Experiment set13IT051 for Herbaspirillum seropedicae SmR1

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
HSERO_RS17110 -5.6 -3.8 ribonuclease H compare
HSERO_RS16475 -4.8 -2.8 tryptophan synthase subunit alpha compare
HSERO_RS15070 -3.3 -1.4 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS02330 -3.3 -9.1 aspartate carbamoyltransferase compare
HSERO_RS17980 -2.9 -3.2 GTP-binding protein compare
HSERO_RS19450 -2.8 -5.0 indole-3-glycerol-phosphate synthase compare
HSERO_RS19805 -2.8 -5.0 glycosyl transferase compare
HSERO_RS12920 -2.6 -1.4 trigger factor compare
HSERO_RS16480 -2.6 -6.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS19630 -2.2 -0.9 AMP nucleosidase compare
HSERO_RS02325 -2.2 -7.1 uracil phosphoribosyltransferase compare
HSERO_RS17105 -2.2 -1.9 DNA polymerase III subunit epsilon compare
HSERO_RS20920 -2.2 -6.5 3-dehydroquinate synthase compare
HSERO_RS02340 -2.1 -14.1 dihydroorotase compare
HSERO_RS19590 -2.0 -1.5 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS02215 -1.9 -0.8 D-arabinitol 4-dehydrogenase compare
HSERO_RS12975 -1.9 -2.4 phytoene synthase compare
HSERO_RS09720 -1.8 -3.8 membrane protein compare
HSERO_RS18010 -1.8 -0.9 pseudouridine synthase compare
HSERO_RS03875 -1.8 -1.2 hypothetical protein compare
HSERO_RS19445 -1.8 -8.1 anthranilate phosphoribosyltransferase compare
HSERO_RS19595 -1.7 -10.9 glutamate synthase compare
HSERO_RS05910 -1.7 -2.9 phosphoribosylglycinamide formyltransferase compare
HSERO_RS16470 -1.7 -1.2 tryptophan synthase subunit alpha compare
HSERO_RS09725 -1.7 -6.4 ABC transporter compare
HSERO_RS01935 -1.6 -6.6 3-dehydroquinate dehydratase compare
HSERO_RS23655 -1.5 -2.2 phosphonate ABC transporter permease compare
HSERO_RS11595 -1.5 -2.0 ArsR family transcriptional regulator compare
HSERO_RS09730 -1.5 -3.6 glycoside hydrolase family 43 compare
HSERO_RS19435 -1.5 -8.1 anthranilate synthase subunit I compare
HSERO_RS13265 -1.5 -2.5 G3E family GTPase compare
HSERO_RS02260 -1.5 -3.0 DNA polymerase I compare
HSERO_RS09745 -1.4 -1.9 chemotaxis protein CheY compare
HSERO_RS10460 -1.4 -1.3 homoserine dehydrogenase compare
HSERO_RS07160 -1.4 -3.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS02245 -1.3 -2.6 hypothetical protein compare
HSERO_RS02650 -1.3 -4.4 dihydroxy-acid dehydratase compare
HSERO_RS21480 -1.3 -0.7 transcriptional regulator compare
HSERO_RS16885 -1.2 -0.5 magnesium-transporting ATPase compare
HSERO_RS23945 -1.2 -1.9 cobyric acid synthase CobQ compare
HSERO_RS09735 -1.2 -3.0 hypothetical protein compare
HSERO_RS20985 -1.2 -1.4 serine acetyltransferase compare
HSERO_RS15575 -1.2 -1.2 uroporphyrin-III C-methyltransferase compare
HSERO_RS08075 -1.2 -1.4 ferredoxin compare
HSERO_RS00430 -1.2 -1.3 glutamate--cysteine ligase compare
HSERO_RS15835 -1.2 -1.3 aspartate aminotransferase compare
HSERO_RS05440 -1.1 -1.5 hypothetical protein compare
HSERO_RS09455 -1.1 -2.5 NAD synthetase compare
HSERO_RS08115 -1.1 -0.9 acyl-CoA-binding protein compare
HSERO_RS13320 -1.0 -3.3 membrane protein compare
HSERO_RS19785 -1.0 -2.5 sensor histidine kinase compare
HSERO_RS05515 -1.0 -0.4 glucose-6-phosphate isomerase compare
HSERO_RS21035 -1.0 -2.6 hypothetical protein compare
HSERO_RS15550 -1.0 -2.0 sulfite reductase compare
HSERO_RS21475 -1.0 -1.4 recombinase XerC compare
HSERO_RS08650 -1.0 -5.3 acetolactate synthase compare
HSERO_RS13960 -0.9 -2.4 hypothetical protein compare
HSERO_RS09660 -0.9 -1.7 ribonuclease III compare
HSERO_RS23950 -0.9 -1.8 amino acid transporter LysE compare
HSERO_RS16055 -0.9 -2.4 cytochrome oxidase subunit I compare
HSERO_RS20980 -0.9 -3.5 oxidoreductase compare
HSERO_RS07300 -0.9 -2.2 glutamate--cysteine ligase compare
HSERO_RS11835 -0.8 -2.8 hypothetical protein compare
HSERO_RS21375 -0.8 -1.6 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS03270 -0.8 -1.9 protein RecA compare
HSERO_RS08640 -0.8 -1.5 hypothetical protein compare
HSERO_RS22285 -0.8 -1.4 GntR family transcriptional regulator compare
HSERO_RS09640 -0.8 -1.9 peptidase compare
HSERO_RS17900 -0.8 -1.4 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS21060 -0.8 -3.6 hypothetical protein compare
HSERO_RS07255 -0.8 -1.9 glutaminase compare
HSERO_RS13295 -0.8 -2.2 membrane protein compare
HSERO_RS02560 -0.8 -1.9 hypothetical protein compare
HSERO_RS18685 -0.8 -1.0 hypothetical protein compare
HSERO_RS09740 -0.8 -2.9 histidine kinase compare
HSERO_RS08605 -0.8 -1.6 Hsp33 chaperonin compare
HSERO_RS07600 -0.8 -2.5 threonine-phosphate decarboxylase compare
HSERO_RS13660 -0.8 -1.5 membrane protein compare
HSERO_RS14950 -0.8 -2.1 purine-binding chemotaxis protein compare
HSERO_RS13280 -0.8 -1.2 precorrin-4 C11-methyltransferase compare
HSERO_RS11855 -0.8 -1.2 hypothetical protein compare
HSERO_RS03340 -0.8 -3.8 branched-chain amino acid transporter compare
HSERO_RS04875 -0.8 -4.3 glycerol kinase compare
HSERO_RS06145 -0.8 -0.8 NrdR family transcriptional regulator compare
HSERO_RS21005 -0.8 -3.9 asparagine synthase compare
HSERO_RS01365 -0.7 -1.9 TetR family transcriptional regulator compare
HSERO_RS10805 -0.7 -1.0 succinyldiaminopimelate aminotransferase compare
HSERO_RS13270 -0.7 -3.3 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS17815 -0.7 -0.5 glycosyl transferase compare
HSERO_RS04325 -0.7 -2.2 helicase I compare
HSERO_RS11345 -0.7 -1.3 hypothetical protein compare
HSERO_RS15560 -0.7 -2.8 phosphoadenosine phosphosulfate reductase compare
HSERO_RS03880 -0.7 -1.0 hypothetical protein compare
HSERO_RS05460 -0.7 -2.9 LacI family transcription regulator compare
HSERO_RS04545 -0.7 -1.7 integrase compare
HSERO_RS07110 -0.7 -2.6 16S rRNA methyltransferase compare
HSERO_RS04135 -0.7 -1.5 amidohydrolase compare
HSERO_RS10395 -0.7 -1.4 phosphate transport regulator compare
HSERO_RS21055 -0.7 -3.3 hypothetical protein compare
HSERO_RS10720 -0.7 -2.0 alanine acetyltransferase compare
HSERO_RS01870 -0.7 -2.9 ABC transporter permease compare
HSERO_RS00460 -0.7 -2.3 methionine biosynthesis protein MetW compare
HSERO_RS01815 -0.7 -2.7 gamma-glutamyl kinase compare
HSERO_RS01990 -0.7 -3.8 shikimate 5-dehydrogenase compare
HSERO_RS11430 -0.7 -2.1 GntR family transcriptional regulator compare
HSERO_RS22205 -0.7 -1.4 L-rhamnose mutarotase compare
HSERO_RS01095 -0.7 -2.0 hypothetical protein compare
HSERO_RS21230 -0.7 -2.4 GntR family transcriptional regulator compare
HSERO_RS19835 -0.7 -2.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS21990 -0.7 -1.1 hypothetical protein compare
HSERO_RS16450 -0.7 -0.9 colicin V production protein compare
HSERO_RS18610 -0.7 -2.2 phosphotransferase compare
HSERO_RS00725 -0.6 -2.2 LysR family transcriptional regulator compare
HSERO_RS10400 -0.6 -3.0 inorganic phosphate transporter compare
HSERO_RS16075 -0.6 -0.7 coproporphyrinogen III oxidase compare
HSERO_RS03635 -0.6 -1.5 D-mannose ABC transporter, substrate-binding component (from data) compare
HSERO_RS14930 -0.6 -1.9 aldolase compare
HSERO_RS02315 -0.6 -1.8 transcriptional regulator compare
HSERO_RS20315 -0.6 -2.1 imidazole glycerol phosphate synthase compare
HSERO_RS08035 -0.6 -1.5 GCN5 family N-acetyltransferase compare
HSERO_RS18015 -0.6 -1.0 transcriptional regulator compare
HSERO_RS10730 -0.6 -2.0 hypothetical protein compare
HSERO_RS04845 -0.6 -2.2 ABC transporter compare
HSERO_RS09245 -0.6 -1.5 carboxylesterase compare
HSERO_RS04105 -0.6 -2.2 hypothetical protein compare
HSERO_RS20310 -0.6 -2.8 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS09255 -0.6 -0.8 molybdenum cofactor biosynthesis protein MogA compare
HSERO_RS12015 -0.6 -0.7 molecular chaperone DnaK compare
HSERO_RS21945 -0.6 -1.2 hypothetical protein compare
HSERO_RS07970 -0.6 -1.3 formyltetrahydrofolate deformylase compare
HSERO_RS20260 -0.6 -1.7 2-alkenal reductase compare
HSERO_RS13315 -0.6 -0.8 ferredoxin compare
HSERO_RS14745 -0.6 -2.0 nicotinate phosphoribosyltransferase compare
HSERO_RS03060 -0.6 -1.6 DNA repair protein compare
HSERO_RS22040 -0.6 -2.0 CDP-glucose 4,6-dehydratase compare
HSERO_RS16040 -0.6 -1.1 cytochrome CBB3 compare
HSERO_RS20325 -0.6 -2.8 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS20405 -0.6 -1.5 GTP-binding protein YchF compare
HSERO_RS08030 -0.6 -1.7 von Willebrand factor A compare
HSERO_RS02160 -0.6 -0.5 DNA-dependent helicase compare
HSERO_RS14935 -0.6 -1.0 hypothetical protein compare
HSERO_RS01145 -0.6 -1.6 inner membrane protein compare
HSERO_RS05900 -0.6 -2.1 ribonuclease compare
HSERO_RS04330 -0.6 -2.6 ATP-dependent exonuclease compare
HSERO_RS02470 -0.5 -2.6 tRNA (guanine-N7)-methyltransferase compare
HSERO_RS13520 -0.5 -1.2 hypothetical protein compare
HSERO_RS18045 -0.5 -0.7 hypothetical protein compare
HSERO_RS14835 -0.5 -2.1 peptidase M23 compare
HSERO_RS15015 -0.5 -2.1 ATP-binding protein compare
HSERO_RS02775 -0.5 -1.0 hypothetical protein compare
HSERO_RS09555 -0.5 -2.7 LacI family transcription regulator compare
HSERO_RS10350 -0.5 -1.4 flagellin compare
HSERO_RS20775 -0.5 -0.9 membrane protein compare
HSERO_RS13310 -0.5 -2.8 cobaltochelatase compare
HSERO_RS10455 -0.5 -2.4 aminotransferase compare
HSERO_RS23880 -0.5 -2.6 hypothetical protein compare
HSERO_RS14625 -0.5 -1.8 methyl-accepting chemotaxis protein compare
HSERO_RS20330 -0.5 -1.8 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS21525 -0.5 -1.8 alpha/beta hydrolase compare
HSERO_RS23705 -0.5 -3.4 hydrogenase compare
HSERO_RS12630 -0.5 -1.5 chemotaxis protein CheY compare
HSERO_RS20320 -0.5 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS20345 -0.5 -2.8 histidinol dehydrogenase compare
HSERO_RS21025 -0.5 -1.9 hypothetical protein compare
HSERO_RS09435 -0.5 -1.2 S-adenosylmethionine-dependent methyltransferase compare
HSERO_RS12395 -0.5 -2.6 TetR family transcriptional regulator compare
HSERO_RS13240 -0.5 -2.1 cobalamin biosynthesis protein CobD compare
HSERO_RS09855 -0.5 -0.8 GTP pyrophosphokinase compare
HSERO_RS18860 -0.5 -2.2 potassium-transporting ATPase subunit C compare
HSERO_RS03825 -0.5 -2.5 hypothetical protein compare
HSERO_RS06655 -0.5 -0.5 hypothetical protein compare
HSERO_RS14695 -0.5 -2.5 ABC transporter permease compare
HSERO_RS04850 -0.5 -2.1 ABC transporter ATP-binding protein compare
HSERO_RS04860 -0.5 -0.8 sugar ABC transporter permease compare
HSERO_RS15665 -0.5 -0.4 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS23975 -0.5 -3.0 ABC transporter permease compare
HSERO_RS09290 -0.5 -1.8 ribonuclease R compare
HSERO_RS02180 -0.5 -1.4 fructokinase compare
HSERO_RS20990 -0.5 -2.1 aminotransferase DegT compare
HSERO_RS22695 -0.5 -1.3 GntR family transcriptional regulator compare
HSERO_RS09205 -0.5 -1.0 glutathione ABC transporter permease compare
HSERO_RS12770 -0.5 -0.6 3-oxoacyl-ACP reductase compare
HSERO_RS06165 -0.5 -2.2 ATP-dependent DNA helicase RecG compare
HSERO_RS14790 -0.5 -1.4 membrane protein compare
HSERO_RS17985 -0.5 -2.1 tRNA pseudouridine synthase B compare
HSERO_RS09775 -0.5 -0.9 cobalamin synthase compare
HSERO_RS01245 -0.5 -0.7 hypothetical protein compare
HSERO_RS10340 -0.5 -1.9 flagellar biosynthesis protein FliS compare
HSERO_RS05780 -0.5 -1.5 transcriptional regulator compare
HSERO_RS13255 -0.5 -1.3 cobyrinic acid a,c-diamide synthase compare
HSERO_RS16200 -0.5 -1.4 hypothetical protein compare
HSERO_RS19455 -0.5 -2.2 3-ketoacyl-ACP reductase compare
HSERO_RS08530 -0.5 -2.1 glycine/betaine ABC transporter permease compare
HSERO_RS05970 -0.5 -0.8 ABC transporter compare
HSERO_RS21080 -0.5 -2.3 glycosyl transferase compare
HSERO_RS04170 -0.5 -0.9 hypothetical protein compare
HSERO_RS02095 -0.5 -0.9 Holliday junction DNA helicase RuvB compare
HSERO_RS04045 -0.5 -1.1 pilus assembly protein compare
HSERO_RS12690 -0.5 -1.1 transcriptional regulator compare
HSERO_RS09525 -0.5 -2.1 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms