Experiment set13IT063 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Cobalt chloride hexahydrate 0.4 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4071 -3.2 -4.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5111 -2.9 -2.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_623 -2.8 -1.5 FIG00954674: hypothetical protein compare
Pf6N2E2_4743 -2.7 -1.4 hypothetical protein compare
Pf6N2E2_5346 -2.7 -1.8 rRNA small subunit methyltransferase I compare
Pf6N2E2_3661 -2.6 -6.7 hypothetical protein compare
Pf6N2E2_3607 -2.5 -8.2 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_1625 -2.4 -2.3 Ferric reductase (1.6.99.14) compare
Pf6N2E2_5679 -2.3 -4.5 hypothetical protein compare
Pf6N2E2_4612 -2.3 -4.2 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_5150 -2.2 -4.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_2549 -2.1 -1.9 hypothetical protein compare
Pf6N2E2_4206 -2.1 -2.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3658 -2.1 -7.9 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_1156 -2.1 -2.6 hypothetical protein compare
Pf6N2E2_1288 -2.0 -2.5 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_88 -2.0 -1.9 hypothetical protein compare
Pf6N2E2_5705 -2.0 -2.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3908 -1.9 -2.2 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3237 -1.9 -3.0 hypothetical protein compare
Pf6N2E2_170 -1.9 -2.7 lipoprotein, putative compare
Pf6N2E2_1635 -1.8 -4.1 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_4974 -1.8 -7.3 DedA protein compare
Pf6N2E2_563 -1.8 -7.6 Serine transporter conserved
Pf6N2E2_3569 -1.7 -1.6 hypothetical protein compare
Pf6N2E2_2129 -1.7 -3.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_3461 -1.7 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5319 -1.7 -6.7 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Pf6N2E2_3611 -1.7 -1.9 HflC protein compare
Pf6N2E2_3134 -1.7 -1.5 hypothetical protein compare
Pf6N2E2_4422 -1.7 -1.9 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf6N2E2_4153 -1.7 -4.1 Sensory box histidine kinase compare
Pf6N2E2_2062 -1.6 -1.6 FIG00955561: hypothetical protein compare
Pf6N2E2_4092 -1.6 -2.9 FIG00954395: hypothetical protein compare
Pf6N2E2_2513 -1.6 -2.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_5317 -1.5 -9.7 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_1598 -1.5 -2.8 Nitrate reductase cytochrome c550-type subunit compare
Pf6N2E2_5321 -1.5 -7.5 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_2646 -1.5 -1.0 FIG00953416: hypothetical protein compare
Pf6N2E2_4591 -1.5 -4.0 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_4057 -1.5 -1.3 lipoprotein, putative compare
Pf6N2E2_5841 -1.5 -1.3 GlcG protein compare
Pf6N2E2_5320 -1.5 -5.7 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_5318 -1.5 -11.2 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_902 -1.5 -2.0 hypothetical protein compare
Pf6N2E2_3847 -1.5 -2.5 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3687 -1.4 -2.7 FIG00959437: hypothetical protein compare
Pf6N2E2_4797 -1.4 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_1783 -1.4 -2.1 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5520 -1.4 -4.6 Sensory box histidine kinase compare
Pf6N2E2_3323 -1.4 -3.1 hypothetical protein compare
Pf6N2E2_2962 -1.4 -2.9 ABC transporter for L-Lysine, ATPase component (from data) compare
Pf6N2E2_4399 -1.4 -4.3 GGDEF domain/EAL domain protein compare
Pf6N2E2_4052 -1.4 -1.3 FIG00955481: hypothetical protein compare
Pf6N2E2_5342 -1.4 -1.8 21 kDa hemolysin precursor compare
Pf6N2E2_5331 -1.4 -3.7 ATPase, AFG1 family compare
Pf6N2E2_2927 -1.4 -2.5 Putative signal peptide protein compare
Pf6N2E2_1040 -1.4 -1.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_6045 -1.4 -1.7 hypothetical protein compare
Pf6N2E2_4162 -1.4 -2.7 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5534 -1.4 -1.8 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3264 -1.3 -4.8 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3283 -1.3 -4.9 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) compare
Pf6N2E2_2413 -1.3 -1.6 FIG074102: hypothetical protein compare
Pf6N2E2_4360 -1.3 -6.7 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf6N2E2_2012 -1.3 -2.2 hypothetical protein compare
Pf6N2E2_5006 -1.3 -4.0 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4762 -1.3 -1.8 Biotin synthesis protein BioH compare
Pf6N2E2_4773 -1.3 -1.1 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5155 -1.3 -2.5 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_304 -1.3 -2.5 Anthranilate phosphoribosyltransferase like (EC 2.4.2.18) compare
Pf6N2E2_5640 -1.2 -1.3 FIG00955597: hypothetical protein compare
Pf6N2E2_1972 -1.2 -1.9 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_1044 -1.2 -1.7 hypothetical protein compare
Pf6N2E2_2518 -1.2 -2.1 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_3659 -1.2 -4.5 Protein fixF compare
Pf6N2E2_1636 -1.2 -4.4 Ferrichrome-iron receptor compare
Pf6N2E2_420 -1.2 -1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2266 -1.2 -1.5 Copper-sensing two-component system response regulator CusR compare
Pf6N2E2_4120 -1.2 -7.8 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2371 -1.2 -1.8 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_1095 -1.2 -1.5 Opine oxidase subunit C compare
Pf6N2E2_446 -1.2 -4.2 Glutathione reductase (EC 1.8.1.7) compare
Pf6N2E2_504 -1.2 -2.3 DNA-binding response regulator compare
Pf6N2E2_2885 -1.2 -3.8 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Pf6N2E2_5252 -1.2 -1.6 FIG00956396: hypothetical protein compare
Pf6N2E2_5678 -1.2 -6.0 hypothetical protein compare
Pf6N2E2_1323 -1.2 -2.5 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_5671 -1.2 -2.6 Succinylglutamate desuccinylase (EC 3.5.1.96) compare
Pf6N2E2_1238 -1.2 -1.8 hypothetical protein compare
Pf6N2E2_2258 -1.2 -5.2 Transaldolase (EC 2.2.1.2) compare
Pf6N2E2_5536 -1.1 -1.0 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2681 -1.1 -1.4 3-phosphoglycerate kinase compare
Pf6N2E2_923 -1.1 -1.4 Haloacid dehalogenase, type II (EC 3.8.1.2) compare
Pf6N2E2_4077 -1.1 -1.9 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3829 -1.1 -2.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_1633 -1.1 -2.8 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_4416 -1.1 -0.7 Tyrosine recombinase XerC compare
Pf6N2E2_75 -1.1 -2.0 Colicin V production protein compare
Pf6N2E2_1199 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_3763 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_4369 -1.1 -1.0 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4453 -1.1 -7.6 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_5676 -1.1 -3.1 Aspartokinase (EC 2.7.2.4) compare
Pf6N2E2_1396 -1.1 -1.3 ABC transporter, ATP-binding protein compare
Pf6N2E2_3021 -1.1 -1.2 hypothetical protein compare
Pf6N2E2_2447 -1.1 -3.7 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_572 -1.1 -1.9 hypothetical protein compare
Pf6N2E2_216 -1.1 -2.9 Copper-sensing two-component system response regulator CpxR compare
Pf6N2E2_1014 -1.1 -1.2 Nitrate/nitrite transporter compare
Pf6N2E2_2034 -1.1 -2.3 Methyltransferase compare
Pf6N2E2_1534 -1.0 -1.3 Probable transmembrane protein compare
Pf6N2E2_2732 -1.0 -3.2 Transcriptional regulator, LysR family compare
Pf6N2E2_1968 -1.0 -2.1 Cobalt-zinc-cadmium resistance protein compare
Pf6N2E2_4413 -1.0 -4.8 FIG004064: hypothetical protein compare
Pf6N2E2_3641 -1.0 -2.0 ADP-ribose pyrophosphatase (EC 3.6.1.13) compare
Pf6N2E2_2367 -1.0 -1.2 hypothetical protein compare
Pf6N2E2_3762 -1.0 -3.5 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_2335 -1.0 -2.9 Transcriptional regulator, GntR family compare
Pf6N2E2_1081 -1.0 -1.6 probable membrane protein YPO3302 compare
Pf6N2E2_4635 -1.0 -4.3 ATP-dependent RNA helicase RhlE compare
Pf6N2E2_3666 -1.0 -1.3 InaA protein compare
Pf6N2E2_1065 -1.0 -1.9 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_4889 -1.0 -5.2 Putative transport protein compare
Pf6N2E2_659 -1.0 -0.8 Transcriptional regulatory protein ompR compare
Pf6N2E2_4113 -1.0 -2.3 Redox-sensing transcriptional regulator QorR compare
Pf6N2E2_555 -1.0 -2.6 Uncharacterized protein ImpB compare
Pf6N2E2_2634 -1.0 -5.3 Potassium uptake protein TrkH compare
Pf6N2E2_817 -1.0 -4.5 Protein-glutamate methylesterase (EC 3.1.1.61) compare
Pf6N2E2_434 -1.0 -1.6 hypothetical protein compare
Pf6N2E2_2477 -1.0 -1.4 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_2572 -1.0 -2.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5669 -1.0 -4.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_4307 -0.9 -2.1 Type VI secretion lipoprotein/VasD compare
Pf6N2E2_2314 -0.9 -1.9 VapB protein (antitoxin to VapC) compare
Pf6N2E2_1652 -0.9 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4464 -0.9 -1.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_2114 -0.9 -2.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_3744 -0.9 -1.8 General secretion pathway protein F compare
Pf6N2E2_595 -0.9 -1.8 Arsenical resistance operon repressor compare
Pf6N2E2_4091 -0.9 -6.1 Oligopeptidase A (EC 3.4.24.70) compare
Pf6N2E2_2674 -0.9 -1.0 FIG00953856: hypothetical protein compare
Pf6N2E2_3003 -0.9 -1.5 Bacteriophage protein GP46 compare
Pf6N2E2_1320 -0.9 -2.2 Putative response regulator compare
Pf6N2E2_476 -0.9 -1.5 Permease of the drug/metabolite transporter (DMT) superfamily compare
Pf6N2E2_5584 -0.9 -1.5 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_1835 -0.9 -2.8 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1656 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_904 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3240 -0.9 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_1236 -0.9 -1.4 Transcriptional regulator, LysR family compare
Pf6N2E2_3024 -0.9 -1.3 Phage tail fibers compare
Pf6N2E2_2010 -0.9 -1.0 hypothetical protein compare
Pf6N2E2_638 -0.9 -1.7 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_2373 -0.9 -1.4 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_1502 -0.9 -1.5 Two-component system regulatory protein compare
Pf6N2E2_5430 -0.9 -2.8 Transglycosylase, Slt family compare
Pf6N2E2_3454 -0.9 -1.2 hypothetical protein compare
Pf6N2E2_3825 -0.9 -2.0 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf6N2E2_2386 -0.9 -1.6 Magnesium and cobalt transport protein CorA compare
Pf6N2E2_1032 -0.9 -1.0 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1147 -0.9 -1.2 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_2128 -0.8 -2.4 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_848 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_421 -0.8 -2.9 Methyl-accepting chemotaxis protein compare
Pf6N2E2_4829 -0.8 -2.4 OsmC/Ohr family protein compare
Pf6N2E2_50 -0.8 -3.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf6N2E2_2536 -0.8 -1.2 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_2465 -0.8 -3.3 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1617 -0.8 -0.9 COG2199: FOG: GGDEF domain compare
Pf6N2E2_2496 -0.8 -1.4 FIG00956575: hypothetical protein compare
Pf6N2E2_1776 -0.8 -1.3 Chemotaxis protein CheD compare
Pf6N2E2_3498 -0.8 -2.1 FIG00953349: hypothetical protein compare
Pf6N2E2_1436 -0.8 -2.3 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_443 -0.8 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_48 -0.8 -1.9 FIG00955661: hypothetical protein compare
Pf6N2E2_552 -0.8 -1.3 Uncharacterized protein ImpF compare
Pf6N2E2_6035 -0.8 -1.7 alpha/beta hydrolase fold compare
Pf6N2E2_4982 -0.8 -2.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) compare
Pf6N2E2_1705 -0.8 -1.1 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_1683 -0.8 -1.8 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_6064 -0.8 -2.6 2-methylaconitate isomerase compare
Pf6N2E2_5840 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_1168 -0.8 -2.0 Transposase compare
Pf6N2E2_6070 -0.8 -1.2 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_309 -0.8 -0.9 FIG00957702: hypothetical protein compare
Pf6N2E2_2306 -0.8 -2.4 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2007 -0.8 -1.9 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_3219 -0.8 -2.0 hypothetical protein compare
Pf6N2E2_2201 -0.8 -2.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_1193 -0.8 -2.4 Outer membrane porin, OprD family compare
Pf6N2E2_2064 -0.8 -1.3 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_4810 -0.8 -4.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_3321 -0.8 -2.2 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_5664 -0.8 -2.5 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
Pf6N2E2_5300 -0.8 -5.1 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_1012 -0.8 -1.4 hypothetical protein compare
Pf6N2E2_3791 -0.8 -4.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2510 -0.8 -1.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4584 -0.8 -1.1 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare


Specific Phenotypes

For 9 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Cobalt chloride hexahydrate across organisms