Experiment set13IT060 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 1 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.1 -3.5 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_43 -3.5 -4.2 Histidine permease YuiF compare
Pf6N2E2_5679 -3.1 -4.2 hypothetical protein compare
Pf6N2E2_3574 -2.9 -12.3 Mannose-6-phosphate isomerase (EC 5.3.1.8) conserved
Pf6N2E2_238 -2.8 -2.6 hypothetical protein compare
Pf6N2E2_4797 -2.6 -1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_178 -2.4 -1.3 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4071 -2.3 -3.3 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_5527 -2.3 -2.9 Cold shock protein CspC compare
Pf6N2E2_1634 -2.3 -4.7 ABC-type Fe3+-siderophore transport system, permease component compare
Pf6N2E2_1683 -2.1 -3.3 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2574 -2.1 -2.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_1981 -2.1 -4.1 FIG051360: Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4162 -2.0 -3.0 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_902 -2.0 -2.5 hypothetical protein compare
Pf6N2E2_3661 -2.0 -6.1 hypothetical protein compare
Pf6N2E2_3351 -1.8 -3.2 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_3325 -1.8 -2.0 ABC transporter, ATP-binding protein compare
Pf6N2E2_3461 -1.8 -1.1 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_1635 -1.7 -3.8 ABC-type cobalamin/Fe3+-siderophores transport systems ATPase components compare
Pf6N2E2_5986 -1.6 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2510 -1.6 -2.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5768 -1.6 -3.1 DNA recombination-dependent growth factor C compare
Pf6N2E2_5261 -1.6 -0.8 FIG00956983: hypothetical protein compare
Pf6N2E2_3908 -1.6 -3.1 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_2706 -1.5 -2.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_1534 -1.5 -1.6 Probable transmembrane protein compare
Pf6N2E2_4418 -1.5 -0.8 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_1625 -1.5 -2.6 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3040 -1.5 -6.6 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_3264 -1.5 -4.2 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3190 -1.5 -4.9 Iron-sulfur cluster regulator IscR compare
Pf6N2E2_122 -1.4 -2.0 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_971 -1.4 -2.2 hypothetical protein compare
Pf6N2E2_2912 -1.4 -0.9 FIG00954094: hypothetical protein compare
Pf6N2E2_2681 -1.3 -1.7 3-phosphoglycerate kinase compare
Pf6N2E2_1312 -1.3 -2.1 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS) compare
Pf6N2E2_2284 -1.3 -1.9 Cell division inhibitor-related protein compare
Pf6N2E2_1238 -1.3 -2.5 hypothetical protein compare
Pf6N2E2_737 -1.3 -1.6 Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) compare
Pf6N2E2_1136 -1.3 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_1636 -1.3 -4.6 Ferrichrome-iron receptor compare
Pf6N2E2_1211 -1.3 -2.1 Lactoylglutathione lyase compare
Pf6N2E2_5711 -1.3 -4.9 tRNA(Cytosine32)-2-thiocytidine synthetase compare
Pf6N2E2_1694 -1.3 -1.3 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_1156 -1.3 -1.9 hypothetical protein compare
Pf6N2E2_827 -1.3 -1.9 probable dioxygenase compare
Pf6N2E2_2518 -1.3 -2.2 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2447 -1.3 -4.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf6N2E2_4276 -1.2 -3.2 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2282 -1.2 -1.8 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
Pf6N2E2_4534 -1.2 -2.2 hypothetical protein compare
Pf6N2E2_2825 -1.2 -4.2 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_1626 -1.2 -4.1 Putative ATP-binding component of a transport system compare
Pf6N2E2_5739 -1.2 -1.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_5703 -1.2 -2.4 outer membrane protein H1 compare
Pf6N2E2_3255 -1.2 -2.4 YrbA protein compare
Pf6N2E2_2835 -1.2 -2.4 Beta-ketoadipyl CoA thiolase (EC 2.3.1.-) compare
Pf6N2E2_5678 -1.2 -3.8 hypothetical protein compare
Pf6N2E2_4075 -1.1 -4.6 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_1617 -1.1 -1.2 COG2199: FOG: GGDEF domain compare
Pf6N2E2_5342 -1.1 -1.7 21 kDa hemolysin precursor compare
Pf6N2E2_4541 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_241 -1.1 -1.5 hypothetical protein compare
Pf6N2E2_728 -1.1 -2.0 Nitrate/nitrite transporter compare
Pf6N2E2_4453 -1.1 -7.6 Polyphosphate kinase (EC 2.7.4.1) compare
