Experiment set13IT062 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS27455 +1.7 4.2 DUF805 domain-containing protein compare
BWI76_RS18605 +1.4 1.8 oxidoreductase molybdopterin-binding protein compare
BWI76_RS11335 +1.4 2.1 tautomerase compare
BWI76_RS17300 +1.4 1.3 tRNA-Tyr compare
BWI76_RS11700 +1.2 1.7 hypothetical protein compare
BWI76_RS13955 +1.2 2.1 hypothetical protein compare
BWI76_RS11840 +1.1 2.4 tryptophan synthase subunit alpha compare
BWI76_RS11525 +1.1 2.7 HNH endonuclease compare
BWI76_RS01585 +1.0 7.7 transcriptional regulator compare
BWI76_RS17860 +1.0 1.5 YoaH family protein compare
BWI76_RS11815 +1.0 1.4 hypothetical protein compare
BWI76_RS16485 +1.0 1.0 ribonuclease T compare
BWI76_RS01995 +1.0 1.6 AraC family transcriptional regulator compare
BWI76_RS19865 +1.0 2.5 ecotin compare
BWI76_RS07255 +1.0 1.5 hypothetical protein compare
BWI76_RS13420 +1.0 1.6 ABC transporter permease compare
BWI76_RS05075 +1.0 0.5 type II secretion system protein GspG compare
BWI76_RS26065 +1.0 1.8 phosphoglycolate phosphatase compare
BWI76_RS08645 +1.0 2.8 molybdate ABC transporter substrate-binding protein compare
BWI76_RS09490 +0.9 2.5 DNA-binding response regulator compare
BWI76_RS16515 +0.9 1.2 LysR family transcriptional regulator compare
BWI76_RS22935 +0.9 0.9 L-fucose mutarotase compare
BWI76_RS09085 +0.9 4.0 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS24810 +0.9 2.2 hypothetical protein compare
BWI76_RS13250 +0.9 1.4 cytochrome b561 compare
BWI76_RS03665 +0.9 2.0 ABC transporter ATP-binding protein compare
BWI76_RS01190 +0.9 1.2 iron donor protein CyaY compare
BWI76_RS11780 +0.9 2.0 2-deoxyglucose-6-phosphatase compare
BWI76_RS19235 +0.9 2.0 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS15135 +0.8 3.5 hypothetical protein compare
BWI76_RS12665 +0.8 2.2 hypothetical protein compare
BWI76_RS04060 +0.8 2.1 hypothetical protein compare
BWI76_RS11125 +0.8 1.4 metal-dependent hydrolase compare
BWI76_RS14840 +0.8 2.5 hypothetical protein compare
BWI76_RS07165 +0.8 2.7 hypothetical protein compare
BWI76_RS16095 +0.8 2.6 thiamine biosynthesis protein ApbE compare
BWI76_RS06340 +0.8 2.0 hypothetical protein compare
BWI76_RS21140 +0.8 0.9 molecular chaperone HscA compare
BWI76_RS11610 +0.8 0.8 glutamate dehydrogenase compare
BWI76_RS11185 +0.8 2.2 ligand-gated channel protein compare
BWI76_RS13980 +0.8 1.6 hypothetical protein compare
BWI76_RS25855 +0.8 1.6 bacterioferritin compare
BWI76_RS15960 +0.8 1.6 LysR family transcriptional regulator compare
BWI76_RS13170 +0.8 1.0 methyltransferase compare
BWI76_RS07475 +0.8 1.4 DNA-binding transcriptional regulator RamA compare
BWI76_RS09520 +0.8 1.8 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS12860 +0.8 1.4 hypothetical protein compare
BWI76_RS21945 +0.8 2.1 LysR family transcriptional regulator compare
BWI76_RS18830 +0.8 3.1 protein NifY compare
BWI76_RS21395 +0.8 1.9 DTW domain-containing protein compare
BWI76_RS18610 +0.8 2.5 transcriptional regulator LysR compare
BWI76_RS24945 +0.8 1.2 glutamine amidotransferase compare
BWI76_RS16115 +0.8 3.5 fumarate hydratase compare
BWI76_RS11710 +0.8 2.2 nucleotide excision repair endonuclease compare
BWI76_RS16000 +0.8 1.3 multidrug transporter subunit MdtI compare
BWI76_RS16015 +0.8 3.2 pheromone autoinducer 2 transporter compare
BWI76_RS09050 +0.7 1.6 MFS transporter compare
BWI76_RS18725 +0.7 2.6 hypothetical protein compare
BWI76_RS23185 +0.7 1.1 propanediol utilization: polyhedral bodies pduT compare
BWI76_RS12585 +0.7 3.6 transcriptional regulator compare
BWI76_RS11430 +0.7 0.9 lipoprotein compare
BWI76_RS01565 +0.7 1.4 NADH pyrophosphatase compare
BWI76_RS27395 +0.7 4.1 hypothetical protein compare
BWI76_RS24825 +0.7 1.8 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS22185 +0.7 2.2 hypothetical protein compare
BWI76_RS22215 +0.7 3.1 PTS sorbitol transporter subunit IIC compare
BWI76_RS17210 +0.7 1.9 dsDNA-mimic protein compare
BWI76_RS05895 +0.7 2.6 phosphonate ABC transporter, permease protein PhnE compare
BWI76_RS12630 +0.7 4.1 regulatory protein, LysR:LysR, substrate-binding protein compare
BWI76_RS16170 +0.7 1.6 amidohydrolase compare
BWI76_RS15120 +0.7 1.8 hypothetical protein compare
BWI76_RS00480 +0.7 1.2 hypothetical protein compare
BWI76_RS09080 +0.7 2.0 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS09065 +0.7 2.3 sugar phosphatase SupH compare
BWI76_RS19330 +0.7 0.7 HAD family hydrolase compare
BWI76_RS21275 +0.7 3.2 lytic transglycosylase F compare
BWI76_RS06745 +0.7 1.9 N-acetyltransferase GCN5 compare
BWI76_RS15845 +0.7 0.6 hypothetical protein compare
BWI76_RS13300 +0.7 2.9 carboxylesterase compare
BWI76_RS08800 +0.7 1.8 phosphoethanolamine transferase EptA compare
BWI76_RS13090 +0.7 1.8 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS13480 +0.7 0.8 XRE family transcriptional regulator compare
BWI76_RS20040 +0.7 3.0 tricarboxylic transport membrane protein compare
BWI76_RS16270 +0.7 4.1 fumarate hydratase, class II compare
BWI76_RS15350 +0.7 0.7 hypothetical protein compare
BWI76_RS05970 +0.7 1.6 hypothetical protein compare
BWI76_RS00475 +0.7 3.1 sulfurtransferase FdhD compare
BWI76_RS04700 +0.7 1.2 acetolactate synthase small subunit compare
BWI76_RS11390 +0.6 0.9 iron dicitrate transport regulator FecR compare
BWI76_RS20145 +0.6 0.9 NADH-quinone oxidoreductase subunit K compare
BWI76_RS11825 +0.6 1.7 LysR family transcriptional regulator compare
BWI76_RS15030 +0.6 2.0 ABC transporter compare
BWI76_RS24040 +0.6 2.2 hypothetical protein compare
BWI76_RS21795 +0.6 1.9 EAL domain-containing protein compare
BWI76_RS15295 +0.6 1.2 MDR efflux pump AcrAB transcriptional activator MarA compare
BWI76_RS11000 +0.6 2.0 glutaredoxin 2 compare
BWI76_RS16025 +0.6 1.2 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS16655 +0.6 3.4 CatA-like O-acetyltransferase compare
BWI76_RS14965 +0.6 2.7 AraC family transcriptional regulator compare
BWI76_RS16135 +0.6 2.8 acetyl-CoA acetyltransferase compare
BWI76_RS26480 +0.6 2.4 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS16390 +0.6 2.9 dipeptide/tripeptide permease A compare
