7 enamine deaminase RidA compare
BWI76_RS02815 -1.6 -1.0 fructose-bisphosphatase class I compare
BWI76_RS01125 -1.6 -3.5 4-alpha-L-fucosyltransferase compare
BWI76_RS21580 -1.5 -0.7 SsrA-binding protein compare
BWI76_RS12265 -1.5 -4.7 hypothetical protein compare
BWI76_RS21370 -1.5 -0.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS21345 -1.5 -2.0 sigma-E factor regulatory protein RseB compare
BWI76_RS16210 -1.5 -1.2 hypothetical protein compare
BWI76_RS19040 -1.5 -6.3 hypothetical protein compare
BWI76_RS21235 -1.5 -0.6 hypothetical protein compare
BWI76_RS15975 -1.5 -0.9 hypothetical protein compare
BWI76_RS24850 -1.5 -3.6 DeoR family transcriptional regulator compare
BWI76_RS01080 -1.5 -4.7 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS13785 -1.5 -1.5 ABC transporter permease compare
BWI76_RS26410 -1.5 -1.3 membrane protein compare
BWI76_RS16275 -1.5 -2.0 fumarate hydratase FumA compare
BWI76_RS15760 -1.5 -1.5 hypothetical protein compare
BWI76_RS02610 -1.5 -2.6 transcriptional regulator compare
BWI76_RS01105 -1.5 -3.4 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS27440 -1.5 -1.6 DNA helicase RecG compare
BWI76_RS12375 -1.4 -1.7 DNA-invertase hin compare
BWI76_RS26075 -1.4 -1.0 DNA adenine methylase compare
BWI76_RS00965 -1.4 -0.7 acetolactate synthase 2 small subunit compare
BWI76_RS05810 -1.4 -1.0 hypothetical protein compare
BWI76_RS22420 -1.4 -1.5 LacI family transcriptional regulator compare
BWI76_RS11520 -1.4 -1.0 hypothetical protein compare
BWI76_RS12040 -1.4 -1.2 hypothetical protein compare
BWI76_RS20280 -1.4 -3.0 phosphodiesterase compare
BWI76_RS10575 -1.4 -1.0 polar amino acid ABC transporter permease compare
BWI76_RS09825 -1.4 -3.4 envelope biogenesis factor ElyC compare
BWI76_RS01115 -1.4 -1.5 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS00180 -1.3 -0.5 F0F1 ATP synthase subunit epsilon compare
BWI76_RS05840 -1.3 -2.2 glutamate 5-kinase compare
BWI76_RS07730 -1.3 -0.7 iron-enterobactin transporter membrane protein compare
BWI76_RS15660 -1.3 -1.3 hypothetical protein compare
BWI76_RS12985 -1.3 -1.3 transcriptional regulator compare
BWI76_RS04705 -1.3 -2.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS14320 -1.3 -1.2 hypothetical protein compare
BWI76_RS10350 -1.3 -4.2 EamA family transporter compare
BWI76_RS12215 -1.3 -2.9 HNH endonuclease compare
BWI76_RS11600 -1.3 -1.6 selenide, water dikinase SelD compare
BWI76_RS08750 -1.3 -1.0 kinase inhibitor compare
BWI76_RS01185 -1.3 -0.8 adenylate cyclase compare
BWI76_RS15115 -1.2 -0.8 MFS transporter compare
BWI76_RS21570 -1.2 -1.8 RnfH family protein compare
BWI76_RS21810 -1.2 -1.2 universal stress protein compare
BWI76_RS06525 -1.2 -2.6 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS15690 -1.2 -2.3 hypothetical protein compare
BWI76_RS01200 -1.2 -0.7 diaminopimelate epimerase compare
BWI76_RS06520 -1.2 -2.8 trigger factor compare
BWI76_RS12170 -1.2 -1.6 hypothetical protein compare
BWI76_RS24505 -1.2 -3.6 urease subunit beta compare
BWI76_RS07120 -1.2 -5.6 LacI family transcriptional regulator compare
BWI76_RS00440 -1.2 -1.0 CopG family transcriptional regulator compare
BWI76_RS26470 -1.2 -2.2 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS21460 -1.2 -0.8 translation inhibitor protein RaiA compare
BWI76_RS22765 -1.2 -4.8 sulfite reductase subunit alpha compare
BWI76_RS13715 -1.2 -2.3 2-chlorobenzoate 1 2-dioxygenase electron transfer subunit compare
BWI76_RS04100 -1.2 -2.1 peptide chain release factor 3 compare
BWI76_RS04270 -1.2 -2.6 transaldolase compare
BWI76_RS12220 -1.2 -5.4 hypothetical protein compare
BWI76_RS20475 -1.2 -2.5 phospholipid-binding lipoprotein MlaA compare
BWI76_RS12290 -1.2 -4.9 hypothetical protein compare
BWI76_RS09305 -1.2 -2.1 hypothetical protein compare
BWI76_RS26670 -1.1 -5.7 two-component sensor histidine kinase compare
BWI76_RS12305 -1.1 -4.0 hypothetical protein compare
BWI76_RS12195 -1.1 -2.5 hypothetical protein compare
BWI76_RS06730 -1.1 -1.4 lac repressor compare
BWI76_RS24405 -1.1 -3.1 hypothetical protein compare
BWI76_RS16375 -1.1 -1.1 electron transport complex subunit G compare
BWI76_RS23500 -1.1 -7.6 hypothetical protein compare
BWI76_RS12750 -1.1 -2.2 hypothetical protein compare
BWI76_RS27305 -1.1 -5.6 glycosyl transferase compare
BWI76_RS12335 -1.1 -3.7 hypothetical protein compare
BWI76_RS15940 -1.1 -1.8 DMSO reductase maturation protein DsmD compare
BWI76_RS01135 -1.1 -1.9 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS12240 -1.1 -2.9 terminase small subunit compare
BWI76_RS11275 -1.1 -3.9 sensor protein PhoQ compare
BWI76_RS17805 -1.1 -1.0 membrane protein compare
BWI76_RS01170 -1.1 -1.9 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS02880 -1.1 -2.1 membrane protein compare
BWI76_RS27390 -1.1 -3.1 ribonuclease PH compare
BWI76_RS03105 -1.1 -0.8 myo-inosose-2 dehydratase compare
BWI76_RS00940 -1.1 -2.9 transcriptional regulator HdfR compare
BWI76_RS06510 -1.1 -2.6 BolA family transcriptional regulator compare
BWI76_RS20135 -1.1 -2.0 NADH-quinone oxidoreductase subunit M compare
BWI76_RS12145 -1.1 -1.1 hypothetical protein compare
BWI76_RS21250 -1.1 -3.7 two-component system response regulator GlrR compare
BWI76_RS12400 -1.1 -3.3 TetR family transcriptional regulator compare
BWI76_RS05180 -1.1 -5.0 serine endoprotease DegQ compare
BWI76_RS02725 -1.1 -0.7 HxlR family transcriptional regulator compare
BWI76_RS23330 -1.0 -2.4 transcriptional regulator GalR compare
BWI76_RS20190 -1.0 -3.4 NADH-quinone oxidoreductase subunit A compare
BWI76_RS04525 -1.0 -0.8 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS03595 -1.0 -1.6 ethanolamine utilization protein EutM compare
BWI76_RS21310 -1.0 -0.5 DNA repair protein RecO compare
BWI76_RS12250 -1.0 -5.6 terminase compare
BWI76_RS20270 -1.0 -2.9 hypothetical protein compare
BWI76_RS04645 -1.0 -1.8 3-dehydroquinase compare
BWI76_RS16250 -1.0 -2.4 DNA-binding response regulator compare
BWI76_RS24920 -1.0 -0.8 YraN family protein compare
BWI76_RS20145 -1.0 -0.9 NADH-quinone oxidoreductase subunit K compare
BWI76_RS23285 -1.0 -1.3 hypothetical protein compare
BWI76_RS15150 -1.0 -2.4 outer membrane efflux protein compare
BWI76_RS05915 -1.0 -2.1 helix-turn-helix transcriptional regulator compare
BWI76_RS15840 -1.0 -2.0 prophage protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^5 spores/mL across organisms