Pf6N2E2_1305 -1.1 -1.9 Homoprotocatechuate degradative operon repressor compare
Pf6N2E2_2536 -1.1 -1.6 Fumarate hydratase class II (EC 4.2.1.2) compare
Pf6N2E2_4640 -1.1 -0.6 hypothetical protein compare
Pf6N2E2_2121 -1.1 -1.7 hypothetical protein compare
Pf6N2E2_5841 -1.1 -1.1 GlcG protein compare
Pf6N2E2_4072 -1.1 -4.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_5430 -1.1 -3.3 Transglycosylase, Slt family compare
Pf6N2E2_1287 -1.1 -2.1 Mobile element protein compare
Pf6N2E2_170 -1.1 -1.8 lipoprotein, putative compare
Pf6N2E2_5720 -1.1 -4.0 BarA sensory histidine kinase (= VarS = GacS) compare
Pf6N2E2_4661 -1.0 -2.1 KluA regulatory protein compare
Pf6N2E2_5613 -1.0 -1.9 FIG00953674: hypothetical protein compare
Pf6N2E2_5677 -1.0 -1.5 Carbon storage regulator compare
Pf6N2E2_2827 -1.0 -0.9 hypothetical protein compare
Pf6N2E2_1633 -1.0 -2.6 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_4612 -1.0 -2.8 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_4691 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_116 -1.0 -2.8 Glycosyltransferase compare
Pf6N2E2_3270 -1.0 -2.8 Hypothetical ATP-binding protein UPF0042, contains P-loop compare
Pf6N2E2_882 -1.0 -1.9 FIG00961517: hypothetical protein compare
Pf6N2E2_1875 -1.0 -1.4 Protoporphyrinogen oxidase (EC 1.3.3.4) compare
Pf6N2E2_2264 -1.0 -1.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
Pf6N2E2_2732 -1.0 -3.2 Transcriptional regulator, LysR family compare
Pf6N2E2_623 -1.0 -0.8 FIG00954674: hypothetical protein compare
Pf6N2E2_163 -1.0 -2.8 Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) compare
Pf6N2E2_478 -1.0 -1.7 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_5723 -1.0 -4.7 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) compare
Pf6N2E2_1157 -0.9 -2.5 hypothetical protein possibly connected to lactam utilization and allophanate hydrolase compare
Pf6N2E2_1671 -0.9 -2.4 Transcriptional regulator, TetR family compare
Pf6N2E2_612 -0.9 -2.4 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
Pf6N2E2_3122 -0.9 -1.3 Chemotaxis signal transduction protein compare
Pf6N2E2_3454 -0.9 -1.6 hypothetical protein compare
Pf6N2E2_546 -0.9 -1.1 FIG00966904: hypothetical protein compare
Pf6N2E2_4352 -0.9 -0.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_2857 -0.9 -1.9 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf6N2E2_1249 -0.9 -1.6 Transcriptional regulator, AraC family compare
Pf6N2E2_3252 -0.9 -3.7 Histidinol dehydrogenase (EC 1.1.1.23) compare
Pf6N2E2_5088 -0.9 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4204 -0.9 -0.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_3326 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_55 -0.9 -1.5 Probable hydrolase compare
Pf6N2E2_3841 -0.9 -2.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf6N2E2_1886 -0.9 -1.4 hypothetical protein compare
Pf6N2E2_4974 -0.9 -4.2 DedA protein compare
Pf6N2E2_3666 -0.9 -1.2 InaA protein compare
Pf6N2E2_3240 -0.9 -0.9 Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) compare
Pf6N2E2_760 -0.9 -5.7 Na+/H+ antiporter NhaB compare
Pf6N2E2_3199 -0.9 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) compare
Pf6N2E2_6063 -0.9 -3.5 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_1288 -0.9 -1.4 Protein containing transglutaminase-like domain, putative cysteine protease compare
Pf6N2E2_1959 -0.9 -2.4 D-sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
Pf6N2E2_4416 -0.9 -0.8 Tyrosine recombinase XerC compare
Pf6N2E2_3829 -0.9 -2.3 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Pf6N2E2_2072 -0.9 -2.3 hypothetical protein compare
Pf6N2E2_4188 -0.9 -1.8 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf6N2E2_1165 -0.9 -1.9 hypothetical protein compare
Pf6N2E2_3612 -0.9 -1.7 HflK protein compare
Pf6N2E2_3715 -0.9 -2.9 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-) compare
Pf6N2E2_3532 -0.9 -2.5 Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) compare
Pf6N2E2_4074 -0.8 -6.8 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_5668 -0.8 -2.6 Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) compare
Pf6N2E2_443 -0.8 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1989 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_947 -0.8 -2.7 Multidrug efflux membrane fusion protein MexE compare
Pf6N2E2_1213 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_2252 -0.8 -2.6 NreA-like protein compare
Pf6N2E2_81 -0.8 -2.3 hypothetical protein compare