BWI76_RS14030 +0.6 2.1 ABC transporter permease compare
BWI76_RS25915 +0.6 1.2 protein SlyX compare
BWI76_RS17985 +0.6 2.6 hypothetical protein compare
BWI76_RS16090 +0.6 1.5 two-component system response regulator DcuR compare
BWI76_RS14970 +0.6 0.9 pyrroline-5-carboxylate reductase compare
BWI76_RS02180 +0.6 1.0 hypothetical protein compare
BWI76_RS27645 +0.6 2.5 ADP-ribose pyrophosphatase compare
BWI76_RS03835 +0.6 1.9 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS26505 +0.6 1.3 nickel ABC transporter permease subunit NikB compare
BWI76_RS16660 +0.6 1.3 SfnB family sulfur acquisition oxidoreductase compare
BWI76_RS27015 +0.6 2.3 hypothetical protein compare
BWI76_RS21040 +0.6 1.8 peptidase M4 compare
BWI76_RS02800 +0.6 2.2 ABC transporter compare
BWI76_RS22695 +0.6 1.6 sulfate adenylyltransferase compare
BWI76_RS08315 +0.6 1.6 K+-transporting ATPase subunit B compare
BWI76_RS12545 +0.6 1.2 hypothetical protein compare
BWI76_RS22090 +0.6 0.9 transcriptional regulator compare
BWI76_RS01285 +0.6 1.7 amino acid ABC transporter substrate-binding protein compare
BWI76_RS21380 +0.6 1.2 uracil-DNA glycosylase compare
BWI76_RS20635 +0.6 2.0 sulfate transporter CysZ compare
BWI76_RS02850 +0.6 2.5 metalloprotease PmbA compare
BWI76_RS03045 +0.6 1.1 hypothetical protein compare
BWI76_RS00290 +0.6 2.9 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS20560 +0.6 2.0 hypothetical protein compare
BWI76_RS11240 +0.6 2.0 spermidine/putrescine ABC transporter substrate-binding protein PotD compare
BWI76_RS15080 +0.6 4.4 hypothetical protein compare
BWI76_RS02820 +0.6 3.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BWI76_RS20465 +0.6 2.2 hypothetical protein compare
BWI76_RS22315 +0.6 1.2 formate hydrogenlyase complex iron-sulfur subunit compare
BWI76_RS25220 +0.6 1.5 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS22700 +0.6 1.6 sulfate adenylyltransferase subunit 2 compare
BWI76_RS21185 +0.6 2.4 hypothetical protein compare
BWI76_RS20965 +0.6 2.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS06335 +0.6 1.3 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS00470 +0.6 2.6 sulfate ABC transporter substrate-binding protein compare
BWI76_RS16330 +0.6 1.1 oxidoreductase compare
BWI76_RS08815 +0.6 2.6 cyclic pyranopterin phosphate synthase compare
BWI76_RS07765 +0.5 0.7 thioesterase compare
BWI76_RS00710 +0.5 0.8 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS15220 +0.5 1.8 L-lactate dehydrogenase compare
BWI76_RS18125 +0.5 1.5 murein DD-endopeptidase MepM compare
BWI76_RS02195 +0.5 2.6 alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase compare
BWI76_RS22890 +0.5 1.9 5,10-methylenetetrahydromethanopterin reductase compare
BWI76_RS26285 +0.5 1.0 glycerophosphodiester phosphodiesterase compare
BWI76_RS24215 +0.5 2.0 LysR family transcriptional regulator compare
BWI76_RS23510 +0.5 1.6 transcriptional regulator compare
BWI76_RS11770 +0.5 1.5 hypothetical protein compare
BWI76_RS22470 +0.5 1.7 transporter permease compare
BWI76_RS09530 +0.5 0.6 hypothetical protein compare
BWI76_RS11635 +0.5 0.8 ABC transporter compare
BWI76_RS04275 +0.5 2.2 molybdopterin adenylyltransferase compare
BWI76_RS01890 +0.5 1.4 transcriptional regulator Zur compare
BWI76_RS04110 +0.5 2.0 DUF1328 domain-containing protein compare
BWI76_RS04615 +0.5 2.5 thiamine transporter substrate binding subunit compare
BWI76_RS25485 +0.5 0.9 septum formation protein Maf compare
BWI76_RS12480 +0.5 2.3 TIGR01620 family protein compare
BWI76_RS26030 +0.5 2.1 cytosine deaminase compare
BWI76_RS03610 +0.5 1.9 hypothetical protein compare
BWI76_RS06400 +0.5 0.7 oxidative-stress-resistance chaperone compare
BWI76_RS16915 +0.5 1.7 alpha/beta hydrolase fold protein compare
BWI76_RS26015 +0.5 1.2 DUF2559 domain-containing protein compare
BWI76_RS11855 +0.5 2.0 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS15050 +0.5 1.4 sugar transporter compare
BWI76_RS11750 +0.5 1.4 chitooligosaccharide deacetylase compare
BWI76_RS12440 +0.5 2.3 MFS transporter compare
BWI76_RS16160 +0.5 1.2 LysR family transcriptional regulator compare
BWI76_RS19690 +0.5 0.7 LysR family transcriptional regulator compare
BWI76_RS02925 +0.5 2.4 type IV secretion protein Rhs compare
BWI76_RS24060 +0.5 1.7 SprT family protein compare
BWI76_RS20035 +0.5 1.2 hypothetical protein compare
BWI76_RS09925 +0.5 1.6 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase compare
BWI76_RS23570 +0.5 2.9 fimbrial protein compare
BWI76_RS06175 +0.5 0.9 DUF188 domain-containing protein compare
BWI76_RS17155 +0.5 1.0 hypothetical protein compare
BWI76_RS18745 +0.5 1.8 adenosylhomocysteinase compare
BWI76_RS10470 +0.5 1.3 iron ABC transporter substrate-binding protein compare
BWI76_RS12680 +0.5 1.4 oxidoreductase compare
BWI76_RS27045 +0.5 2.2 XylR family transcriptional regulator compare
BWI76_RS13590 +0.5 0.6 hypothetical protein compare
BWI76_RS22620 +0.5 1.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BWI76_RS20390 +0.5 1.9 erythronate-4-phosphate dehydrogenase compare
BWI76_RS14240 +0.5 1.2 thiol reductase thioredoxin compare
BWI76_RS13215 +0.5 0.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS15285 +0.5 1.1 stress protection protein MarC compare
BWI76_RS16315 +0.5 0.5 SirA-like protein compare
BWI76_RS23250 +0.5 1.3 hypothetical protein compare
BWI76_RS00330 +0.5 3.3 molybdenum cofactor guanylyltransferase compare
BWI76_RS20970 +0.5 0.9 phosphoribosylglycinamide formyltransferase compare
BWI76_RS03760 +0.5 2.2 hypothetical protein compare
BWI76_RS00255 +0.5 3.0 hypothetical protein compare
BWI76_RS06800 +0.5 0.8 DUF2496 domain-containing protein compare
BWI76_RS02225 +0.5 1.0 phosphonate C-P lyase system protein PhnG compare
BWI76_RS23875 +0.5 1.3 glycine cleavage system protein H compare
BWI76_RS23125 +0.5 0.8 propanediol dehydratase small subunit compare
BWI76_RS07735 +0.5 1.8 MFS transporter compare
BWI76_RS19375 +0.5 0.4 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS04360 +0.5 2.1 ribonucleoside hydrolase RihC compare
BWI76_RS13425 +0.5 2.4 1-pyrroline dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms