Experiment set13IT061 for Klebsiella michiganensis M5al

Compare to:

LB 0.1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS01115 -6.0 -2.2 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS20440 -5.9 -2.6 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS01095 -5.7 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS26460 -5.4 -3.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS21350 -4.9 -4.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS19905 -4.8 -3.0 OmpK36 porin compare
BWI76_RS06680 -4.8 -1.1 hypothetical protein compare
BWI76_RS17975 -4.8 -4.2 tail-specific protease compare
BWI76_RS26455 -4.6 -1.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS04305 -4.5 -1.0 molecular chaperone DnaJ compare
BWI76_RS23265 -4.5 -1.4 hypothetical protein compare
BWI76_RS21345 -4.5 -1.6 sigma-E factor regulatory protein RseB compare
BWI76_RS05120 -4.4 -10.3 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS09530 -4.4 -1.0 hypothetical protein compare
BWI76_RS10835 -4.4 -1.0 hypothetical protein compare
BWI76_RS08605 -4.4 -1.6 phosphoglyceromutase compare
BWI76_RS26470 -4.3 -3.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS19840 -4.3 -1.0 hypothetical protein compare
BWI76_RS01110 -4.3 -5.0 TDP-fucosamine acetyltransferase compare
BWI76_RS11155 -4.2 -1.3 penicillin-binding protein activator LpoB compare
BWI76_RS12495 -4.2 -0.9 2-Cys peroxiredoxin compare
BWI76_RS26665 -4.2 -2.0 DNA-binding response regulator compare
BWI76_RS10745 -4.1 -0.9 hypothetical protein compare
BWI76_RS08520 -4.0 -1.5 colicin transporter TolQ compare
BWI76_RS12145 -4.0 -1.7 hypothetical protein compare
BWI76_RS09335 -3.9 -0.9 baseplate assembly protein W compare
BWI76_RS21570 -3.9 -1.7 RnfH family protein compare
BWI76_RS11300 -3.9 -0.8 cupin compare
BWI76_RS22090 -3.7 -1.4 transcriptional regulator compare
BWI76_RS16895 -3.7 -1.2 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS08535 -3.7 -1.4 translocation protein TolB compare
BWI76_RS01630 -3.7 -0.8 16S ribosomal RNA compare
BWI76_RS09645 -3.7 -0.8 thioredoxin-disulfide reductase compare
BWI76_RS13560 -3.5 -0.8 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS04100 -3.4 -2.8 peptide chain release factor 3 compare
BWI76_RS25335 -3.3 -1.2 stringent starvation protein A compare
BWI76_RS08530 -3.3 -1.0 protein TolA compare
BWI76_RS01090 -3.3 -3.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS00720 -3.3 -1.4 DNA-binding response regulator compare
BWI76_RS25920 -3.2 -1.2 peptidylprolyl isomerase compare
BWI76_RS09195 -3.2 -1.0 N-acetyltransferase compare
BWI76_RS08525 -3.2 -2.1 colicin transporter compare
BWI76_RS08020 -3.2 -3.5 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS26670 -3.1 -8.5 two-component sensor histidine kinase compare
BWI76_RS06535 -3.0 -1.9 endopeptidase La compare
BWI76_RS00355 -3.0 -1.1 DNA polymerase I compare
BWI76_RS17980 -3.0 -2.7 RNA chaperone ProQ compare
BWI76_RS10935 -3.0 -3.6 glucan biosynthesis glucosyltransferase H compare
BWI76_RS03225 -3.0 -6.3 transcriptional regulator compare
BWI76_RS23920 -3.0 -1.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS08515 -3.0 -1.8 acyl-CoA thioesterase YbgC compare
BWI76_RS26730 -3.0 -5.3 inner membrane protein YhjD compare
BWI76_RS06295 -2.9 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BWI76_RS04715 -2.9 -1.8 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS01080 -2.9 -6.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS10575 -2.9 -0.9 polar amino acid ABC transporter permease compare
BWI76_RS20360 -2.9 -0.6 cell division protein DedD compare
BWI76_RS00875 -2.8 -3.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS01125 -2.8 -4.2 4-alpha-L-fucosyltransferase compare
BWI76_RS15015 -2.8 -1.2 DUF2132 domain-containing protein compare
BWI76_RS25065 -2.8 -3.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS01350 -2.8 -0.6 NAD(P)H-flavin reductase compare
BWI76_RS15825 -2.8 -0.8 hypothetical protein compare
BWI76_RS00440 -2.8 -1.0 CopG family transcriptional regulator compare
BWI76_RS18815 -2.7 -2.0 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS23360 -2.6 -1.1 diaminopimelate decarboxylase compare
BWI76_RS25070 -2.6 -1.0 hypothetical protein compare
BWI76_RS08405 -2.6 -2.8 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS05015 -2.6 -1.5 transcriptional regulator compare
BWI76_RS20900 -2.5 -0.7 outer membrane protein assembly factor BamC compare
BWI76_RS22485 -2.5 -3.9 hypothetical protein compare
BWI76_RS03105 -2.5 -0.9 myo-inosose-2 dehydratase compare
BWI76_RS07465 -2.5 -0.7 TetR family transcriptional regulator compare
BWI76_RS17570 -2.5 -2.1 iron-sulfur-binding protein compare
BWI76_RS08210 -2.5 -0.8 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS03045 -2.5 -1.5 hypothetical protein compare
BWI76_RS19705 -2.5 -3.3 kinase compare
BWI76_RS09760 -2.5 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21685 -2.4 -0.9 hypothetical protein compare
BWI76_RS04645 -2.4 -3.0 3-dehydroquinase compare
BWI76_RS01385 -2.4 -1.3 potassium transporter compare
BWI76_RS15740 -2.4 -2.7 HNH endonuclease compare
BWI76_RS02775 -2.4 -2.6 outer membrane protein assembly factor compare
BWI76_RS24580 -2.3 -3.6 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS22755 -2.3 -3.2 phosphoadenosine phosphosulfate reductase compare
BWI76_RS01210 -2.3 -0.8 tyrosine recombinase XerC compare
BWI76_RS15635 -2.3 -5.9 hypothetical protein compare
BWI76_RS08385 -2.3 -1.6 citrate (Si)-synthase compare
BWI76_RS01220 -2.2 -4.6 DNA-dependent helicase II compare
BWI76_RS23970 -2.2 -2.3 mechanosensitive ion channel protein MscS compare
BWI76_RS06520 -2.2 -2.4 trigger factor compare
BWI76_RS06475 -2.2 -0.6 protoheme IX farnesyltransferase compare
BWI76_RS24900 -2.2 -0.9 DeoR family transcriptional regulator compare
BWI76_RS02780 -2.2 -7.2 translocation and assembly module TamB compare
BWI76_RS24075 -2.2 -2.0 glutathione synthase compare
BWI76_RS05450 -2.2 -0.6 ribonuclease HI compare
BWI76_RS08040 -2.1 -1.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS25060 -2.1 -4.6 lipoprotein NlpI compare
BWI76_RS05260 -2.1 -0.8 chaperone compare
BWI76_RS09730 -2.1 -0.6 pyruvate formate lyase 1-activating protein compare
BWI76_RS17720 -2.1 -0.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS22475 -2.1 -2.6 heme ABC transporter ATP-binding protein compare
BWI76_RS21370 -2.0 -0.6 ATP-dependent RNA helicase SrmB compare
BWI76_RS27440 -2.0 -1.3 DNA helicase RecG compare
BWI76_RS00400 -2.0 -0.7 glutamine synthetase compare
BWI76_RS27165 -2.0 -3.4 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS23830 -2.0 -4.4 hypothetical protein compare
BWI76_RS26080 -1.9 -3.3 cell division protein DamX compare
BWI76_RS26390 -1.9 -3.7 cell division protein FtsX compare
BWI76_RS05075 -1.9 -0.4 type II secretion system protein GspG compare
BWI76_RS09190 -1.9 -1.3 hypothetical protein compare
BWI76_RS12215 -1.9 -3.6 HNH endonuclease compare
BWI76_RS00345 -1.9 -2.2 protein disulfide oxidoreductase DsbA compare
BWI76_RS09970 -1.9 -0.9 porin OmpA compare
BWI76_RS18335 -1.9 -5.9 DNA-binding response regulator compare
BWI76_RS12300 -1.9 -4.5 hypothetical protein compare
BWI76_RS19670 -1.9 -1.6 S-formylglutathione hydrolase compare
BWI76_RS21375 -1.8 -0.5 autonomous glycyl radical cofactor GrcA compare
BWI76_RS17300 -1.8 -0.5 tRNA-Tyr compare
BWI76_RS16965 -1.8 -1.9 murein lipoprotein compare
BWI76_RS19920 -1.8 -5.6 hybrid sensor histidine kinase/response regulator compare
BWI76_RS00240 -1.8 -0.8 FMN-binding protein MioC compare
BWI76_RS24765 -1.8 -2.7 membrane protein compare
BWI76_RS22805 -1.8 -4.4 GTP diphosphokinase compare
BWI76_RS19010 -1.8 -1.5 polysaccharide pyruvyl transferase yvff compare
BWI76_RS15110 -1.8 -5.5 putative excinuclease ABC subunit A compare
BWI76_RS27425 -1.8 -1.1 DNA-directed RNA polymerase subunit omega compare
BWI76_RS11440 -1.8 -0.8 hypothetical protein compare
BWI76_RS23580 -1.8 -1.2 hypothetical protein compare
BWI76_RS16515 -1.8 -1.4 LysR family transcriptional regulator compare
BWI76_RS11435 -1.7 -1.7 hypothetical protein compare
BWI76_RS02550 -1.7 -3.8 protease modulator HflC compare
BWI76_RS26590 -1.7 -2.4 transcriptional regulator compare
BWI76_RS21710 -1.7 -4.5 nitroreductase compare
BWI76_RS09825 -1.7 -3.2 envelope biogenesis factor ElyC compare
BWI76_RS15920 -1.7 -0.9 hypothetical protein compare
BWI76_RS24100 -1.7 -1.7 YggS family pyridoxal phosphate enzyme compare
BWI76_RS00430 -1.7 -3.8 GNAT family N-acetyltransferase compare
BWI76_RS26200 -1.7 -3.4 starch synthase compare
BWI76_RS14005 -1.7 -1.0 TetR family transcriptional regulator compare
BWI76_RS16210 -1.7 -1.1 hypothetical protein compare
BWI76_RS23825 -1.7 -7.2 hypothetical protein compare
BWI76_RS19035 -1.7 -5.9 dTDP-rhamnosyl transferase compare
BWI76_RS01085 -1.6 -4.5 polysaccharide chain length modulation protein compare
BWI76_RS14415 -1.6 -1.1 transcriptional regulator, TetR family protein compare
BWI76_RS26765 -1.6 -6.1 phosphodiesterase compare
BWI76_RS19910 -1.6 -7.5 phosphotransferase RcsD compare
BWI76_RS18230 -1.6 -2.1 trehalose-6-phosphate synthase compare
BWI76_RS01170 -1.6 -1.6 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS07185 -1.6 -0.8 hypothetical protein compare
BWI76_RS12240 -1.6 -2.8 terminase small subunit compare
BWI76_RS08380 -1.6 -1.0 endonuclease VIII compare
BWI76_RS27875 -1.6 -1.2 membrane protein compare
BWI76_RS01135 -1.6 -2.4 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS22645 -1.6 -5.3 RNA polymerase sigma factor RpoS compare
BWI76_RS17185 -1.6 -1.1 fructosamine kinase family protein compare
BWI76_RS06015 -1.6 -1.2 hypothetical protein compare
BWI76_RS11015 -1.6 -1.8 hypothetical protein compare
BWI76_RS13915 -1.5 -5.1 magnesium transport protein MgtC compare
BWI76_RS13755 -1.5 -0.8 hypothetical protein compare
BWI76_RS19770 -1.5 -0.9 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS24605 -1.5 -3.9 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS05350 -1.5 -5.7 Rcs stress response system protein RcsF compare
BWI76_RS13435 -1.5 -1.0 hypothetical protein compare
BWI76_RS05880 -1.5 -1.2 AraC-type DNA-binding domain-containing protein compare
BWI76_RS14505 -1.5 -1.0 salicylate synthase Irp9 compare
BWI76_RS10930 -1.5 -4.2 glucan biosynthesis protein G compare
BWI76_RS24850 -1.5 -3.3 DeoR family transcriptional regulator compare
BWI76_RS01905 -1.5 -1.4 envelope stress response protein PspG compare
BWI76_RS08720 -1.5 -0.8 imidazolonepropionase compare
BWI76_RS15590 -1.5 -2.4 hypothetical protein compare
BWI76_RS26095 -1.5 -0.4 shikimate kinase compare
BWI76_RS21255 -1.5 -3.2 hypothetical protein compare
BWI76_RS19935 -1.5 -1.1 hypothetical protein compare
BWI76_RS21580 -1.5 -0.5 SsrA-binding protein compare
BWI76_RS11520 -1.5 -0.8 hypothetical protein compare
BWI76_RS00795 -1.5 -1.9 carboxymuconolactone decarboxylase compare
BWI76_RS12265 -1.4 -3.0 hypothetical protein compare
BWI76_RS02530 -1.4 -0.7 tRNA dimethylallyltransferase compare
BWI76_RS04160 -1.4 -1.8 phosphoserine phosphatase compare
BWI76_RS02340 -1.4 -2.8 membrane protein FxsA compare
BWI76_RS06490 -1.4 -3.0 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS13920 -1.4 -3.1 magnesium-translocating P-type ATPase compare
BWI76_RS06465 -1.4 -1.7 IclR family transcriptional regulator compare
BWI76_RS15000 -1.4 -2.0 amino acid ABC transporter ATP-binding protein compare
BWI76_RS02735 -1.4 -2.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS23490 -1.4 -2.9 fimbrial protein compare
BWI76_RS27820 -1.4 -0.4 ilvB operon leader peptide IvbL compare
BWI76_RS17675 -1.4 -0.8 hypothetical protein compare
BWI76_RS22955 -1.4 -2.2 transcriptional regulator GcvA compare
BWI76_RS21245 -1.4 -2.4 nitrogen regulatory protein P-II compare
BWI76_RS12205 -1.4 -2.1 hypothetical protein compare
BWI76_RS06780 -1.4 -2.5 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS22950 -1.4 -1.5 membrane protein compare
BWI76_RS10060 -1.4 -0.8 acylphosphatase compare
BWI76_RS05680 -1.4 -2.9 LacI family transcriptional regulator compare
BWI76_RS12345 -1.4 -2.4 nitrite transporter compare
BWI76_RS11275 -1.4 -2.1 sensor protein PhoQ compare
BWI76_RS16935 -1.4 -0.9 shikimate dehydrogenase compare
BWI76_RS21680 -1.4 -2.5 antitoxin of the YeeV-YeeU toxin-antitoxin system compare


Specific Phenotypes

For 3 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL across organisms