Pf6N2E2_647 -0.8 -1.6 General secretion pathway protein G compare
Pf6N2E2_1173 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_4153 -0.8 -2.5 Sensory box histidine kinase compare
Pf6N2E2_442 -0.8 -2.0 FIG00962345: hypothetical protein compare
Pf6N2E2_3321 -0.8 -3.3 Ornithine cyclodeaminase (EC 4.3.1.12) compare
Pf6N2E2_464 -0.8 -1.2 Sensory histidine kinase QseC compare
Pf6N2E2_2218 -0.8 -1.9 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_160 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_813 -0.8 -1.4 Response regulator compare
Pf6N2E2_1652 -0.8 -1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_3100 -0.8 -1.6 FIG00953063: hypothetical protein compare
Pf6N2E2_2388 -0.8 -1.5 Esterase/lipase/thioesterase family protein compare
Pf6N2E2_3039 -0.8 -4.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_3535 -0.8 -1.8 Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) compare
Pf6N2E2_1732 -0.8 -1.9 hypothetical protein compare
Pf6N2E2_4751 -0.8 -2.1 response regulator compare
Pf6N2E2_552 -0.8 -1.8 Uncharacterized protein ImpF compare
Pf6N2E2_1083 -0.8 -1.1 hypothetical protein compare
Pf6N2E2_5419 -0.8 -2.1 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_4447 -0.8 -6.2 Cytochrome c family protein conserved
Pf6N2E2_3339 -0.8 -4.0 Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9) compare
Pf6N2E2_1436 -0.8 -1.9 FMN reductase (EC 1.5.1.29) compare
Pf6N2E2_5573 -0.8 -2.5 Glycerol-3-phosphate regulon repressor, DeoR family compare
Pf6N2E2_5902 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_895 -0.8 -2.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_3234 -0.8 -2.4 mandelate racemase/muconate lactonizing enzyme family protein compare
Pf6N2E2_2438 -0.8 -0.9 hypothetical protein compare
Pf6N2E2_114 -0.8 -2.0 Polysaccharide biosynthesis protein compare
Pf6N2E2_3597 -0.8 -1.8 hypothetical protein compare
Pf6N2E2_2306 -0.8 -2.3 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_417 -0.8 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_555 -0.8 -2.3 Uncharacterized protein ImpB compare
Pf6N2E2_613 -0.8 -0.9 lipoprotein, putative compare
Pf6N2E2_3940 -0.8 -4.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2251 -0.8 -2.2 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) conserved
Pf6N2E2_1974 -0.8 -2.4 FIG141694: hypothetical protein in PFGI-1-like cluster compare
Pf6N2E2_2007 -0.8 -2.3 Error-prone, lesion bypass DNA polymerase V (UmuC) compare
Pf6N2E2_3830 -0.7 -2.0 Glutaredoxin 3 (Grx3) compare
Pf6N2E2_423 -0.7 -0.6 Putative phosphatase YfbT compare
Pf6N2E2_314 -0.7 -2.2 Isochorismatase (EC 3.3.2.1) compare
Pf6N2E2_5534 -0.7 -1.2 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3161 -0.7 -2.1 hypothetical protein compare
Pf6N2E2_5955 -0.7 -1.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf6N2E2_5158 -0.7 -1.8 FIG00954153: hypothetical protein compare
Pf6N2E2_5987 -0.7 -2.7 OmpA family protein compare
Pf6N2E2_5669 -0.7 -3.3 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf6N2E2_4570 -0.7 -1.6 Cation/multidrug efflux pump compare
Pf6N2E2_5049 -0.7 -1.3 acetyltransferase, GNAT family compare
Pf6N2E2_1522 -0.7 -2.0 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_1545 -0.7 -1.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_1885 -0.7 -1.7 Transcriptional regulator, AraC family compare
Pf6N2E2_5536 -0.7 -0.8 Holliday junction DNA helicase RuvA compare
Pf6N2E2_165 -0.7 -2.0 Ribokinase (EC 2.7.1.15) conserved
Pf6N2E2_2223 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_5219 -0.7 -3.6 FIG140336: TPR domain protein compare
Pf6N2E2_2111 -0.7 -1.2 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit A (from data) compare
Pf6N2E2_5740 -0.7 -1.3 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Pf6N2E2_4749 -0.7 -2.0 DNA polymerase III epsilon subunit (EC 2.7.7.7) compare
Pf6N2E2_2433 -0.7 -2.0 Probable transmembrane protein compare
Pf6N2E2_4954 -0.7 -2.7 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) compare
Pf6N2E2_1894 -0.7 -2.2 hypothetical protein compare
Pf6N2E2_2646 -0.7 -0.6 FIG00953416: hypothetical protein compare
Pf6N2E2_4594 -0.7 -1.4 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf6N2E2_1199 -0.7 -0.9 hypothetical protein compare
Pf6N2E2_4918 -0.7 -1.2 Ribonucleotide reductase transcriptional regulator NrdR compare
Pf6N2E2_1014 -0.7 -1.0 Nitrate/nitrite transporter compare
Pf6N2E2_2867 -0.7 -2.5 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms