Experiment set13IT064 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cobalt chloride hexahydrate 0.6 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_563 -3.4 -8.4 Serine transporter conserved
Pf6N2E2_4052 -3.2 -1.6 FIG00955481: hypothetical protein compare
Pf6N2E2_659 -3.1 -2.6 Transcriptional regulatory protein ompR compare
Pf6N2E2_4071 -3.0 -4.0 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5679 -2.9 -2.9 hypothetical protein compare
Pf6N2E2_3607 -2.8 -7.6 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3829 -2.7 -3.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_4537 -2.7 -2.6 Type III secretion inner membrane protein (YscS,homologous to flagellar export components) compare
Pf6N2E2_5111 -2.7 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_4612 -2.7 -3.6 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_1315 -2.6 -2.4 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_3661 -2.6 -6.1 hypothetical protein compare
Pf6N2E2_5155 -2.5 -2.9 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4797 -2.5 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1634 -2.5 -4.0 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_2518 -2.4 -3.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3847 -2.4 -2.3 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3612 -2.3 -2.2 HflK protein compare
Pf6N2E2_4391 -2.2 -5.5 D-amino acid dehydrogenase small subunit (EC 1.4.99.1) compare
Pf6N2E2_622 -2.2 -2.9 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_446 -2.1 -5.3 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_2447 -2.1 -5.9 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4453 -2.1 -11.5 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_4615 -2.1 -1.9 type IV pili signal transduction protein PilI compare
Pf6N2E2_4120 -2.0 -11.1 Trk system potassium uptake protein TrkA compare
Pf6N2E2_170 -2.0 -2.3 lipoprotein, putative compare
Pf6N2E2_4360 -2.0 -8.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_5430 -2.0 -2.7 Transglycosylase, Slt family compare
Pf6N2E2_4381 -2.0 -3.2 hypothetical protein compare
Pf6N2E2_4810 -1.9 -6.9 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_4153 -1.9 -3.4 Sensory box histidine kinase compare
Pf6N2E2_5705 -1.9 -3.5 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2064 -1.9 -2.1 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5150 -1.9 -4.3 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5758 -1.9 -2.1 FIG00957314: hypothetical protein compare
Pf6N2E2_621 -1.8 -3.3 TPR domain protein in aerotolerance operon compare
Pf6N2E2_1534 -1.8 -1.6 Probable transmembrane protein compare
Pf6N2E2_5669 -1.8 -5.8 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_5544 -1.7 -5.4 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_3533 -1.7 -2.5 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_4155 -1.7 -7.3 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2129 -1.7 -3.4 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3021 -1.7 -1.4 hypothetical protein compare
Pf6N2E2_4187 -1.7 -6.8 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4077 -1.7 -3.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1625 -1.6 -2.1 Ferric reductase (1.6.99.14) compare
Pf6N2E2_367 -1.6 -2.4 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_5668 -1.6 -3.5 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_3885 -1.6 -1.1 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Pf6N2E2_3667 -1.6 -1.8 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_5006 -1.6 -4.2 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_3351 -1.6 -2.8 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2258 -1.6 -5.9 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5743 -1.6 -3.2 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_5671 -1.6 -2.7 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_4421 -1.5 -4.6 hypothetical protein compare
Pf6N2E2_1128 -1.5 -1.3 Two-component response regulator compare
Pf6N2E2_1635 -1.5 -3.5 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_939 -1.5 -2.3 hypothetical protein compare
Pf6N2E2_2282 -1.5 -1.4 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_2810 -1.5 -3.3 Cardiolipin synthetase (EC 2.7.8.-) compare
Pf6N2E2_1032 -1.5 -1.4 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_3461 -1.5 -0.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1632 -1.5 -2.3 Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1) compare
Pf6N2E2_3062 -1.5 -1.7 Membrane-associated zinc metalloprotease compare
Pf6N2E2_4545 -1.5 -1.9 hypothetical protein compare
Pf6N2E2_309 -1.5 -1.3 FIG00957702: hypothetical protein compare
Pf6N2E2_2080 -1.5 -1.3 hypothetical protein compare
Pf6N2E2_4969 -1.5 -1.2 hypothetical protein compare
Pf6N2E2_4276 -1.5 -3.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_1492 -1.5 -2.5 No significant database matches compare
Pf6N2E2_2885 -1.5 -4.1 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_4136 -1.5 -5.3 Aromatic ring-cleaving dioxygenase compare
Pf6N2E2_3908 -1.4 -2.4 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2912 -1.4 -1.3 FIG00954094: hypothetical protein compare
Pf6N2E2_5261 -1.4 -0.6 FIG00956983: hypothetical protein compare
Pf6N2E2_4399 -1.4 -4.5 GGDEF domain/EAL domain protein compare
Pf6N2E2_525 -1.4 -4.2 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5527 -1.4 -2.0 Cold shock protein CspC compare
Pf6N2E2_1997 -1.4 -2.5 FIG00956406: hypothetical protein compare
Pf6N2E2_2634 -1.4 -6.5 Potassium uptake protein TrkH compare
Pf6N2E2_1912 -1.4 -2.6 hypothetical protein compare
Pf6N2E2_5955 -1.4 -2.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_5711 -1.4 -4.6 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_193 -1.4 -2.8 hypothetical protein compare
Pf6N2E2_5331 -1.4 -3.4 ATPase, AFG1 family compare
Pf6N2E2_4617 -1.4 -9.3 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Pf6N2E2_2261 -1.4 -2.7 VacJ-like lipoprotein precursor compare
Pf6N2E2_1660 -1.4 -2.1 RND efflux system, membrane fusion protein CmeA compare
Pf6N2E2_924 -1.4 -1.4 Transcriptional regulator XdhR, TetR family compare
Pf6N2E2_5346 -1.4 -1.7 rRNA small subunit methyltransferase I compare
Pf6N2E2_3321 -1.4 -4.5 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_3610 -1.4 -3.3 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf6N2E2_1633 -1.3 -2.0 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_3666 -1.3 -1.2 InaA protein compare
Pf6N2E2_5842 -1.3 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_2418 -1.3 -1.7 DNA-binding response regulator, LuxR family compare
Pf6N2E2_3325 -1.3 -1.5 ABC transporter, ATP-binding protein compare
Pf6N2E2_5520 -1.3 -4.0 Sensory box histidine kinase compare
Pf6N2E2_4684 -1.3 -3.4 hypothetical protein compare
Pf6N2E2_2938 -1.3 -2.6 Outer membrane lipoprotein compare
Pf6N2E2_2088 -1.3 -1.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Pf6N2E2_5178 -1.3 -2.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3079 -1.3 -5.1 Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA compare
Pf6N2E2_3763 -1.3 -1.2 hypothetical protein compare
Pf6N2E2_5534 -1.3 -1.5 FIG000859: hypothetical protein YebC compare
Pf6N2E2_4188 -1.3 -2.3 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_1676 -1.3 -1.1 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_5252 -1.2 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_4584 -1.2 -1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_3919 -1.2 -5.7 Cystine ABC transporter, periplasmic cystine-binding protein FliY compare
Pf6N2E2_4635 -1.2 -4.5 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_2503 -1.2 -1.3 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_5573 -1.2 -2.7 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_3081 -1.2 -3.9 HesA/MoeB/ThiF family protein related to EC-YgdL compare
Pf6N2E2_2274 -1.2 -1.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_1437 -1.2 -2.6 Acyl-CoA dehydrogenase family protein compare
Pf6N2E2_3920 -1.2 -7.5 Cystine ABC transporter, permease protein compare
Pf6N2E2_3255 -1.2 -2.4 YrbA protein compare
Pf6N2E2_5321 -1.2 -6.1 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_5320 -1.2 -4.9 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_1044 -1.2 -1.4 hypothetical protein compare
Pf6N2E2_3611 -1.2 -1.2 HflC protein compare
Pf6N2E2_127 -1.2 -1.5 AttE component of AttEFGH ABC transport system compare
Pf6N2E2_3571 -1.2 -2.9 Urease accessory protein UreF compare
Pf6N2E2_5452 -1.2 -2.1 hypothetical protein compare
Pf6N2E2_6140 -1.2 -0.7 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_248 -1.2 -2.6 hypothetical protein compare
Pf6N2E2_2700 -1.1 -4.7 Cysteine synthase (EC 2.5.1.47) compare
Pf6N2E2_1323 -1.1 -2.4 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4614 -1.1 -2.1 twitching motility protein PilH compare
Pf6N2E2_2985 -1.1 -1.9 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_4636 -1.1 -3.6 periplasmic binding protein, putative compare
Pf6N2E2_3283 -1.1 -3.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_5300 -1.1 -6.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5776 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_1653 -1.1 -3.2 NADH:flavin oxidoreductase/NADH oxidase compare
Pf6N2E2_2010 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_3498 -1.1 -1.9 FIG00953349: hypothetical protein compare
Pf6N2E2_5183 -1.1 -5.7 Paraquat-inducible protein B compare
Pf6N2E2_1987 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_3550 -1.1 -1.9 Urea ABC transporter, ATPase protein UrtD compare
Pf6N2E2_4382 -1.1 -4.7 FIG00953403: hypothetical protein compare
Pf6N2E2_1246 -1.1 -1.5 FIG00961372: hypothetical protein compare
Pf6N2E2_2534 -1.1 -2.8 Cell division protein BolA compare
Pf6N2E2_814 -1.1 -2.1 hypothetical protein compare
Pf6N2E2_4988 -1.1 -2.9 Antiholin-like protein LrgA compare
Pf6N2E2_1081 -1.1 -1.5 probable membrane protein YPO3302 compare
Pf6N2E2_374 -1.1 -2.0 FIG00953249: hypothetical protein compare
Pf6N2E2_5768 -1.1 -2.1 DNA recombination-dependent growth factor C compare
Pf6N2E2_5494 -1.1 -2.4 Pyruvate kinase (EC 2.7.1.40) compare
Pf6N2E2_2264 -1.1 -1.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2941 -1.1 -3.4 Esterase A compare
Pf6N2E2_3039 -1.1 -4.9 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5843 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_3791 -1.1 -6.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_4087 -1.1 -5.7 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf6N2E2_3792 -1.1 -4.3 Glucans biosynthesis protein G precursor compare
Pf6N2E2_1804 -1.1 -1.9 Immune-responsive protein 1 compare
Pf6N2E2_817 -1.1 -4.6 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_1477 -1.1 -2.7 hypothetical protein compare
Pf6N2E2_1502 -1.0 -1.7 Two-component system regulatory protein compare
Pf6N2E2_4908 -1.0 -4.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5703 -1.0 -2.1 outer membrane protein H1 compare
Pf6N2E2_1636 -1.0 -3.5 Ferrichrome-iron receptor compare
Pf6N2E2_2549 -1.0 -1.3 hypothetical protein compare
Pf6N2E2_3270 -1.0 -2.7 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_1249 -1.0 -1.8 Transcriptional regulator, AraC family compare
Pf6N2E2_620 -1.0 -2.5 BatD compare
Pf6N2E2_4422 -1.0 -1.2 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_4369 -1.0 -0.7 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1683 -1.0 -1.6 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_5394 -1.0 -2.6 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_2904 -1.0 -1.3 Hypothetical protein DUF454 compare
Pf6N2E2_5840 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_1705 -1.0 -1.2 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_48 -1.0 -2.1 FIG00955661: hypothetical protein compare
Pf6N2E2_902 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_322 -1.0 -2.7 Transcriptional regulator, LacI family compare
Pf6N2E2_2861 -1.0 -2.0 hypothetical protein compare
Pf6N2E2_3517 -1.0 -2.7 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf6N2E2_2666 -1.0 -2.4 hypothetical protein compare
Pf6N2E2_87 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_2852 -1.0 -3.8 GGDEF domain/EAL domain protein compare
Pf6N2E2_189 -1.0 -1.9 regulatory protein, putative compare
Pf6N2E2_2371 -1.0 -1.5 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_2526 -1.0 -3.0 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_2870 -1.0 -1.4 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_1343 -1.0 -2.3 Transcriptional regulator compare
Pf6N2E2_5687 -1.0 -4.8 Transporter, MFS superfamily compare
Pf6N2E2_5317 -1.0 -6.6 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_4413 -1.0 -4.0 FIG004064: hypothetical protein compare
Pf6N2E2_3820 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_5756 -1.0 -2.1 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_762 -1.0 -3.9 FIG00960186: hypothetical protein compare
Pf6N2E2_3257 -1.0 -1.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_4390 -1.0 -4.3 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_827 -1.0 -1.4 probable dioxygenase compare
Pf6N2E2_3252 -1.0 -3.6 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_319 -1.0 -2.4 DUF1850 domain-containing protein compare


Specific Phenotypes

For 24 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Cobalt chloride hexahydrate across organisms