Experiment set13IT064 for Klebsiella michiganensis M5al

Compare to:

LB 1x with Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS26460 -5.7 -3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -4.8 -1.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS23265 -4.6 -1.7 hypothetical protein compare
BWI76_RS19840 -4.4 -1.2 hypothetical protein compare
BWI76_RS02725 -4.2 -1.1 HxlR family transcriptional regulator compare
BWI76_RS08520 -4.1 -1.9 colicin transporter TolQ compare
BWI76_RS09760 -3.8 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS08535 -3.8 -1.7 translocation protein TolB compare
BWI76_RS09645 -3.7 -1.0 thioredoxin-disulfide reductase compare
BWI76_RS04160 -3.6 -3.4 phosphoserine phosphatase compare
BWI76_RS25335 -3.5 -1.6 stringent starvation protein A compare
BWI76_RS01115 -3.4 -3.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS08530 -3.3 -1.3 protein TolA compare
BWI76_RS20380 -3.3 -0.9 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS08525 -3.3 -2.6 colicin transporter compare
BWI76_RS16490 -3.3 -1.5 glutaredoxin compare
BWI76_RS17980 -3.1 -3.4 RNA chaperone ProQ compare
BWI76_RS26570 -3.1 -2.1 anion permease compare
BWI76_RS05260 -3.0 -1.1 chaperone compare
BWI76_RS06680 -2.9 -1.3 hypothetical protein compare
BWI76_RS05235 -2.9 -1.3 hypothetical protein compare
BWI76_RS01800 -2.9 -2.0 glucose-6-phosphate isomerase compare
BWI76_RS26620 -2.9 -0.7 Fe-S biogenesis protein NfuA compare
BWI76_RS00875 -2.8 -5.2 DNA-binding transcriptional regulator FabR compare
BWI76_RS23920 -2.8 -2.0 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS21235 -2.8 -0.7 hypothetical protein compare
BWI76_RS21070 -2.8 -1.5 outer membrane protein assembly factor BamB compare
BWI76_RS00355 -2.7 -1.7 DNA polymerase I compare
BWI76_RS06535 -2.6 -3.0 endopeptidase La compare
BWI76_RS01125 -2.6 -4.9 4-alpha-L-fucosyltransferase compare
BWI76_RS15825 -2.6 -1.0 hypothetical protein compare
BWI76_RS04645 -2.6 -3.8 3-dehydroquinase compare
BWI76_RS01210 -2.5 -1.1 tyrosine recombinase XerC compare
BWI76_RS05015 -2.5 -1.9 transcriptional regulator compare
BWI76_RS21345 -2.5 -2.5 sigma-E factor regulatory protein RseB compare
BWI76_RS08210 -2.4 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS21075 -2.4 -1.5 membrane protein compare
BWI76_RS01220 -2.4 -5.0 DNA-dependent helicase II compare
BWI76_RS09755 -2.4 -2.7 phosphoserine transaminase compare
BWI76_RS12070 -2.3 -1.2 hypothetical protein compare
BWI76_RS01095 -2.3 -2.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS09640 -2.3 -2.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS22420 -2.2 -2.2 LacI family transcriptional regulator compare
BWI76_RS05450 -2.2 -0.8 ribonuclease HI compare
BWI76_RS00400 -2.2 -1.0 glutamine synthetase compare
BWI76_RS24885 -2.2 -1.0 PTS galactitol transporter subunit IIB compare
BWI76_RS27440 -2.2 -1.5 DNA helicase RecG compare
BWI76_RS21350 -2.2 -4.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS21370 -2.1 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS16965 -2.1 -1.8 murein lipoprotein compare
BWI76_RS24740 -2.1 -2.8 GntR family transcriptional regulator compare
BWI76_RS09730 -2.1 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS15015 -2.0 -1.3 DUF2132 domain-containing protein compare
BWI76_RS09335 -2.0 -0.9 baseplate assembly protein W compare
BWI76_RS16895 -2.0 -1.5 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS24605 -2.0 -5.1 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS24580 -2.0 -4.8 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS05120 -2.0 -5.7 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS07740 -2.0 -1.5 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS19495 -2.0 -1.0 ABC transporter, quaternary amine uptake transporter (QAT) family, ATP-binding protein compare
BWI76_RS17720 -2.0 -0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS01385 -2.0 -2.1 potassium transporter compare
BWI76_RS00240 -2.0 -1.0 FMN-binding protein MioC compare
BWI76_RS01110 -2.0 -4.1 TDP-fucosamine acetyltransferase compare
BWI76_RS04705 -1.9 -3.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS09190 -1.9 -1.3 hypothetical protein compare
BWI76_RS10990 -1.9 -2.7 dihydroorotase compare
BWI76_RS13445 -1.9 -1.5 alpha/beta hydrolase compare
BWI76_RS27940 -1.9 -1.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BWI76_RS05840 -1.9 -2.5 glutamate 5-kinase compare
BWI76_RS22755 -1.8 -2.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS26730 -1.8 -4.0 inner membrane protein YhjD compare
BWI76_RS15110 -1.8 -4.4 putative excinuclease ABC subunit A compare
BWI76_RS20280 -1.8 -4.1 phosphodiesterase compare
BWI76_RS01080 -1.8 -5.7 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS10575 -1.8 -1.1 polar amino acid ABC transporter permease compare
BWI76_RS01350 -1.8 -0.6 NAD(P)H-flavin reductase compare
BWI76_RS13820 -1.8 -1.3 hypothetical protein compare
BWI76_RS14065 -1.8 -1.7 hypothetical protein compare
BWI76_RS04305 -1.8 -1.1 molecular chaperone DnaJ compare
BWI76_RS12265 -1.8 -5.9 hypothetical protein compare
BWI76_RS00720 -1.8 -1.6 DNA-binding response regulator compare
BWI76_RS04715 -1.7 -2.0 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS09625 -1.7 -1.0 hypothetical protein compare
BWI76_RS20360 -1.7 -0.6 cell division protein DedD compare
BWI76_RS18920 -1.7 -2.8 ATP phosphoribosyltransferase compare
BWI76_RS06475 -1.7 -0.8 protoheme IX farnesyltransferase compare
BWI76_RS14320 -1.7 -1.5 hypothetical protein compare
BWI76_RS19330 -1.7 -0.8 HAD family hydrolase compare
BWI76_RS10935 -1.7 -3.5 glucan biosynthesis glucosyltransferase H compare
BWI76_RS02530 -1.6 -0.9 tRNA dimethylallyltransferase compare
BWI76_RS01135 -1.6 -2.9 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS01105 -1.6 -5.4 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS14915 -1.6 -2.9 hypothetical protein compare
BWI76_RS21340 -1.6 -1.7 SoxR reducing system protein RseC compare
BWI76_RS26095 -1.6 -0.6 shikimate kinase compare
BWI76_RS23285 -1.6 -1.7 hypothetical protein compare
BWI76_RS18165 -1.6 -1.2 NUDIX pyrophosphatase compare
BWI76_RS01870 -1.5 -3.7 diacylglycerol kinase compare
BWI76_RS17975 -1.5 -3.1 tail-specific protease compare
BWI76_RS00380 -1.5 -5.7 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS16220 -1.5 -1.6 hypothetical protein compare
BWI76_RS24900 -1.5 -1.3 DeoR family transcriptional regulator compare
BWI76_RS20270 -1.5 -4.2 hypothetical protein compare
BWI76_RS20490 -1.4 -2.0 hypothetical protein compare
BWI76_RS08495 -1.4 -3.4 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS09670 -1.4 -1.9 recombination factor protein RarA compare
BWI76_RS10745 -1.4 -0.8 hypothetical protein compare
BWI76_RS15840 -1.4 -2.6 prophage protein compare
BWI76_RS20180 -1.4 -3.8 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS23360 -1.4 -1.3 diaminopimelate decarboxylase compare
BWI76_RS20145 -1.4 -1.1 NADH-quinone oxidoreductase subunit K compare
BWI76_RS01170 -1.4 -2.7 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS23490 -1.4 -3.5 fimbrial protein compare
BWI76_RS19905 -1.4 -2.6 OmpK36 porin compare
BWI76_RS09970 -1.4 -1.0 porin OmpA compare
BWI76_RS00715 -1.4 -1.3 two-component sensor histidine kinase compare
BWI76_RS15195 -1.4 -1.4 DUF4186 domain-containing protein compare
BWI76_RS19010 -1.4 -1.8 polysaccharide pyruvyl transferase yvff compare
BWI76_RS22950 -1.4 -1.5 membrane protein compare
BWI76_RS13595 -1.4 -2.9 transcriptional regulator compare
BWI76_RS24850 -1.4 -4.0 DeoR family transcriptional regulator compare
BWI76_RS07465 -1.3 -0.5 TetR family transcriptional regulator compare
BWI76_RS19770 -1.3 -1.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS16375 -1.3 -1.9 electron transport complex subunit G compare
BWI76_RS09615 -1.3 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS23495 -1.3 -4.4 hypothetical protein compare
BWI76_RS19730 -1.3 -3.2 1-phosphofructokinase compare
BWI76_RS09940 -1.3 -2.7 paraquat-inducible protein B compare
BWI76_RS26670 -1.3 -5.6 two-component sensor histidine kinase compare
BWI76_RS26470 -1.3 -3.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS13920 -1.3 -6.0 magnesium-translocating P-type ATPase compare
BWI76_RS00180 -1.3 -0.5 F0F1 ATP synthase subunit epsilon compare
BWI76_RS02610 -1.3 -2.6 transcriptional regulator compare
BWI76_RS16500 -1.3 -1.9 superoxide dismutase [Fe] compare
BWI76_RS21140 -1.3 -0.7 molecular chaperone HscA compare
BWI76_RS12090 -1.3 -1.3 HNH endonuclease compare
BWI76_RS16275 -1.3 -1.9 fumarate hydratase FumA compare
BWI76_RS03225 -1.3 -4.6 transcriptional regulator compare
BWI76_RS15115 -1.2 -1.2 MFS transporter compare
BWI76_RS01185 -1.2 -0.8 adenylate cyclase compare
BWI76_RS12195 -1.2 -4.0 hypothetical protein compare
BWI76_RS26410 -1.2 -1.2 membrane protein compare
BWI76_RS15850 -1.2 -1.2 DUF1317 domain-containing protein compare
BWI76_RS00865 -1.2 -2.0 DNA-binding transcriptional regulator OxyR compare
BWI76_RS00140 -1.2 -1.1 phosphate transport system regulator PhoU compare
BWI76_RS11155 -1.2 -1.6 penicillin-binding protein activator LpoB compare
BWI76_RS01200 -1.2 -0.7 diaminopimelate epimerase compare
BWI76_RS08385 -1.2 -1.8 citrate (Si)-synthase compare
BWI76_RS00440 -1.2 -0.9 CopG family transcriptional regulator compare
BWI76_RS08430 -1.2 -3.7 succinate--CoA ligase subunit alpha compare
BWI76_RS26425 -1.2 -5.5 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS12250 -1.2 -7.1 terminase compare
BWI76_RS08020 -1.2 -3.4 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS20170 -1.2 -2.3 NADH-quinone oxidoreductase subunit F compare
BWI76_RS27390 -1.2 -3.2 ribonuclease PH compare
BWI76_RS25300 -1.2 -2.3 hybrid sensor histidine kinase/response regulator compare
BWI76_RS08360 -1.2 -1.9 LamB/YcsF family protein compare
BWI76_RS09825 -1.2 -3.3 envelope biogenesis factor ElyC compare
BWI76_RS21250 -1.2 -4.0 two-component system response regulator GlrR compare
BWI76_RS23500 -1.2 -7.6 hypothetical protein compare
BWI76_RS06520 -1.1 -3.1 trigger factor compare
BWI76_RS19685 -1.1 -2.6 lysine transporter compare
BWI76_RS13195 -1.1 -1.8 glutamate dehydrogenase compare
BWI76_RS16425 -1.1 -1.9 hypothetical protein compare
BWI76_RS13945 -1.1 -2.0 lysine exporter protein LysE/YggA compare
BWI76_RS25280 -1.1 -0.8 RNase adaptor protein RapZ compare
BWI76_RS17805 -1.1 -1.0 membrane protein compare
BWI76_RS23805 -1.1 -4.9 ssDNA exonuclease RecJ compare
BWI76_RS24400 -1.1 -2.7 outer membrane channel protein TolC compare
BWI76_RS15575 -1.1 -2.5 hypothetical protein compare
BWI76_RS27915 -1.1 -1.2 YceK/YidQ family lipoprotein compare
BWI76_RS15705 -1.1 -3.2 putative holin protein compare
BWI76_RS03080 -1.1 -3.4 (Fe-S)-cluster assembly protein compare
BWI76_RS08425 -1.1 -2.7 succinyl-CoA ligase subunit beta compare
BWI76_RS12205 -1.1 -1.8 hypothetical protein compare
BWI76_RS12380 -1.1 -2.7 DNA polymerase V subunit UmuD compare
BWI76_RS10350 -1.1 -4.6 EamA family transporter compare
BWI76_RS08405 -1.1 -1.3 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS20130 -1.1 -3.0 NADH-quinone oxidoreductase subunit N compare
BWI76_RS27425 -1.1 -0.9 DNA-directed RNA polymerase subunit omega compare
BWI76_RS17860 -1.1 -0.9 YoaH family protein compare
BWI76_RS12220 -1.1 -5.7 hypothetical protein compare
BWI76_RS10305 -1.1 -4.3 transposase compare
BWI76_RS18915 -1.1 -2.0 NAD(P)-dependent oxidoreductase compare
BWI76_RS04525 -1.1 -0.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS04530 -1.1 -1.0 peptidylprolyl isomerase SurA compare
BWI76_RS09305 -1.1 -1.8 hypothetical protein compare
BWI76_RS21410 -1.1 -1.8 lipoprotein compare
BWI76_RS25215 -1.1 -2.8 phospholipid-binding protein MlaC compare
BWI76_RS22485 -1.1 -2.6 hypothetical protein compare
BWI76_RS13915 -1.0 -4.3 magnesium transport protein MgtC compare
BWI76_RS20190 -1.0 -3.4 NADH-quinone oxidoreductase subunit A compare
BWI76_RS03595 -1.0 -1.4 ethanolamine utilization protein EutM compare
BWI76_RS12215 -1.0 -1.7 HNH endonuclease compare
BWI76_RS20155 -1.0 -1.2 NADH-quinone oxidoreductase subunit I compare
BWI76_RS15810 -1.0 -3.7 hypothetical protein compare
BWI76_RS08395 -1.0 -1.0 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS10950 -1.0 -1.5 MFS transporter compare
BWI76_RS24595 -1.0 -1.4 dihydroxyacetone kinase subunit DhaK compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma virens G41 spores at 2.5*10^6 spores/mL across organisms