Experiment set13IT058 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Ammonium chloride (N); with TAPS

200 most important genes:

  gene name fitness t score description  
PFLU_RS23590 -5.5 -3.8 gluconokinase compare
PFLU_RS20575 -4.9 -5.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS20565 -4.5 -10.5 3-isopropylmalate dehydrogenase compare
PFLU_RS28535 -4.5 -13.3 dihydroxy-acid dehydratase compare
PFLU_RS20580 -4.3 -10.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS24765 -4.1 -20.3 2-isopropylmalate synthase compare
PFLU_RS27640 -4.0 -2.7 alpha/beta fold hydrolase compare
PFLU_RS29880 -3.8 -16.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25640 -3.8 -11.5 ketol-acid reductoisomerase compare
PFLU_RS29875 -3.7 -18.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS02490 -3.7 -14.4 phosphoserine phosphatase SerB compare
PFLU_RS28695 -3.6 -9.3 phosphoglycerate dehydrogenase compare
PFLU_RS18395 -3.6 -2.5 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS00175 -3.5 -6.3 tryptophan synthase subunit alpha compare
PFLU_RS01605 -3.5 -6.7 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS24025 -3.5 -12.2 quinolinate synthase NadA compare
PFLU_RS03970 -3.4 -11.0 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27370 -3.4 -12.6 anthranilate phosphoribosyltransferase compare
PFLU_RS28165 -3.4 -13.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS27365 -3.4 -10.7 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS00180 -3.3 -6.8 tryptophan synthase subunit beta compare
PFLU_RS20540 -3.3 -11.1 phosphoribosylanthranilate isomerase compare
PFLU_RS23585 -3.3 -9.4 GntP family permease compare
PFLU_RS28390 -3.2 -11.6 methionine biosynthesis protein MetW compare
PFLU_RS29885 -3.2 -13.3 LysR family transcriptional regulator compare
PFLU_RS04470 -3.1 -11.2 histidinol dehydrogenase compare
PFLU_RS01620 -3.1 -6.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20510 -3.1 -14.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28645 -3.1 -15.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS29095 -3.0 -22.4 polyphosphate kinase 1 compare
PFLU_RS31440 -3.0 -2.0 hypothetical protein compare
PFLU_RS20515 -3.0 -3.5 amidophosphoribosyltransferase compare
PFLU_RS18505 -3.0 -8.2 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS07665 -2.9 -2.8 type I DNA topoisomerase compare
PFLU_RS04465 -2.9 -10.0 ATP phosphoribosyltransferase compare
PFLU_RS28385 -2.9 -13.8 homoserine O-acetyltransferase compare
PFLU_RS12980 -2.8 -9.3 nitrite/sulfite reductase compare
PFLU_RS12450 -2.8 -9.4 cyclic peptide export ABC transporter compare
PFLU_RS09055 -2.6 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS01625 -2.6 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS22070 -2.6 -3.5 phosphoribosylglycinamide formyltransferase compare
PFLU_RS06320 -2.6 -3.0 OmpH family outer membrane protein compare
PFLU_RS12975 -2.5 -4.9 DUF934 domain-containing protein compare
PFLU_RS25360 -2.5 -8.3 glutamate 5-kinase compare
PFLU_RS27630 -2.4 -3.3 dethiobiotin synthase compare
PFLU_RS23310 -2.4 -9.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS01900 -2.4 -6.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS19170 -2.3 -4.0 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS23305 -2.3 -10.4 arginine N-succinyltransferase compare
PFLU_RS02590 -2.3 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01610 -2.3 -9.8 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS29515 -2.3 -11.0 RidA family protein compare
PFLU_RS28325 -2.2 -7.1 energy transducer TonB compare
PFLU_RS07245 -2.2 -8.2 DegQ family serine endoprotease compare
PFLU_RS22740 -2.2 -3.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS28655 -2.1 -11.6 HAD family hydrolase compare
PFLU_RS24785 -2.1 -10.5 outer membrane protein assembly factor BamB compare
PFLU_RS27650 -2.1 -7.8 biotin synthase BioB compare
PFLU_RS28965 -2.1 -9.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS22105 -2.1 -5.1 cysteine synthase CysM compare
PFLU_RS30160 -2.0 -2.8 ParB/RepB/Spo0J family partition protein compare
PFLU_RS01955 -2.0 -7.0 DUF971 domain-containing protein compare
PFLU_RS25735 -2.0 -2.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS18530 -2.0 -3.7 DNA translocase FtsK compare
PFLU_RS07230 -2.0 -10.5 RNA polymerase sigma factor RpoE compare
PFLU_RS25715 -2.0 -8.0 RNA polymerase-binding protein DksA compare
PFLU_RS09980 -2.0 -13.7 peptidase S41 compare
PFLU_RS08505 -1.9 -8.0 protease HtpX compare
PFLU_RS08180 -1.9 -4.6 ketoacyl-ACP synthase III compare
PFLU_RS28195 -1.9 -8.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS24330 -1.9 -2.9 phosphogluconate dehydratase compare
PFLU_RS22095 -1.9 -13.5 GTP diphosphokinase compare
PFLU_RS24325 -1.9 -11.3 glucokinase compare
PFLU_RS00415 -1.9 -2.4 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25645 -1.9 -2.7 acetolactate synthase small subunit compare
PFLU_RS08410 -1.8 -7.9 HTH-type transcriptional regulator CysB compare
PFLU_RS29310 -1.8 -1.5 accessory factor UbiK family protein compare
PFLU_RS25955 -1.8 -1.3 hypothetical protein compare
PFLU_RS04220 -1.7 -7.8 FadR family transcriptional regulator compare
PFLU_RS07225 -1.7 -12.3 L-aspartate oxidase compare
PFLU_RS23725 -1.7 -5.3 glucose-6-phosphate dehydrogenase compare
PFLU_RS08165 -1.7 -1.9 acyl carrier protein compare
PFLU_RS26640 -1.7 -7.5 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS30165 -1.7 -6.9 ParA family protein compare
PFLU_RS27645 -1.7 -7.9 8-amino-7-oxononanoate synthase compare
PFLU_RS12445 -1.7 -11.1 TonB-dependent siderophore receptor compare
PFLU_RS26595 -1.7 -2.5 lipoprotein compare
PFLU_RS25760 -1.7 -2.3 glucose-6-phosphate isomerase compare
PFLU_RS20970 -1.7 -1.3 phytanoyl-CoA dioxygenase family protein compare
PFLU_RS17265 -1.7 -2.1 hypothetical protein compare
PFLU_RS13540 -1.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS01895 -1.6 -5.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS02980 -1.6 -2.2 precorrin-8X methylmutase compare
PFLU_RS30555 -1.6 -2.3 hypothetical protein compare
PFLU_RS22835 -1.6 -7.4 amidotransferase compare
PFLU_RS12395 -1.6 -3.5 zinc ribbon domain-containing protein compare
PFLU_RS22195 -1.6 -3.9 DEAD/DEAH box helicase compare
PFLU_RS06310 -1.6 -6.7 sigma E protease regulator RseP compare
PFLU_RS25750 -1.6 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS28650 -1.5 -4.8 RNA pyrophosphohydrolase compare
PFLU_RS04430 -1.5 -5.5 ATP-binding cassette domain-containing protein compare
PFLU_RS27475 -1.5 -4.2 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS27635 -1.5 -5.1 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS03610 -1.5 -4.2 redox-regulated ATPase YchF compare
PFLU_RS21300 -1.5 -4.0 cysteine hydrolase compare
PFLU_RS03665 -1.5 -4.9 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS18645 -1.5 -1.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS30530 -1.5 -5.6 acetyltransferase compare
PFLU_RS03770 -1.5 -9.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS13035 -1.5 -3.1 cobalamin biosynthesis protein CobW compare
PFLU_RS08185 -1.5 -6.4 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
PFLU_RS23745 -1.4 -6.6 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
PFLU_RS23755 -1.4 -9.0 sugar ABC transporter permease compare
PFLU_RS01020 -1.4 -3.4 LysR family transcriptional regulator compare
PFLU_RS26530 -1.4 -9.3 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFLU_RS26535 -1.4 -4.6 thiamine phosphate synthase compare
PFLU_RS07785 -1.4 -6.6 VacJ family lipoprotein compare
PFLU_RS23065 -1.4 -7.4 phosphate acyltransferase PlsX compare
PFLU_RS29550 -1.4 -3.8 ATP-dependent DNA helicase RecG compare
PFLU_RS30790 -1.4 -1.9 hypothetical protein compare
PFLU_RS23750 -1.4 -8.4 carbohydrate ABC transporter permease compare
PFLU_RS19720 -1.4 -2.6 hypothetical protein compare
PFLU_RS02365 -1.3 -7.5 glycosyltransferase compare
PFLU_RS09945 -1.3 -3.3 catalase family protein compare
PFLU_RS27375 -1.3 -4.3 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS25740 -1.3 -4.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS30525 -1.3 -6.2 SDR family oxidoreductase compare
PFLU_RS10340 -1.3 -0.8 hypothetical protein compare
PFLU_RS04440 -1.3 -5.9 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS04435 -1.3 -4.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS19160 -1.3 -6.1 endopeptidase La compare
PFLU_RS04445 -1.2 -4.3 ABC transporter substrate-binding protein compare
PFLU_RS03755 -1.2 -7.9 PDZ domain-containing protein compare
PFLU_RS18885 -1.2 -1.7 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS01965 -1.2 -1.1 ATP-dependent protease subunit HslV compare
PFLU_RS25730 -1.2 -7.9 PAS domain S-box protein compare
PFLU_RS03765 -1.2 -6.4 sulfate adenylyltransferase subunit CysD compare
PFLU_RS13825 -1.2 -2.1 hypothetical protein compare
PFLU_RS21495 -1.2 -1.9 TlpA family protein disulfide reductase compare
PFLU_RS02370 -1.2 -5.9 glycosyltransferase compare
PFLU_RS19915 -1.2 -1.7 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS04825 -1.2 -3.1 DUF1656 domain-containing protein compare
PFLU_RS25875 -1.2 -3.2 transcription elongation factor GreA compare
PFLU_RS02670 -1.2 -3.0 hypothetical protein compare
PFLU_RS01615 -1.2 -3.6 DUF2164 domain-containing protein compare
PFLU_RS03995 -1.1 -1.8 hypothetical protein compare
PFLU_RS09190 -1.1 -2.4 hypothetical protein compare
PFLU_RS15410 -1.1 -1.7 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS08125 -1.1 -2.1 integration host factor subunit beta compare
PFLU_RS24205 -1.1 -1.8 DNA binding protein compare
PFLU_RS22010 -1.1 -4.5 threonine-phosphate decarboxylase compare
PFLU_RS04315 -1.1 -2.7 rod shape-determining protein MreD compare
PFLU_RS14820 -1.1 -3.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS31710 -1.0 -2.4 hypothetical protein compare
PFLU_RS24255 -1.0 -5.9 pyruvate kinase compare
PFLU_RS24085 -1.0 -1.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS02430 -1.0 -7.3 phosphomethylpyrimidine synthase ThiC compare
PFLU_RS19935 -1.0 -1.7 type II secretion system protein GspF compare
PFLU_RS24335 -1.0 -6.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS04330 -1.0 -7.8 TIGR02099 family protein compare
PFLU_RS06205 -1.0 -2.9 cold-shock protein compare
PFLU_RS29490 -1.0 -5.0 ribonuclease PH compare
PFLU_RS07910 -1.0 -1.8 type 1 fimbrial protein compare
PFLU_RS14995 -1.0 -1.7 response regulator transcription factor compare
PFLU_RS21315 -1.0 -3.5 GTP cyclohydrolase I FolE compare
PFLU_RS29900 -1.0 -6.1 DNA helicase II compare
PFLU_RS01315 -1.0 -1.9 Hsp33 family molecular chaperone HslO compare
PFLU_RS02975 -1.0 -5.0 precorrin-3B synthase compare
PFLU_RS24125 -1.0 -2.5 cold-shock protein compare
PFLU_RS25815 -1.0 -1.7 transcription termination/antitermination protein NusA compare
PFLU_RS18615 -1.0 -1.3 NADH-quinone oxidoreductase subunit A compare
PFLU_RS02355 -1.0 -3.9 GNAT family N-acetyltransferase compare
PFLU_RS20290 -1.0 -1.3 integration host factor subunit alpha compare
PFLU_RS13350 -1.0 -1.3 ParD-like family protein compare
PFLU_RS19420 -1.0 -4.0 sigma-70 family RNA polymerase sigma factor compare
PFLU_RS11770 -1.0 -2.5 type 1 glutamine amidotransferase domain-containing protein compare
PFLU_RS20845 -1.0 -1.4 hypothetical protein compare
PFLU_RS01485 -1.0 -7.0 cellulase compare
PFLU_RS02565 -0.9 -2.0 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
PFLU_RS26635 -0.9 -3.9 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS01005 -0.9 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS07755 -0.9 -3.9 heavy metal sensor histidine kinase compare
PFLU_RS29290 -0.9 -2.4 hypothetical protein compare
PFLU_RS12725 -0.9 -2.0 GNAT family N-acetyltransferase compare
PFLU_RS31100 -0.9 -2.3 preprotein translocase subunit SecG compare
PFLU_RS17580 -0.9 -1.9 repressor LexA compare
PFLU_RS03870 -0.9 -3.9 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
PFLU_RS18550 -0.9 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFLU_RS22075 -0.9 -5.8 DUF3108 domain-containing protein compare
PFLU_RS06630 -0.9 -2.4 ABC transporter ATP-binding protein compare
PFLU_RS24320 -0.9 -3.1 response regulator transcription factor compare
PFLU_RS07685 -0.9 -2.4 transcriptional repressor LexA compare
PFLU_RS13205 -0.9 -2.4 DUF883 family protein compare
PFLU_RS18755 -0.9 -4.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS18740 -0.9 -0.6 Dyp-type peroxidase compare
PFLU_RS29760 -0.9 -5.7 phosphate ABC transporter permease PstA compare
PFLU_RS01285 -0.9 -1.2 HAMP domain-containing protein compare
PFLU_RS30510 -0.9 -2.7 glycosyltransferase family 4 protein compare
PFLU_RS23760 -0.9 -6.1 carbohydrate ABC transporter substrate-binding protein compare
PFLU_RS18735 -0.9 -1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in no stress control experiments

For no stress control D-Glucose across organisms