Experiment set13IT060 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Nickel (II) chloride hexahydrate 1 mM

200 most detrimental genes:

  gene name fitness t score description  
Pf6N2E2_4659 +2.1 8.0 Lipoprotein, putative compare
Pf6N2E2_5150 +2.1 11.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_156 +2.0 5.2 Carbon storage regulator compare
Pf6N2E2_4658 +1.9 5.6 FIG00955006: hypothetical protein compare
Pf6N2E2_445 +1.8 10.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2013 +1.7 1.4 hypothetical protein compare
Pf6N2E2_4987 +1.7 1.9 MaoC-like domain protein compare
Pf6N2E2_4369 +1.5 3.4 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5103 +1.4 1.6 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_4068 +1.4 11.2 Phosphate regulon metal ion transporter containing CBS domains compare
Pf6N2E2_2180 +1.4 7.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_3192 +1.4 5.9 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_3791 +1.4 9.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2181 +1.4 4.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5015 +1.4 6.4 Magnesium and cobalt efflux protein CorC compare
Pf6N2E2_1294 +1.3 2.6 Carbon starvation protein A compare
Pf6N2E2_3114 +1.3 7.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3191 +1.3 5.3 Serine acetyltransferase (EC 2.3.1.30) compare
Pf6N2E2_5761 +1.3 1.5 Transcriptional regulator, TetR family compare
Pf6N2E2_2003 +1.3 1.7 hypothetical protein compare
Pf6N2E2_1774 +1.2 1.5 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_1009 +1.2 3.1 Inositol transport system permease protein compare
Pf6N2E2_4678 +1.2 1.4 hypothetical protein compare
Pf6N2E2_1824 +1.2 1.9 hypothetical protein compare
Pf6N2E2_500 +1.2 2.4 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_3828 +1.2 3.6 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf6N2E2_987 +1.2 1.1 hypothetical protein compare
Pf6N2E2_5316 +1.2 2.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3696 +1.2 1.6 hypothetical protein compare
Pf6N2E2_2179 +1.1 6.7 Putrescine importer compare
Pf6N2E2_3152 +1.1 7.1 Magnesium and cobalt efflux protein CorC conserved
Pf6N2E2_5242 +1.1 1.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_3521 +1.1 7.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_5262 +1.0 2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf6N2E2_3792 +1.0 6.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2440 +1.0 1.6 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_4531 +1.0 2.2 hypothetical protein compare
Pf6N2E2_2200 +1.0 1.4 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_4300 +1.0 2.0 Uncharacterized protein similar to VCA0109 compare
Pf6N2E2_1210 +1.0 4.2 putative aminotransferase compare
Pf6N2E2_1091 +1.0 2.5 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-) compare
Pf6N2E2_2176 +1.0 2.3 Amidases related to nicotinamidase compare
Pf6N2E2_89 +1.0 2.1 hypothetical protein compare
Pf6N2E2_888 +1.0 1.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1085 +0.9 2.1 Fe2+/Zn2+ uptake regulation proteins compare
Pf6N2E2_5508 +0.9 1.1 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4362 +0.9 2.1 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_1303 +0.9 2.2 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Pf6N2E2_37 +0.9 1.9 6-carboxytetrahydropterin synthase (EC 4.1.2.50) @ Queuosine biosynthesis QueD, PTPS-I compare
Pf6N2E2_3300 +0.9 1.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5274 +0.9 5.7 FolM Alternative dihydrofolate reductase 1 conserved
Pf6N2E2_3505 +0.9 0.5 Translation initiation factor SUI1-related protein compare
Pf6N2E2_1935 +0.9 2.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_1141 +0.9 2.0 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_868 +0.9 1.1 Transcriptional regulator, HxlR family compare
Pf6N2E2_660 +0.9 2.2 hypothetical protein compare
Pf6N2E2_1035 +0.9 2.4 MotA/TolQ/ExbB proton channel family protein compare
Pf6N2E2_5775 +0.8 2.7 FOG: TPR repeat, SEL1 subfamily compare
Pf6N2E2_1322 +0.8 2.3 MoaE protein compare
Pf6N2E2_896 +0.8 2.1 Regulatory protein, LysR:LysR, substrate-binding compare
Pf6N2E2_2045 +0.8 2.1 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) compare
Pf6N2E2_988 +0.8 2.2 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) compare
Pf6N2E2_1676 +0.8 1.2 conserved protein associated with acetyl-CoA C-acyltransferase compare
Pf6N2E2_953 +0.8 1.4 FIG00958851: hypothetical protein compare
Pf6N2E2_2480 +0.8 1.0 FIG00957636: hypothetical protein compare
Pf6N2E2_4624 +0.8 1.1 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_4159 +0.8 5.1 Cytochrome c4 compare
Pf6N2E2_4555 +0.8 5.7 Lysophospholipase (EC 3.1.1.5) compare
Pf6N2E2_5571 +0.8 1.3 hypothetical protein compare
Pf6N2E2_2899 +0.8 2.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Pf6N2E2_5990 +0.8 1.3 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_2074 +0.8 0.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_3397 +0.8 2.1 Phage protein compare
Pf6N2E2_1458 +0.8 3.0 probable transporter, LysE family compare
Pf6N2E2_4590 +0.8 3.5 Thiazole biosynthesis protein ThiG compare
Pf6N2E2_5320 +0.8 4.9 Cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-) compare
Pf6N2E2_449 +0.8 2.3 Lactoylglutathione lyase (EC 4.4.1.5) compare
Pf6N2E2_2309 +0.8 1.9 hypothetical protein compare
Pf6N2E2_2688 +0.7 1.9 YD repeat protein compare
Pf6N2E2_4445 +0.7 3.2 TPR domain protein compare
Pf6N2E2_1116 +0.7 0.9 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_4734 +0.7 4.3 Acyltransferase family protein compare
Pf6N2E2_6099 +0.7 1.0 tRNA-Glu-TTC compare
Pf6N2E2_6090 +0.7 1.5 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf6N2E2_648 +0.7 1.3 General secretion pathway protein K compare
Pf6N2E2_1917 +0.7 1.5 hypothetical protein compare
Pf6N2E2_3630 +0.7 3.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf6N2E2_2656 +0.7 1.9 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_5131 +0.7 2.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_1533 +0.7 2.6 membrane protein, putative compare
Pf6N2E2_1057 +0.7 3.4 hypothetical protein compare
Pf6N2E2_5722 +0.7 2.9 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 compare
Pf6N2E2_2919 +0.7 1.3 FIG00955830: hypothetical protein compare
Pf6N2E2_2371 +0.7 1.4 Type III secretion outermembrane contact sensing protein (YopN,Yop4b,LcrE) compare
Pf6N2E2_1504 +0.7 1.7 putative 2-pyrone-4,6-dicarboxylic acid hydrolase compare
Pf6N2E2_370 +0.7 2.3 Predicted enzyme of the cupin superfamily compare
Pf6N2E2_2894 +0.7 3.0 N-acylglucosamine 2-epimerase (EC 5.1.3.8) compare
Pf6N2E2_391 +0.7 2.3 hypothetical protein compare
Pf6N2E2_1870 +0.7 1.0 hypothetical protein compare
Pf6N2E2_1335 +0.7 1.4 Phospholipid-binding protein compare
Pf6N2E2_5272 +0.7 1.7 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_2177 +0.7 2.2 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf6N2E2_617 +0.7 2.0 Probable glutathione S-transferase compare
Pf6N2E2_5321 +0.7 4.8 Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB compare
Pf6N2E2_1510 +0.7 2.8 FIG00450095: hypothetical protein compare
Pf6N2E2_712 +0.7 2.2 hypothetical protein compare
Pf6N2E2_5967 +0.7 1.7 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_6130 +0.7 2.2 5S RNA compare
Pf6N2E2_1059 +0.7 4.3 Phosphoglucomutase (EC 5.4.2.2) compare
Pf6N2E2_1490 +0.7 1.3 hypothetical protein compare
Pf6N2E2_1319 +0.7 1.8 FIG074102: hypothetical protein compare
Pf6N2E2_4454 +0.7 3.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_1755 +0.6 1.9 2-Oxobutyrate oxidase, putative compare
Pf6N2E2_6018 +0.6 1.7 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_4077 +0.6 1.5 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_1302 +0.6 2.0 TRAP-type C4-dicarboxylate transport system, large permease component compare
Pf6N2E2_4584 +0.6 1.4 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2833 +0.6 2.4 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_1579 +0.6 1.8 hypothetical protein compare
Pf6N2E2_3096 +0.6 1.2 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_1129 +0.6 1.8 Sensor histidine kinase compare
Pf6N2E2_4181 +0.6 1.1 Organic hydroperoxide resistance protein compare
Pf6N2E2_768 +0.6 2.2 Fap amyloid fibril minor component compare
Pf6N2E2_1162 +0.6 0.7 Transmembrane amino acid efflux protein compare
Pf6N2E2_1525 +0.6 1.8 Universal stress protein family 5 compare
Pf6N2E2_2313 +0.6 1.9 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4984 +0.6 1.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2509 +0.6 1.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_701 +0.6 2.0 Heme d1 biosynthesis protein NirD / Heme d1 biosynthesis protein NirL compare
Pf6N2E2_3856 +0.6 3.0 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_1403 +0.6 1.6 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf6N2E2_6081 +0.6 1.7 Transcriptional regulator, TetR family, in cluster with 2-hydroxychromene-2-carboxylate isomerase family protein, glutathione-dependent compare
Pf6N2E2_1093 +0.6 1.6 Transcriptional regulatory protein compare
Pf6N2E2_814 +0.6 1.6 hypothetical protein compare
Pf6N2E2_4427 +0.6 1.1 FIG00954215: hypothetical protein compare
Pf6N2E2_1337 +0.6 2.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_5317 +0.6 4.9 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Pf6N2E2_5252 +0.6 1.2 FIG00956396: hypothetical protein compare
Pf6N2E2_1236 +0.6 1.2 Transcriptional regulator, LysR family compare
Pf6N2E2_1665 +0.6 1.4 hypothetical protein compare
Pf6N2E2_1588 +0.6 2.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf6N2E2_751 +0.6 1.6 Electron transfer flavoprotein, beta subunit compare
Pf6N2E2_3257 +0.6 1.4 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3875 +0.6 1.0 FIG00953324: hypothetical protein compare
Pf6N2E2_1182 +0.6 1.5 Transcriptional regulator, LysR family compare
Pf6N2E2_3793 +0.6 2.5 D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1) compare
Pf6N2E2_1718 +0.6 0.8 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) compare
Pf6N2E2_189 +0.6 1.6 regulatory protein, putative compare
Pf6N2E2_1884 +0.6 2.1 oxidoreductase, short-chain dehydrogenase/reductase family compare
Pf6N2E2_4087 +0.6 3.9 L-asparaginase (EC 3.5.1.1) (from data) compare
Pf6N2E2_90 +0.6 2.1 Lipoprotein, putative compare
Pf6N2E2_5505 +0.6 1.1 hypothetical protein compare
Pf6N2E2_2682 +0.6 1.1 Transcriptional regulator, LysR family compare
Pf6N2E2_1647 +0.6 2.4 Maltose/maltodextrin ABC transporter, permease protein MalF compare
Pf6N2E2_928 +0.6 1.5 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_4630 +0.6 2.2 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_2054 +0.6 2.0 hypothetical protein compare
Pf6N2E2_847 +0.6 1.7 Phosphoribosyl transferase domain protein compare
Pf6N2E2_2126 +0.6 2.4 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_1567 +0.6 1.6 FIG00964846: hypothetical protein compare
Pf6N2E2_1538 +0.6 2.2 Sensory histidine kinase QseC compare
Pf6N2E2_5133 +0.6 1.1 FIG00953980: hypothetical protein compare
Pf6N2E2_194 +0.6 1.4 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf6N2E2_4092 +0.6 1.5 FIG00954395: hypothetical protein compare
Pf6N2E2_1476 +0.6 1.4 (AF179595) Vco33 compare
Pf6N2E2_2310 +0.6 4.3 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5243 +0.6 0.6 hypothetical protein compare
Pf6N2E2_167 +0.6 2.6 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) compare
Pf6N2E2_754 +0.6 1.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_438 +0.6 1.9 hypothetical protein compare
Pf6N2E2_2893 +0.6 3.2 hypothetical protein compare
Pf6N2E2_5499 +0.6 0.8 hypothetical protein compare
Pf6N2E2_2489 +0.6 2.3 UPF0028 protein YchK compare
Pf6N2E2_4976 +0.6 3.5 Ethanolamine ammonia-lyase light chain (EC 4.3.1.7) compare
Pf6N2E2_570 +0.6 1.8 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Pf6N2E2_3328 +0.6 1.1 transcriptional regulator compare
Pf6N2E2_5061 +0.5 1.9 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) compare
Pf6N2E2_515 +0.5 2.8 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
Pf6N2E2_1501 +0.5 1.3 Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17) compare
Pf6N2E2_786 +0.5 1.7 Type-1 fimbrial protein, A chain precursor compare
Pf6N2E2_1339 +0.5 1.3 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4733 +0.5 0.9 hypothetical protein compare
Pf6N2E2_4146 +0.5 1.7 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf6N2E2_3183 +0.5 1.5 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_2881 +0.5 1.8 Putative cytoplasmic protein compare
Pf6N2E2_144 +0.5 5.1 Uncharacterized protein YtfM precursor compare
Pf6N2E2_1298 +0.5 1.9 Xanthine transporter,putative compare
Pf6N2E2_1549 +0.5 1.6 Transcriptional regulator, LysR family compare
Pf6N2E2_1106 +0.5 1.8 Chromosome initiation inhibitor compare
Pf6N2E2_1046 +0.5 1.7 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_375 +0.5 1.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_3785 +0.5 3.5 Twin-arginine translocation protein TatB compare
Pf6N2E2_5318 +0.5 4.8 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Pf6N2E2_724 +0.5 1.2 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf6N2E2_42 +0.5 1.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_3055 +0.5 1.5 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_1404 +0.5 1.2 Nitrous oxide reductase maturation transmembrane protein NosY compare
Pf6N2E2_1877 +0.5 1.5 putative transmembrane efflux protein. compare
Pf6N2E2_2844 +0.5 1.9 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf6N2E2_1317 +0.5 1.1 P-hydroxyphenylacetate hydroxylase C2:oxygenase component compare


Specific Phenotypes

For 3 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas fluorescens FW300-N2E2

For stress Nickel (II) chloride hexahydrate across organisms