Experiment set13IT062 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS01115 -6.2 -3.1 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS01095 -5.9 -3.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS26460 -5.0 -4.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS05120 -5.0 -8.3 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS26455 -4.7 -2.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS19840 -4.5 -1.3 hypothetical protein compare
BWI76_RS08525 -4.5 -2.2 colicin transporter compare
BWI76_RS05015 -4.2 -2.5 transcriptional regulator compare
BWI76_RS17975 -4.2 -4.6 tail-specific protease compare
BWI76_RS11300 -4.0 -1.2 cupin compare
BWI76_RS08535 -4.0 -2.0 translocation protein TolB compare
BWI76_RS23265 -4.0 -2.3 hypothetical protein compare
BWI76_RS14320 -3.9 -2.5 hypothetical protein compare
BWI76_RS09760 -3.9 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21070 -3.8 -1.9 outer membrane protein assembly factor BamB compare
BWI76_RS25065 -3.6 -4.7 polyribonucleotide nucleotidyltransferase compare
BWI76_RS21350 -3.6 -2.9 anti-RNA polymerase sigma factor SigE compare
BWI76_RS21345 -3.5 -3.0 sigma-E factor regulatory protein RseB compare
BWI76_RS25335 -3.5 -1.7 stringent starvation protein A compare
BWI76_RS01110 -3.5 -6.0 TDP-fucosamine acetyltransferase compare
BWI76_RS20380 -3.4 -1.0 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS11155 -3.4 -2.8 penicillin-binding protein activator LpoB compare
BWI76_RS08520 -3.4 -1.9 colicin transporter TolQ compare
BWI76_RS17980 -3.3 -3.4 RNA chaperone ProQ compare
BWI76_RS19770 -3.3 -1.3 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS06535 -3.2 -2.2 endopeptidase La compare
BWI76_RS01125 -3.2 -7.1 4-alpha-L-fucosyltransferase compare
BWI76_RS21075 -3.1 -1.5 membrane protein compare
BWI76_RS00875 -3.1 -6.1 DNA-binding transcriptional regulator FabR compare
BWI76_RS01080 -3.1 -9.9 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS05260 -3.0 -1.2 chaperone compare
BWI76_RS26670 -2.9 -9.0 two-component sensor histidine kinase compare
BWI76_RS15825 -2.8 -1.2 hypothetical protein compare
BWI76_RS04305 -2.8 -1.4 molecular chaperone DnaJ compare
BWI76_RS25060 -2.8 -5.5 lipoprotein NlpI compare
BWI76_RS09970 -2.8 -1.0 porin OmpA compare
BWI76_RS10935 -2.8 -5.4 glucan biosynthesis glucosyltransferase H compare
BWI76_RS22755 -2.7 -5.0 phosphoadenosine phosphosulfate reductase compare
BWI76_RS01135 -2.6 -6.4 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS08530 -2.6 -1.5 protein TolA compare
BWI76_RS23920 -2.6 -2.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04715 -2.6 -2.5 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS08210 -2.6 -1.0 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS07465 -2.6 -0.9 TetR family transcriptional regulator compare
BWI76_RS26390 -2.5 -9.1 cell division protein FtsX compare
BWI76_RS01210 -2.5 -1.2 tyrosine recombinase XerC compare
BWI76_RS08020 -2.4 -6.6 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS26440 -2.4 -1.0 hypothetical protein compare
BWI76_RS26395 -2.4 -7.2 cell division protein FtsE compare
BWI76_RS24900 -2.3 -1.3 DeoR family transcriptional regulator compare
BWI76_RS16965 -2.3 -2.6 murein lipoprotein compare
BWI76_RS17805 -2.3 -1.7 membrane protein compare
BWI76_RS24580 -2.3 -4.5 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS05450 -2.3 -0.8 ribonuclease HI compare
BWI76_RS27440 -2.2 -1.5 DNA helicase RecG compare
BWI76_RS02780 -2.2 -12.0 translocation and assembly module TamB compare
BWI76_RS21660 -2.2 -1.8 antirestriction protein compare
BWI76_RS01220 -2.2 -4.6 DNA-dependent helicase II compare
BWI76_RS00400 -2.2 -1.1 glutamine synthetase compare
BWI76_RS17720 -2.2 -0.6 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS09755 -2.2 -4.1 phosphoserine transaminase compare
BWI76_RS04645 -2.1 -3.7 3-dehydroquinase compare
BWI76_RS21370 -2.1 -0.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS24605 -2.1 -5.1 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS02340 -2.1 -4.0 membrane protein FxsA compare
BWI76_RS26730 -2.1 -5.6 inner membrane protein YhjD compare
BWI76_RS23830 -2.0 -4.8 hypothetical protein compare
BWI76_RS15110 -2.0 -5.8 putative excinuclease ABC subunit A compare
BWI76_RS11275 -1.9 -5.7 sensor protein PhoQ compare
BWI76_RS09645 -1.9 -0.9 thioredoxin-disulfide reductase compare
BWI76_RS02775 -1.9 -5.5 outer membrane protein assembly factor compare
BWI76_RS26470 -1.8 -4.0 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS20360 -1.8 -0.7 cell division protein DedD compare
BWI76_RS19920 -1.8 -9.0 hybrid sensor histidine kinase/response regulator compare
BWI76_RS25700 -1.8 -4.7 heavy metal-responsive transcriptional regulator compare
BWI76_RS19905 -1.8 -2.9 OmpK36 porin compare
BWI76_RS03225 -1.8 -6.2 transcriptional regulator compare
BWI76_RS04160 -1.8 -2.8 phosphoserine phosphatase compare
BWI76_RS21260 -1.8 -6.2 two-component sensor histidine kinase compare
BWI76_RS01090 -1.8 -3.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS02550 -1.8 -5.4 protease modulator HflC compare
BWI76_RS22420 -1.7 -2.4 LacI family transcriptional regulator compare
BWI76_RS19035 -1.7 -7.7 dTDP-rhamnosyl transferase compare
BWI76_RS12495 -1.7 -1.1 2-Cys peroxiredoxin compare
BWI76_RS02735 -1.7 -2.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS16425 -1.7 -2.0 hypothetical protein compare
BWI76_RS01350 -1.7 -0.7 NAD(P)H-flavin reductase compare
BWI76_RS08405 -1.7 -2.6 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS02680 -1.7 -2.0 EamA family transporter compare
BWI76_RS00355 -1.7 -1.7 DNA polymerase I compare
BWI76_RS01800 -1.7 -2.4 glucose-6-phosphate isomerase compare
BWI76_RS25280 -1.7 -1.1 RNase adaptor protein RapZ compare
BWI76_RS19670 -1.6 -2.3 S-formylglutathione hydrolase compare
BWI76_RS02530 -1.6 -1.0 tRNA dimethylallyltransferase compare
BWI76_RS24600 -1.6 -2.0 dihydroxyacetone kinase compare
BWI76_RS13915 -1.6 -6.4 magnesium transport protein MgtC compare
BWI76_RS21235 -1.6 -0.6 hypothetical protein compare
BWI76_RS19910 -1.6 -7.5 phosphotransferase RcsD compare
BWI76_RS08040 -1.6 -2.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS21310 -1.6 -0.7 DNA repair protein RecO compare
BWI76_RS15535 -1.6 -3.2 hypothetical protein compare
BWI76_RS12070 -1.5 -1.2 hypothetical protein compare
BWI76_RS15835 -1.5 -1.8 hypothetical protein compare
BWI76_RS10930 -1.5 -4.9 glucan biosynthesis protein G compare
BWI76_RS26095 -1.5 -0.6 shikimate kinase compare
BWI76_RS13595 -1.5 -3.2 transcriptional regulator compare
BWI76_RS09730 -1.5 -0.8 pyruvate formate lyase 1-activating protein compare
BWI76_RS24850 -1.5 -5.1 DeoR family transcriptional regulator compare
BWI76_RS20280 -1.5 -2.8 phosphodiesterase compare
BWI76_RS12040 -1.5 -1.5 hypothetical protein compare
BWI76_RS07510 -1.5 -1.5 hypothetical protein compare
BWI76_RS22805 -1.5 -6.5 GTP diphosphokinase compare
BWI76_RS05680 -1.5 -4.3 LacI family transcriptional regulator compare
BWI76_RS21250 -1.5 -3.7 two-component system response regulator GlrR compare
BWI76_RS27820 -1.4 -0.5 ilvB operon leader peptide IvbL compare
BWI76_RS15115 -1.4 -1.9 MFS transporter compare
BWI76_RS24740 -1.4 -2.4 GntR family transcriptional regulator compare
BWI76_RS01105 -1.4 -2.8 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS25960 -1.4 -2.5 NUDIX hydrolase compare
BWI76_RS25920 -1.4 -1.0 peptidylprolyl isomerase compare
BWI76_RS12265 -1.4 -2.8 hypothetical protein compare
BWI76_RS12090 -1.4 -1.8 HNH endonuclease compare
BWI76_RS12225 -1.4 -2.0 hypothetical protein compare
BWI76_RS26665 -1.4 -1.4 DNA-binding response regulator compare
BWI76_RS21780 -1.4 -3.4 S-(hydroxymethyl)glutathione synthase compare
BWI76_RS27780 -1.4 -0.9 hypothetical protein compare
BWI76_RS19010 -1.3 -2.2 polysaccharide pyruvyl transferase yvff compare
BWI76_RS16230 -1.3 -1.3 dihydromonapterin reductase compare
BWI76_RS09200 -1.3 -5.0 hypothetical protein compare
BWI76_RS27305 -1.3 -6.7 glycosyl transferase compare
BWI76_RS17190 -1.3 -1.5 TonB system transport protein TonB compare
BWI76_RS27165 -1.3 -2.7 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS18815 -1.3 -1.3 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS09825 -1.3 -5.2 envelope biogenesis factor ElyC compare
BWI76_RS12295 -1.3 -4.2 hypothetical protein compare
BWI76_RS15635 -1.3 -3.9 hypothetical protein compare
BWI76_RS25285 -1.3 -0.9 HPr family phosphocarrier protein compare
BWI76_RS21690 -1.3 -1.9 hypothetical protein compare
BWI76_RS06525 -1.3 -2.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS12195 -1.3 -2.7 hypothetical protein compare
BWI76_RS12205 -1.3 -2.9 hypothetical protein compare
BWI76_RS12240 -1.3 -4.4 terminase small subunit compare
BWI76_RS12270 -1.3 -2.2 hypothetical protein compare
BWI76_RS18390 -1.3 -2.0 hypothetical protein compare
BWI76_RS01870 -1.3 -1.9 diacylglycerol kinase compare
BWI76_RS12230 -1.3 -5.6 hypothetical protein compare
BWI76_RS23365 -1.3 -2.7 LysR family transcriptional regulator compare
BWI76_RS04465 -1.3 -3.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS14300 -1.3 -1.5 hypothetical protein compare
BWI76_RS27075 -1.3 -5.3 IclR family transcriptional regulator compare
BWI76_RS19040 -1.3 -5.1 hypothetical protein compare
BWI76_RS21100 -1.3 -1.8 nucleoside-diphosphate kinase compare
BWI76_RS00180 -1.2 -0.5 F0F1 ATP synthase subunit epsilon compare
BWI76_RS01185 -1.2 -0.8 adenylate cyclase compare
BWI76_RS23490 -1.2 -4.9 fimbrial protein compare
BWI76_RS24500 -1.2 -2.3 urease subunit gamma compare
BWI76_RS04530 -1.2 -1.0 peptidylprolyl isomerase SurA compare
BWI76_RS04470 -1.2 -5.1 carbamoyl phosphate synthase large subunit compare
BWI76_RS06520 -1.2 -3.2 trigger factor compare
BWI76_RS11255 -1.2 -1.7 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS09910 -1.2 -8.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS24340 -1.2 -4.4 two-component sensor histidine kinase compare
BWI76_RS05350 -1.2 -7.5 Rcs stress response system protein RcsF compare
BWI76_RS11190 -1.2 -1.4 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS26425 -1.2 -4.5 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS22950 -1.2 -1.6 membrane protein compare
BWI76_RS23285 -1.2 -1.6 hypothetical protein compare
BWI76_RS09190 -1.2 -2.1 hypothetical protein compare
BWI76_RS19700 -1.2 -1.4 deoxyribonuclease IV compare
BWI76_RS00720 -1.2 -1.6 DNA-binding response regulator compare
BWI76_RS14980 -1.2 -1.7 hypothetical protein compare
BWI76_RS01200 -1.2 -0.7 diaminopimelate epimerase compare
BWI76_RS24885 -1.2 -0.7 PTS galactitol transporter subunit IIB compare
BWI76_RS26075 -1.2 -1.1 DNA adenine methylase compare
BWI76_RS08205 -1.2 -3.1 DNA-binding transcriptional dual regulator NagC compare
BWI76_RS15690 -1.2 -2.6 hypothetical protein compare
BWI76_RS00345 -1.2 -2.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS15060 -1.2 -2.6 MarR family transcriptional regulator compare
BWI76_RS27475 -1.2 -5.0 regulatory protein GntR family protein compare
BWI76_RS24400 -1.2 -2.8 outer membrane channel protein TolC compare
BWI76_RS12275 -1.2 -5.6 hypothetical protein compare
BWI76_RS01885 -1.2 -1.2 CsbD family protein compare
BWI76_RS20150 -1.1 -1.0 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS12305 -1.1 -2.9 hypothetical protein compare
BWI76_RS24595 -1.1 -2.0 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS24275 -1.1 -1.7 biopolymer transport protein ExbD compare
BWI76_RS15225 -1.1 -4.4 DeoR family transcriptional regulator compare
BWI76_RS22690 -1.1 -1.5 adenylyl-sulfate kinase compare
BWI76_RS12220 -1.1 -4.9 hypothetical protein compare
BWI76_RS13435 -1.1 -1.1 hypothetical protein compare
BWI76_RS06530 -1.1 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS03080 -1.1 -2.9 (Fe-S)-cluster assembly protein compare
BWI76_RS12320 -1.1 -4.8 hypothetical protein compare
BWI76_RS14325 -1.1 -2.5 maturase compare
BWI76_RS27915 -1.1 -1.3 YceK/YidQ family lipoprotein compare
BWI76_RS15840 -1.1 -2.5 prophage protein compare
BWI76_RS02745 -1.1 -1.0 hypothetical protein compare
BWI76_RS25070 -1.1 -0.9 hypothetical protein compare
BWI76_RS21410 -1.1 -2.6 lipoprotein compare
BWI76_RS19685 -1.1 -2.6 lysine transporter compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms