Experiment set13IT061 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 1.5 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_4071 -4.8 -3.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_43 -3.8 -3.6 Histidine permease YuiF compare
Pf6N2E2_760 -3.3 -12.3 Na+/H+ antiporter NhaB compare
Pf6N2E2_5679 -2.8 -4.5 hypothetical protein compare
Pf6N2E2_4797 -2.7 -1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4999 -2.0 -6.2 Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-) compare
Pf6N2E2_2519 -2.0 -1.4 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_5006 -1.8 -5.1 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5430 -1.8 -4.2 Transglycosylase, Slt family compare
Pf6N2E2_3569 -1.8 -1.6 hypothetical protein compare
Pf6N2E2_4612 -1.7 -3.9 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_2211 -1.7 -6.9 Hydrolase, carbon-nitrogen family compare
Pf6N2E2_4372 -1.7 -3.1 FIG00460773: hypothetical protein compare
Pf6N2E2_855 -1.7 -2.7 Transcriptional regulator, IclR family compare
Pf6N2E2_1441 -1.7 -2.3 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_1625 -1.6 -2.8 Ferric reductase (1.6.99.14) compare
Pf6N2E2_5646 -1.6 -1.8 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_5342 -1.6 -2.3 21 kDa hemolysin precursor compare
Pf6N2E2_1352 -1.6 -2.1 Cation transport ATPase compare
Pf6N2E2_3908 -1.5 -3.0 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2129 -1.5 -2.8 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2870 -1.5 -2.1 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_2681 -1.5 -1.9 3-phosphoglycerate kinase compare
Pf6N2E2_1776 -1.5 -1.9 Chemotaxis protein CheD compare
Pf6N2E2_4993 -1.5 -2.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_4773 -1.5 -1.3 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_5544 -1.5 -5.5 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_5237 -1.4 -1.8 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_2064 -1.4 -2.1 Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_5955 -1.4 -3.3 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_1287 -1.4 -1.9 Mobile element protein compare
Pf6N2E2_2510 -1.4 -2.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2985 -1.4 -2.7 Diacylglycerol kinase (EC 2.7.1.107) compare
Pf6N2E2_4367 -1.4 -1.9 hypothetical protein compare
Pf6N2E2_5746 -1.4 -1.5 Cobalamin synthase compare
Pf6N2E2_1283 -1.4 -2.0 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_4369 -1.4 -0.9 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_1032 -1.3 -1.6 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_1014 -1.3 -1.6 Nitrate/nitrite transporter compare
Pf6N2E2_3351 -1.3 -3.1 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2574 -1.3 -1.8 Flagellar synthesis regulator FleN compare
Pf6N2E2_4155 -1.3 -6.2 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3199 -1.3 -2.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_5245 -1.2 -4.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2218 -1.2 -2.7 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_42 -1.2 -2.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5536 -1.2 -1.1 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5677 -1.2 -1.7 Carbon storage regulator compare
Pf6N2E2_2825 -1.2 -4.3 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_3607 -1.2 -5.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_1315 -1.2 -1.9 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_2402 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_3003 -1.1 -1.7 Bacteriophage protein GP46 compare
Pf6N2E2_3762 -1.1 -4.1 NADP-dependent malic enzyme (EC 1.1.1.40) compare
Pf6N2E2_4974 -1.1 -5.5 DedA protein compare
Pf6N2E2_2123 -1.1 -2.2 hypothetical protein compare
Pf6N2E2_2746 -1.1 -2.9 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_5956 -1.1 -4.0 FIG004453: protein YceG like compare
Pf6N2E2_2467 -1.1 -2.8 5'-nucleotidase (EC 3.1.3.5) compare
Pf6N2E2_4054 -1.1 -1.6 Osmotically inducible protein C compare
Pf6N2E2_5078 -1.1 -1.8 Carbon starvation protein A compare
Pf6N2E2_5703 -1.1 -2.5 outer membrane protein H1 compare
Pf6N2E2_2388 -1.1 -2.2 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_4305 -1.1 -1.2 FIG00959590: hypothetical protein compare
Pf6N2E2_1551 -1.1 -2.6 Transcriptional regulator compare
Pf6N2E2_5785 -1.1 -1.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2694 -1.1 -4.6 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) compare
Pf6N2E2_3516 -1.1 -1.8 Probable transmembrane protein compare
Pf6N2E2_2284 -1.1 -1.8 Cell division inhibitor-related protein compare
Pf6N2E2_3183 -1.0 -2.2 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_4059 -1.0 -1.2 DNA-binding protein HU-alpha compare
Pf6N2E2_3617 -1.0 -2.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_3876 -1.0 -1.8 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_4636 -1.0 -4.6 periplasmic binding protein, putative compare
Pf6N2E2_2499 -1.0 -1.8 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_634 -1.0 -5.5 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Pf6N2E2_2794 -1.0 -1.0 putative membrane protein compare
Pf6N2E2_624 -1.0 -2.3 hypothetical protein PA3071 compare
Pf6N2E2_3829 -1.0 -2.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_1683 -0.9 -2.2 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_4381 -0.9 -3.2 hypothetical protein compare
Pf6N2E2_3932 -0.9 -2.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf6N2E2_1288 -0.9 -1.4 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_4162 -0.9 -2.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5049 -0.9 -1.9 acetyltransferase, GNAT family compare
Pf6N2E2_1199 -0.9 -2.2 hypothetical protein compare
Pf6N2E2_4416 -0.9 -0.8 Tyrosine recombinase XerC compare
Pf6N2E2_2128 -0.9 -3.1 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_1705 -0.9 -1.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4413 -0.9 -4.9 FIG004064: hypothetical protein compare
Pf6N2E2_2938 -0.9 -2.3 Outer membrane lipoprotein compare
Pf6N2E2_2852 -0.9 -5.0 GGDEF domain/EAL domain protein compare
Pf6N2E2_5678 -0.9 -3.1 hypothetical protein compare
Pf6N2E2_2513 -0.9 -2.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_546 -0.9 -0.7 FIG00966904: hypothetical protein compare
Pf6N2E2_2473 -0.9 -1.7 Major outer membrane lipoprotein I compare
Pf6N2E2_4594 -0.9 -1.8 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_902 -0.9 -1.7 hypothetical protein compare
Pf6N2E2_3039 -0.9 -2.8 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_621 -0.9 -2.5 TPR domain protein in aerotolerance operon compare
Pf6N2E2_905 -0.9 -3.1 FIG00962753: hypothetical protein compare
Pf6N2E2_3875 -0.8 -1.0 FIG00953324: hypothetical protein compare
Pf6N2E2_3834 -0.8 -2.8 Lipoprotein NlpD compare
Pf6N2E2_1040 -0.8 -1.1 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_4691 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_4052 -0.8 -0.9 FIG00955481: hypothetical protein compare
Pf6N2E2_2156 -0.8 -1.2 Putative polyketide synthase (Fragment) compare
Pf6N2E2_434 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_48 -0.8 -1.7 FIG00955661: hypothetical protein compare
Pf6N2E2_88 -0.8 -1.2 hypothetical protein compare
Pf6N2E2_3864 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_2007 -0.8 -2.6 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_1626 -0.8 -3.9 Putative ATP-binding component of a transport system compare
Pf6N2E2_4399 -0.8 -3.1 GGDEF domain/EAL domain protein compare
Pf6N2E2_122 -0.8 -1.3 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_2282 -0.8 -1.4 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_6070 -0.8 -1.7 FIG137877: Hypothetical protein in pyoverdin gene cluster compare
Pf6N2E2_2900 -0.8 -2.6 FIG006045: Sigma factor, ECF subfamily compare
Pf6N2E2_5704 -0.8 -1.6 Transcriptional regulatory protein PhoP compare
Pf6N2E2_1281 -0.8 -1.5 ATPase involved in DNA repair compare
Pf6N2E2_666 -0.8 -2.6 Acetoin dehydrogenase E1 component beta-subunit (EC 1.2.4.-) compare
Pf6N2E2_2413 -0.8 -0.7 FIG074102: hypothetical protein compare
Pf6N2E2_5842 -0.8 -2.0 Transcriptional regulator, TetR family compare
Pf6N2E2_4599 -0.8 -1.5 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
Pf6N2E2_1797 -0.8 -0.9 Transcriptional regulator compare
Pf6N2E2_367 -0.8 -1.9 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_5711 -0.8 -3.3 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_55 -0.8 -1.4 Probable hydrolase compare
Pf6N2E2_2586 -0.8 -0.6 Hpt domain protein compare
Pf6N2E2_5743 -0.8 -2.1 Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) compare
Pf6N2E2_2589 -0.8 -2.7 Flagellar protein FliJ compare
Pf6N2E2_4139 -0.8 -6.6 Integral membrane protein TerC compare
Pf6N2E2_942 -0.7 -1.0 Mll6465 protein compare
Pf6N2E2_4908 -0.7 -3.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5605 -0.7 -1.5 FxsA protein compare
Pf6N2E2_642 -0.7 -1.7 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system compare
Pf6N2E2_1743 -0.7 -1.1 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf6N2E2_1044 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_5560 -0.7 -1.8 Sigma-54 dependent transcriptional regulator/sensory box protein compare
Pf6N2E2_1173 -0.7 -1.4 hypothetical protein compare
Pf6N2E2_2281 -0.7 -1.3 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_3830 -0.7 -2.4 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_1972 -0.7 -1.0 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_1534 -0.7 -1.0 Probable transmembrane protein compare
Pf6N2E2_1215 -0.7 -1.2 probable membrane protein YPO2362 compare
Pf6N2E2_2124 -0.7 -1.2 Mg(2+) transport ATPase protein C compare
Pf6N2E2_3292 -0.7 -2.6 K+-dependent Na+/Ca+ exchanger related-protein compare
Pf6N2E2_4647 -0.7 -5.1 Membrane-bound lytic murein transglycosylase A precursor (EC 3.2.1.-) compare
Pf6N2E2_4516 -0.7 -4.3 Putrescine transport system permease protein PotH (TC 3.A.1.11.2) compare
Pf6N2E2_1606 -0.7 -1.9 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_2384 -0.7 -0.5 CmpX compare
Pf6N2E2_3782 -0.7 -2.9 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_1469 -0.7 -2.1 NAD-dependent formate dehydrogenase gamma subunit compare
Pf6N2E2_5093 -0.7 -5.2 ATP-dependent protease La (EC 3.4.21.53) Type II compare
Pf6N2E2_3015 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_865 -0.7 -0.9 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_3870 -0.7 -1.1 hypothetical protein compare
Pf6N2E2_3252 -0.7 -3.2 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_4083 -0.7 -2.0 hypothetical protein compare
Pf6N2E2_3783 -0.7 -2.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
Pf6N2E2_5722 -0.7 -2.7 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_5639 -0.7 -2.7 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_3397 -0.7 -1.5 Phage protein compare
Pf6N2E2_2286 -0.7 -1.4 FIG00953287: hypothetical protein compare
Pf6N2E2_5394 -0.7 -1.3 Molybdenum cofactor biosynthesis protein MoaE compare
Pf6N2E2_1031 -0.7 -1.6 Alkanesulfonates transport system permease protein compare
Pf6N2E2_5806 -0.7 -1.6 hypothetical protein compare
Pf6N2E2_620 -0.7 -2.1 BatD compare
Pf6N2E2_1083 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_2964 -0.7 -1.6 FIG006285: ICC-like protein phosphoesterase compare
Pf6N2E2_3532 -0.7 -2.3 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_625 -0.7 -1.4 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3017 -0.7 -1.9 hypothetical protein compare
Pf6N2E2_5188 -0.7 -1.5 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2459 -0.7 -1.2 Organic hydroperoxide resistance protein compare
Pf6N2E2_4949 -0.7 -4.4 Phosphatidate cytidylyltransferase (EC 2.7.7.41) compare
Pf6N2E2_4388 -0.7 -4.3 Gamma-glutamyl-putrescine oxidase (EC1.4.3.-) compare
Pf6N2E2_3947 -0.7 -1.1 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf6N2E2_4545 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_3024 -0.7 -1.6 Phage tail fibers compare
Pf6N2E2_1043 -0.7 -1.9 Transcriptional regulator, IclR family compare
Pf6N2E2_4625 -0.7 -1.6 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Pf6N2E2_4567 -0.7 -2.3 ThiJ/PfpI family protein compare
Pf6N2E2_1671 -0.7 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_1347 -0.7 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family (EC 1.1.1.-) compare
Pf6N2E2_4382 -0.7 -3.2 FIG00953403: hypothetical protein compare
Pf6N2E2_1157 -0.7 -2.0 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_361 -0.7 -1.5 Peptide ABC transporter, permease protein compare
Pf6N2E2_2903 -0.7 -2.6 Heme oxygenase HemO, associated with heme uptake compare
Pf6N2E2_472 -0.7 -2.2 FKBP-type peptidyl-prolyl cis-trans isomerase compare
Pf6N2E2_955 -0.7 -1.1 FIG00953508: hypothetical protein compare
Pf6N2E2_1802 -0.7 -2.0 polysaccharide deacetylase compare
Pf6N2E2_698 -0.6 -0.8 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_777 -0.6 -2.2 FMN-dependent NADH-azoreductase compare
Pf6N2E2_1464 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_2189 -0.6 -1.9 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_693 -0.6 -1.3 hypothetical protein compare
Pf6N2E2_439 -0.6 -2.3 FIG00958580: hypothetical protein compare
Pf6N2E2_3161 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_1696 -0.6 -1.4 Alkanesulfonates-binding protein compare


Specific Phenotypes

For 11 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms