Experiment set13IT051 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS20350 -7.6 -7.0 amidophosphoribosyltransferase compare
BWI76_RS18935 -6.8 -9.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18940 -6.7 -6.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS25700 -6.6 -6.4 heavy metal-responsive transcriptional regulator compare
BWI76_RS04465 -6.4 -6.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS26425 -6.1 -8.3 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS18920 -6.1 -3.7 ATP phosphoribosyltransferase compare
BWI76_RS18925 -6.0 -6.9 histidinol dehydrogenase compare
BWI76_RS04470 -5.9 -8.1 carbamoyl phosphate synthase large subunit compare
BWI76_RS02995 -5.9 -9.0 aspartate carbamoyltransferase compare
BWI76_RS00855 -5.8 -10.5 argininosuccinate lyase compare
BWI76_RS26460 -5.8 -4.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS04250 -5.8 -8.9 homoserine kinase compare
BWI76_RS04255 -5.7 -11.5 threonine synthase compare
BWI76_RS08385 -5.6 -2.8 citrate (Si)-synthase compare
BWI76_RS21265 -5.5 -18.4 phosphoribosylformylglycinamidine synthase compare
BWI76_RS01615 -5.5 -11.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS27385 -5.5 -6.5 orotate phosphoribosyltransferase compare
BWI76_RS11965 -5.4 -4.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS18930 -5.4 -5.3 histidinol-phosphate transaminase compare
BWI76_RS00805 -5.4 -6.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS00845 -5.4 -12.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS20965 -5.3 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS11850 -5.2 -9.3 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS18950 -5.1 -6.2 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS20355 -5.1 -4.2 colicin V production protein compare
BWI76_RS00835 -5.1 -17.9 phosphoenolpyruvate carboxylase compare
BWI76_RS00850 -5.0 -11.3 acetylglutamate kinase compare
BWI76_RS01610 -5.0 -7.5 phosphoribosylamine--glycine ligase compare
BWI76_RS23365 -5.0 -3.8 LysR family transcriptional regulator compare
BWI76_RS25115 -4.9 -7.2 argininosuccinate synthase compare
BWI76_RS26455 -4.9 -2.1 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS11840 -4.9 -4.7 tryptophan synthase subunit alpha compare
BWI76_RS20895 -4.9 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00975 -4.8 -11.8 dihydroxy-acid dehydratase compare
BWI76_RS07070 -4.8 -3.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS07065 -4.7 -7.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS11860 -4.7 -11.0 anthranilate synthase component I compare
BWI76_RS23265 -4.7 -2.0 hypothetical protein compare
BWI76_RS00785 -4.6 -8.3 cystathionine gamma-synthase compare
BWI76_RS21475 -4.6 -3.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS22755 -4.5 -3.1 phosphoadenosine phosphosulfate reductase compare
BWI76_RS17975 -4.5 -4.7 tail-specific protease compare
BWI76_RS19840 -4.5 -1.4 hypothetical protein compare
BWI76_RS09910 -4.4 -16.3 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS17980 -4.4 -4.7 RNA chaperone ProQ compare
BWI76_RS04245 -4.4 -16.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS27390 -4.4 -7.5 ribonuclease PH compare
BWI76_RS23220 -4.3 -11.1 amino-acid N-acetyltransferase compare
BWI76_RS18955 -4.3 -6.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04160 -4.3 -2.9 phosphoserine phosphatase compare
BWI76_RS05015 -4.3 -2.6 transcriptional regulator compare
BWI76_RS05840 -4.3 -2.9 glutamate 5-kinase compare
BWI76_RS04240 -4.1 -2.3 thr operon leader peptide compare
BWI76_RS11845 -4.1 -1.3 tryptophan synthase subunit beta compare
BWI76_RS03010 -4.0 -7.6 ornithine carbamoyltransferase compare
BWI76_RS10990 -4.0 -1.9 dihydroorotase compare
BWI76_RS04665 -4.0 -22.0 3-isopropylmalate dehydratase small subunit compare
BWI76_RS04670 -4.0 -12.3 3-isopropylmalate dehydratase large subunit compare
BWI76_RS24285 -4.0 -12.4 cystathionine beta-lyase compare
BWI76_RS00990 -3.9 -16.2 ketol-acid reductoisomerase compare
BWI76_RS08535 -3.9 -2.0 translocation protein TolB compare
BWI76_RS01655 -3.8 -8.6 homoserine O-succinyltransferase compare
BWI76_RS04680 -3.8 -13.9 2-isopropylmalate synthase compare
BWI76_RS21070 -3.8 -1.9 outer membrane protein assembly factor BamB compare
BWI76_RS00965 -3.8 -1.1 acetolactate synthase 2 small subunit compare
BWI76_RS08525 -3.8 -2.8 colicin transporter compare
BWI76_RS09760 -3.8 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04685 -3.7 -11.2 putative leucine operon leader peptide compare
BWI76_RS09645 -3.7 -1.1 thioredoxin-disulfide reductase compare
BWI76_RS04525 -3.7 -1.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS25335 -3.7 -1.8 stringent starvation protein A compare
BWI76_RS00875 -3.7 -6.5 DNA-binding transcriptional regulator FabR compare
BWI76_RS26390 -3.6 -6.5 cell division protein FtsX compare
BWI76_RS20390 -3.6 -4.4 erythronate-4-phosphate dehydrogenase compare
BWI76_RS25280 -3.5 -1.5 RNase adaptor protein RapZ compare
BWI76_RS01095 -3.5 -2.5 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS01115 -3.5 -3.6 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS24340 -3.5 -9.5 two-component sensor histidine kinase compare
BWI76_RS25645 -3.5 -6.8 shikimate dehydrogenase compare
BWI76_RS11855 -3.5 -7.9 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS16965 -3.4 -2.9 murein lipoprotein compare
BWI76_RS05835 -3.4 -2.0 gamma-glutamyl-phosphate reductase compare
BWI76_RS08530 -3.4 -1.5 protein TolA compare
BWI76_RS08520 -3.3 -1.9 colicin transporter TolQ compare
BWI76_RS04675 -3.3 -5.1 3-isopropylmalate dehydrogenase compare
BWI76_RS26000 -3.3 -12.0 aspartate aminotransferase family protein compare
BWI76_RS23920 -3.3 -2.1 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS01275 -3.3 -10.1 LysR family transcriptional regulator compare
BWI76_RS21350 -3.2 -4.5 anti-RNA polymerase sigma factor SigE compare
BWI76_RS04845 -3.0 -7.4 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS26620 -3.0 -0.9 Fe-S biogenesis protein NfuA compare
BWI76_RS01800 -2.9 -2.0 glucose-6-phosphate isomerase compare
BWI76_RS04305 -2.9 -1.5 molecular chaperone DnaJ compare
BWI76_RS23360 -2.9 -1.6 diaminopimelate decarboxylase compare
BWI76_RS04645 -2.9 -3.8 3-dehydroquinase compare
BWI76_RS22765 -2.9 -8.0 sulfite reductase subunit alpha compare
BWI76_RS09755 -2.8 -3.8 phosphoserine transaminase compare
BWI76_RS06535 -2.8 -3.2 endopeptidase La compare
BWI76_RS02815 -2.8 -1.4 fructose-bisphosphatase class I compare
BWI76_RS26395 -2.7 -6.7 cell division protein FtsE compare
BWI76_RS00980 -2.7 -11.6 PLP-dependent threonine dehydratase compare
BWI76_RS09970 -2.6 -1.0 porin OmpA compare
BWI76_RS00720 -2.6 -2.0 DNA-binding response regulator compare
BWI76_RS15825 -2.6 -1.1 hypothetical protein compare
BWI76_RS01210 -2.6 -1.3 tyrosine recombinase XerC compare
BWI76_RS06525 -2.6 -3.7 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS21465 -2.6 -2.8 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS24605 -2.6 -5.3 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS06680 -2.6 -1.5 hypothetical protein compare
BWI76_RS01110 -2.5 -4.0 TDP-fucosamine acetyltransferase compare
BWI76_RS21165 -2.5 -1.7 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS08210 -2.5 -1.1 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS21345 -2.5 -2.9 sigma-E factor regulatory protein RseB compare
BWI76_RS24900 -2.5 -1.4 DeoR family transcriptional regulator compare
BWI76_RS24580 -2.4 -4.3 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS05260 -2.4 -1.2 chaperone compare
BWI76_RS01125 -2.3 -4.6 4-alpha-L-fucosyltransferase compare
BWI76_RS24740 -2.3 -3.1 GntR family transcriptional regulator compare
BWI76_RS10935 -2.3 -4.9 glucan biosynthesis glucosyltransferase H compare
BWI76_RS00400 -2.3 -1.2 glutamine synthetase compare
BWI76_RS23985 -2.3 -8.7 erythrose-4-phosphate dehydrogenase compare
BWI76_RS02735 -2.3 -3.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS05450 -2.3 -0.9 ribonuclease HI compare
BWI76_RS06530 -2.3 -4.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS27450 -2.2 -5.2 ferredoxin--NADP(+) reductase compare
BWI76_RS21360 -2.2 -9.0 L-aspartate oxidase compare
BWI76_RS08580 -2.2 -2.8 quinolinate synthetase compare
BWI76_RS20440 -2.1 -2.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS26570 -2.1 -2.0 anion permease compare
BWI76_RS07465 -2.1 -1.1 TetR family transcriptional regulator compare
BWI76_RS00355 -2.1 -2.1 DNA polymerase I compare
BWI76_RS27440 -2.1 -2.0 DNA helicase RecG compare
BWI76_RS00960 -2.1 -6.9 acetolactate synthase 2 catalytic subunit compare
BWI76_RS21370 -2.1 -0.8 ATP-dependent RNA helicase SrmB compare
BWI76_RS00345 -2.1 -4.4 protein disulfide oxidoreductase DsbA compare
BWI76_RS19770 -2.1 -1.5 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS25300 -2.1 -3.5 hybrid sensor histidine kinase/response regulator compare
BWI76_RS15635 -2.1 -5.2 hypothetical protein compare
BWI76_RS24075 -2.0 -3.3 glutathione synthase compare
BWI76_RS22760 -2.0 -5.7 sulfite reductase subunit beta compare
BWI76_RS22805 -2.0 -8.7 GTP diphosphokinase compare
BWI76_RS24595 -2.0 -2.0 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS01135 -2.0 -4.3 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS17720 -2.0 -0.6 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS12070 -2.0 -1.3 hypothetical protein compare
BWI76_RS09640 -1.9 -1.8 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS08760 -1.9 -5.5 biotin synthase compare
BWI76_RS23490 -1.9 -5.4 fimbrial protein compare
BWI76_RS01540 -1.8 -2.2 thiamine biosynthesis protein ThiS compare
BWI76_RS09655 -1.8 -4.0 leucine-responsive regulatory protein compare
BWI76_RS11610 -1.8 -1.3 glutamate dehydrogenase compare
BWI76_RS01080 -1.8 -5.9 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS25060 -1.8 -3.9 lipoprotein NlpI compare
BWI76_RS26730 -1.8 -6.9 inner membrane protein YhjD compare
BWI76_RS01385 -1.8 -2.0 potassium transporter compare
BWI76_RS04270 -1.8 -3.6 transaldolase compare
BWI76_RS15110 -1.8 -4.5 putative excinuclease ABC subunit A compare
BWI76_RS24600 -1.7 -2.7 dihydroxyacetone kinase compare
BWI76_RS07185 -1.7 -1.1 hypothetical protein compare
BWI76_RS02530 -1.7 -1.1 tRNA dimethylallyltransferase compare
BWI76_RS26665 -1.7 -2.7 DNA-binding response regulator compare
BWI76_RS11980 -1.7 -1.1 DeoR family transcriptional regulator compare
BWI76_RS08495 -1.7 -3.5 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS21010 -1.7 -5.3 Negative regulator of nickel and cobalt uptake (YfgG) (from data) compare
BWI76_RS01900 -1.7 -3.1 tRNA-dihydrouridine synthase A compare
BWI76_RS21580 -1.7 -0.8 SsrA-binding protein compare
BWI76_RS21450 -1.6 -1.8 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS25070 -1.6 -1.2 hypothetical protein compare
BWI76_RS01220 -1.6 -3.8 DNA-dependent helicase II compare
BWI76_RS26055 -1.6 -5.8 siroheme synthase compare
BWI76_RS25315 -1.6 -9.9 glutamate synthase large subunit compare
BWI76_RS26670 -1.6 -6.4 two-component sensor histidine kinase compare
BWI76_RS19845 -1.6 -5.0 phosphatase compare
BWI76_RS10305 -1.6 -5.1 transposase compare
BWI76_RS09825 -1.6 -4.4 envelope biogenesis factor ElyC compare
BWI76_RS19685 -1.6 -3.2 lysine transporter compare
BWI76_RS15965 -1.5 -5.4 MFS transporter compare
BWI76_RS19905 -1.5 -2.4 OmpK36 porin compare
BWI76_RS00755 -1.5 -3.0 ATP-dependent protease subunit HslV compare
BWI76_RS26075 -1.5 -1.0 DNA adenine methylase compare
BWI76_RS16355 -1.5 -2.0 electron transport complex subunit A compare
BWI76_RS11520 -1.5 -1.2 hypothetical protein compare
BWI76_RS11300 -1.5 -0.9 cupin compare
BWI76_RS16635 -1.5 -4.8 carbonate dehydratase compare
BWI76_RS20380 -1.5 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS09615 -1.5 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS27235 -1.5 -8.5 murein hydrolase activator EnvC compare
BWI76_RS21075 -1.5 -1.4 membrane protein compare
BWI76_RS09200 -1.5 -6.0 hypothetical protein compare
BWI76_RS10700 -1.5 -3.2 XRE family transcriptional regulator compare
BWI76_RS01105 -1.5 -3.7 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS02550 -1.5 -3.5 protease modulator HflC compare
BWI76_RS13560 -1.5 -0.7 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS00715 -1.5 -1.4 two-component sensor histidine kinase compare
BWI76_RS15360 -1.5 -2.2 hypothetical protein compare
BWI76_RS20280 -1.4 -4.3 phosphodiesterase compare
BWI76_RS07730 -1.4 -0.8 iron-enterobactin transporter membrane protein compare
BWI76_RS02340 -1.4 -3.3 membrane protein FxsA compare
BWI76_RS09190 -1.4 -2.1 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^4 spores/mL across organisms