Experiment set13IT063 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS26460 -5.7 -3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS17980 -5.0 -5.9 RNA chaperone ProQ compare
BWI76_RS17975 -4.8 -5.7 tail-specific protease compare
BWI76_RS26455 -4.7 -2.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS23265 -4.6 -2.0 hypothetical protein compare
BWI76_RS19840 -4.5 -1.4 hypothetical protein compare
BWI76_RS08525 -4.4 -2.2 colicin transporter compare
BWI76_RS08520 -4.2 -2.2 colicin transporter TolQ compare
BWI76_RS05120 -4.2 -11.3 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS05260 -4.2 -1.3 chaperone compare
BWI76_RS08535 -3.9 -2.0 translocation protein TolB compare
BWI76_RS21070 -3.8 -1.9 outer membrane protein assembly factor BamB compare
BWI76_RS25335 -3.5 -1.8 stringent starvation protein A compare
BWI76_RS01095 -3.3 -2.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS11155 -3.3 -2.8 penicillin-binding protein activator LpoB compare
BWI76_RS01115 -3.3 -2.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS26390 -3.2 -9.6 cell division protein FtsX compare
BWI76_RS19770 -3.2 -1.4 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS05015 -3.1 -2.5 transcriptional regulator compare
BWI76_RS16965 -3.0 -3.1 murein lipoprotein compare
BWI76_RS20360 -3.0 -0.9 cell division protein DedD compare
BWI76_RS12070 -3.0 -1.5 hypothetical protein compare
BWI76_RS15825 -2.8 -1.2 hypothetical protein compare
BWI76_RS26395 -2.7 -7.7 cell division protein FtsE compare
BWI76_RS01080 -2.6 -8.5 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS08530 -2.6 -1.5 protein TolA compare
BWI76_RS02780 -2.6 -15.3 translocation and assembly module TamB compare
BWI76_RS01210 -2.5 -1.3 tyrosine recombinase XerC compare
BWI76_RS08210 -2.5 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS06535 -2.5 -2.8 endopeptidase La compare
BWI76_RS02775 -2.5 -6.0 outer membrane protein assembly factor compare
BWI76_RS26440 -2.4 -1.0 hypothetical protein compare
BWI76_RS05235 -2.4 -1.4 hypothetical protein compare
BWI76_RS04645 -2.4 -3.8 3-dehydroquinase compare
BWI76_RS09970 -2.4 -1.2 porin OmpA compare
BWI76_RS24900 -2.4 -1.4 DeoR family transcriptional regulator compare
BWI76_RS01110 -2.3 -3.9 TDP-fucosamine acetyltransferase compare
BWI76_RS04715 -2.3 -2.5 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS09760 -2.3 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS26665 -2.3 -3.7 DNA-binding response regulator compare
BWI76_RS16895 -2.2 -1.8 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS09755 -2.2 -3.9 phosphoserine transaminase compare
BWI76_RS00400 -2.2 -1.1 glutamine synthetase compare
BWI76_RS24400 -2.2 -2.9 outer membrane channel protein TolC compare
BWI76_RS17720 -2.1 -0.6 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS24600 -2.1 -1.7 dihydroxyacetone kinase compare
BWI76_RS24580 -2.1 -4.7 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS09335 -2.1 -1.1 baseplate assembly protein W compare
BWI76_RS00875 -2.1 -5.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS24605 -2.1 -5.1 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS21350 -2.1 -1.6 anti-RNA polymerase sigma factor SigE compare
BWI76_RS16425 -2.0 -3.9 hypothetical protein compare
BWI76_RS07465 -2.0 -1.1 TetR family transcriptional regulator compare
BWI76_RS01125 -2.0 -5.5 4-alpha-L-fucosyltransferase compare
BWI76_RS25065 -2.0 -3.1 polyribonucleotide nucleotidyltransferase compare
BWI76_RS24740 -2.0 -2.0 GntR family transcriptional regulator compare
BWI76_RS12265 -2.0 -7.1 hypothetical protein compare
BWI76_RS01135 -2.0 -3.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS00240 -2.0 -1.2 FMN-binding protein MioC compare
BWI76_RS26670 -2.0 -7.4 two-component sensor histidine kinase compare
BWI76_RS15110 -2.0 -5.7 putative excinuclease ABC subunit A compare
BWI76_RS25700 -2.0 -3.5 heavy metal-responsive transcriptional regulator compare
BWI76_RS22755 -1.9 -3.9 phosphoadenosine phosphosulfate reductase compare
BWI76_RS19700 -1.9 -2.4 deoxyribonuclease IV compare
BWI76_RS02735 -1.9 -3.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS01800 -1.9 -2.2 glucose-6-phosphate isomerase compare
BWI76_RS00720 -1.9 -1.6 DNA-binding response regulator compare
BWI76_RS25060 -1.9 -5.3 lipoprotein NlpI compare
BWI76_RS12205 -1.9 -3.4 hypothetical protein compare
BWI76_RS08020 -1.9 -5.9 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS19010 -1.8 -2.4 polysaccharide pyruvyl transferase yvff compare
BWI76_RS00345 -1.8 -3.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS11275 -1.8 -5.9 sensor protein PhoQ compare
BWI76_RS03295 -1.8 -1.5 transposase compare
BWI76_RS09825 -1.8 -4.2 envelope biogenesis factor ElyC compare
BWI76_RS22690 -1.8 -2.0 adenylyl-sulfate kinase compare
BWI76_RS26470 -1.7 -3.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS26425 -1.7 -5.0 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS07185 -1.7 -1.1 hypothetical protein compare
BWI76_RS21250 -1.7 -4.9 two-component system response regulator GlrR compare
BWI76_RS08385 -1.7 -2.0 citrate (Si)-synthase compare
BWI76_RS12040 -1.7 -1.6 hypothetical protein compare
BWI76_RS01220 -1.7 -3.6 DNA-dependent helicase II compare
BWI76_RS02530 -1.7 -1.1 tRNA dimethylallyltransferase compare
BWI76_RS21580 -1.6 -0.8 SsrA-binding protein compare
BWI76_RS00355 -1.6 -1.8 DNA polymerase I compare
BWI76_RS08205 -1.6 -4.1 DNA-binding transcriptional dual regulator NagC compare
BWI76_RS11430 -1.6 -1.1 lipoprotein compare
BWI76_RS15115 -1.6 -1.1 MFS transporter compare
BWI76_RS08405 -1.6 -3.1 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS15635 -1.6 -4.7 hypothetical protein compare
BWI76_RS06525 -1.6 -4.4 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS21370 -1.6 -0.9 ATP-dependent RNA helicase SrmB compare
BWI76_RS23920 -1.6 -1.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS06680 -1.6 -1.2 hypothetical protein compare
BWI76_RS15535 -1.6 -3.1 hypothetical protein compare
BWI76_RS10745 -1.6 -1.0 hypothetical protein compare
BWI76_RS12270 -1.6 -4.0 hypothetical protein compare
BWI76_RS00715 -1.6 -1.0 two-component sensor histidine kinase compare
BWI76_RS21660 -1.5 -1.5 antirestriction protein compare
BWI76_RS26095 -1.5 -0.6 shikimate kinase compare
BWI76_RS01090 -1.5 -4.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS02340 -1.5 -3.6 membrane protein FxsA compare
BWI76_RS21310 -1.5 -0.7 DNA repair protein RecO compare
BWI76_RS10935 -1.5 -4.6 glucan biosynthesis glucosyltransferase H compare
BWI76_RS21780 -1.5 -3.6 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS04305 -1.5 -1.1 molecular chaperone DnaJ compare
BWI76_RS01325 -1.5 -2.4 twin-arginine translocase subunit TatB compare
BWI76_RS13595 -1.5 -3.3 transcriptional regulator compare
BWI76_RS16200 -1.5 -1.6 NAD(P) transhydrogenase subunit beta compare
BWI76_RS09730 -1.5 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS25960 -1.5 -2.8 NUDIX hydrolase compare
BWI76_RS24850 -1.5 -4.4 DeoR family transcriptional regulator compare
BWI76_RS20380 -1.5 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS03225 -1.5 -4.2 transcriptional regulator compare
BWI76_RS21690 -1.5 -2.0 hypothetical protein compare
BWI76_RS26075 -1.4 -1.0 DNA adenine methylase compare
BWI76_RS10930 -1.4 -4.7 glucan biosynthesis protein G compare
BWI76_RS14390 -1.4 -1.5 hypothetical protein compare
BWI76_RS19935 -1.4 -1.6 hypothetical protein compare
BWI76_RS09190 -1.4 -2.2 hypothetical protein compare
BWI76_RS08605 -1.4 -1.6 phosphoglyceromutase compare
BWI76_RS12285 -1.3 -1.7 hypothetical protein compare
BWI76_RS12400 -1.3 -4.9 TetR family transcriptional regulator compare
BWI76_RS23365 -1.3 -2.5 LysR family transcriptional regulator compare
BWI76_RS25870 -1.3 -0.9 elongation factor Tu compare
BWI76_RS15740 -1.3 -3.1 HNH endonuclease compare
BWI76_RS10990 -1.3 -2.2 dihydroorotase compare
BWI76_RS27440 -1.3 -1.7 DNA helicase RecG compare
BWI76_RS19035 -1.3 -6.2 dTDP-rhamnosyl transferase compare
BWI76_RS06520 -1.3 -3.0 trigger factor compare
BWI76_RS12190 -1.3 -4.5 glycoside hydrolase family protein compare
BWI76_RS05840 -1.3 -2.4 glutamate 5-kinase compare
BWI76_RS15600 -1.3 -2.5 hypothetical protein compare
BWI76_RS15195 -1.3 -1.7 DUF4186 domain-containing protein compare
BWI76_RS14325 -1.3 -2.3 maturase compare
BWI76_RS09640 -1.3 -1.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS01185 -1.3 -0.8 adenylate cyclase compare
BWI76_RS12245 -1.3 -5.6 hypothetical protein compare
BWI76_RS08360 -1.3 -2.1 LamB/YcsF family protein compare
BWI76_RS20355 -1.3 -2.7 colicin V production protein compare
BWI76_RS19375 -1.3 -1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS12320 -1.3 -5.9 hypothetical protein compare
BWI76_RS12300 -1.3 -3.7 hypothetical protein compare
BWI76_RS19905 -1.3 -2.8 OmpK36 porin compare
BWI76_RS12295 -1.2 -6.7 hypothetical protein compare
BWI76_RS24100 -1.2 -3.1 YggS family pyridoxal phosphate enzyme compare
BWI76_RS04465 -1.2 -3.1 carbamoyl-phosphate synthase small subunit compare
BWI76_RS22805 -1.2 -5.3 GTP diphosphokinase compare
BWI76_RS00180 -1.2 -0.5 F0F1 ATP synthase subunit epsilon compare
BWI76_RS09200 -1.2 -4.0 hypothetical protein compare
BWI76_RS25280 -1.2 -1.0 RNase adaptor protein RapZ compare
BWI76_RS16250 -1.2 -3.0 DNA-binding response regulator compare
BWI76_RS01200 -1.2 -0.8 diaminopimelate epimerase compare
BWI76_RS01105 -1.2 -2.8 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS00140 -1.2 -1.2 phosphate transport system regulator PhoU compare
BWI76_RS24340 -1.2 -4.1 two-component sensor histidine kinase compare
BWI76_RS15575 -1.2 -4.0 hypothetical protein compare
BWI76_RS21450 -1.2 -1.0 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS08425 -1.2 -3.3 succinyl-CoA ligase subunit beta compare
BWI76_RS27165 -1.2 -3.1 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS26200 -1.2 -5.7 starch synthase compare
BWI76_RS15435 -1.2 -1.0 hypothetical protein compare
BWI76_RS22765 -1.2 -5.2 sulfite reductase subunit alpha compare
BWI76_RS09910 -1.2 -8.1 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS23490 -1.2 -3.2 fimbrial protein compare
BWI76_RS02725 -1.2 -0.8 HxlR family transcriptional regulator compare
BWI76_RS21260 -1.2 -3.3 two-component sensor histidine kinase compare
BWI76_RS02550 -1.2 -3.9 protease modulator HflC compare
BWI76_RS01385 -1.2 -1.6 potassium transporter compare
BWI76_RS10350 -1.2 -4.5 EamA family transporter compare
BWI76_RS13545 -1.2 -1.0 N-acetyltransferase compare
BWI76_RS01870 -1.2 -3.3 diacylglycerol kinase compare
BWI76_RS19730 -1.1 -3.0 1-phosphofructokinase compare
BWI76_RS01170 -1.1 -2.2 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS20440 -1.1 -2.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS15225 -1.1 -4.0 DeoR family transcriptional regulator compare
BWI76_RS22625 -1.1 -1.0 transcriptional regulator compare
BWI76_RS05915 -1.1 -1.9 helix-turn-helix transcriptional regulator compare
BWI76_RS12200 -1.1 -2.0 hypothetical protein compare
BWI76_RS05790 -1.1 -1.2 phage DNA-binding protein compare
BWI76_RS12335 -1.1 -4.6 hypothetical protein compare
BWI76_RS19685 -1.1 -2.8 lysine transporter compare
BWI76_RS08720 -1.1 -1.3 imidazolonepropionase compare
BWI76_RS12250 -1.1 -6.3 terminase compare
BWI76_RS05570 -1.1 -0.9 hypothetical protein compare
BWI76_RS09625 -1.1 -0.9 hypothetical protein compare
BWI76_RS14320 -1.1 -1.2 hypothetical protein compare
BWI76_RS09645 -1.1 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS12340 -1.1 -2.8 molecular chaperone Tir compare
BWI76_RS12220 -1.1 -6.1 hypothetical protein compare
BWI76_RS25920 -1.1 -0.9 peptidylprolyl isomerase compare
BWI76_RS27475 -1.1 -4.5 regulatory protein GntR family protein compare
BWI76_RS20475 -1.1 -2.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS06730 -1.1 -1.6 lac repressor compare
BWI76_RS19040 -1.1 -4.1 hypothetical protein compare
BWI76_RS08980 -1.1 -1.0 DNA starvation/stationary phase protection protein compare
BWI76_RS27435 -1.0 -4.6 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH compare
BWI76_RS15760 -1.0 -1.4 hypothetical protein compare
BWI76_RS02545 -1.0 -3.5 protease modulator HflK compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL across organisms