Experiment set13IT050 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -7.5 -4.7 histidinol-phosphate transaminase compare
BWI76_RS18935 -7.2 -7.8 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18955 -7.1 -4.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS07065 -7.0 -7.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20965 -6.7 -3.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS18940 -6.6 -5.8 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS11965 -6.4 -4.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS21265 -6.3 -15.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS01115 -6.2 -2.8 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS18920 -6.0 -3.3 ATP phosphoribosyltransferase compare
BWI76_RS20350 -6.0 -7.6 amidophosphoribosyltransferase compare
BWI76_RS04465 -6.0 -6.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS01095 -5.9 -2.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS11850 -5.8 -11.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS04470 -5.8 -7.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS02995 -5.8 -8.8 aspartate carbamoyltransferase compare
BWI76_RS01615 -5.7 -10.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS23220 -5.7 -9.9 amino-acid N-acetyltransferase compare
BWI76_RS26460 -5.7 -3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS18925 -5.6 -3.6 histidinol dehydrogenase compare
BWI76_RS08385 -5.6 -2.5 citrate (Si)-synthase compare
BWI76_RS26425 -5.5 -8.1 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS04255 -5.4 -12.5 threonine synthase compare
BWI76_RS20895 -5.4 -5.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04245 -5.3 -17.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS01610 -5.3 -9.1 phosphoribosylamine--glycine ligase compare
BWI76_RS00855 -5.1 -11.3 argininosuccinate lyase compare
BWI76_RS27385 -5.0 -6.9 orotate phosphoribosyltransferase compare
BWI76_RS25700 -5.0 -6.2 heavy metal-responsive transcriptional regulator compare
BWI76_RS11840 -5.0 -4.4 tryptophan synthase subunit alpha compare
BWI76_RS18950 -4.9 -3.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04250 -4.9 -8.1 homoserine kinase compare
BWI76_RS11855 -4.9 -9.0 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS23365 -4.9 -3.4 LysR family transcriptional regulator compare
BWI76_RS26455 -4.8 -1.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS00850 -4.7 -9.7 acetylglutamate kinase compare
BWI76_RS00835 -4.7 -14.6 phosphoenolpyruvate carboxylase compare
BWI76_RS09910 -4.6 -16.9 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS21350 -4.6 -4.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS21475 -4.6 -3.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS23265 -4.6 -1.8 hypothetical protein compare
BWI76_RS00845 -4.6 -13.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS04670 -4.5 -13.5 3-isopropylmalate dehydratase large subunit compare
BWI76_RS02735 -4.5 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS00990 -4.5 -12.9 ketol-acid reductoisomerase compare
BWI76_RS03010 -4.5 -7.7 ornithine carbamoyltransferase compare
BWI76_RS07070 -4.5 -3.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS19840 -4.5 -1.2 hypothetical protein compare
BWI76_RS20355 -4.4 -4.2 colicin V production protein compare
BWI76_RS00975 -4.4 -11.2 dihydroxy-acid dehydratase compare
BWI76_RS11860 -4.4 -10.1 anthranilate synthase component I compare
BWI76_RS08525 -4.4 -2.0 colicin transporter compare
BWI76_RS04665 -4.4 -20.9 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01655 -4.3 -10.3 homoserine O-succinyltransferase compare
BWI76_RS00875 -4.3 -5.1 DNA-binding transcriptional regulator FabR compare
BWI76_RS04675 -4.3 -8.1 3-isopropylmalate dehydrogenase compare
BWI76_RS00980 -4.3 -13.7 PLP-dependent threonine dehydratase compare
BWI76_RS16965 -4.3 -2.3 murein lipoprotein compare
BWI76_RS26000 -4.2 -11.1 aspartate aminotransferase family protein compare
BWI76_RS05015 -4.2 -2.3 transcriptional regulator compare
BWI76_RS05260 -4.2 -1.1 chaperone compare
BWI76_RS04160 -4.2 -2.9 phosphoserine phosphatase compare
BWI76_RS05840 -4.2 -2.9 glutamate 5-kinase compare
BWI76_RS17980 -4.1 -5.6 RNA chaperone ProQ compare
BWI76_RS25115 -4.1 -9.5 argininosuccinate synthase compare
BWI76_RS08520 -4.1 -1.9 colicin transporter TolQ compare
BWI76_RS04685 -4.1 -12.2 putative leucine operon leader peptide compare
BWI76_RS25645 -4.1 -6.2 shikimate dehydrogenase compare
BWI76_RS04240 -4.1 -2.0 thr operon leader peptide compare
BWI76_RS16425 -4.1 -3.0 hypothetical protein compare
BWI76_RS09760 -4.0 -3.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS00785 -4.0 -7.7 cystathionine gamma-synthase compare
BWI76_RS20390 -4.0 -4.6 erythronate-4-phosphate dehydrogenase compare
BWI76_RS04845 -4.0 -8.0 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS11845 -4.0 -2.0 tryptophan synthase subunit beta compare
BWI76_RS27390 -4.0 -6.5 ribonuclease PH compare
BWI76_RS08535 -3.8 -1.8 translocation protein TolB compare
BWI76_RS21070 -3.8 -1.7 outer membrane protein assembly factor BamB compare
BWI76_RS01125 -3.7 -6.5 4-alpha-L-fucosyltransferase compare
BWI76_RS00965 -3.7 -1.0 acetolactate synthase 2 small subunit compare
BWI76_RS04680 -3.6 -11.8 2-isopropylmalate synthase compare
BWI76_RS09645 -3.6 -1.0 thioredoxin-disulfide reductase compare
BWI76_RS22765 -3.6 -11.3 sulfite reductase subunit alpha compare
BWI76_RS25335 -3.5 -1.6 stringent starvation protein A compare
BWI76_RS22755 -3.5 -4.1 phosphoadenosine phosphosulfate reductase compare
BWI76_RS21345 -3.5 -2.8 sigma-E factor regulatory protein RseB compare
BWI76_RS08580 -3.5 -4.4 quinolinate synthetase compare
BWI76_RS24285 -3.4 -9.4 cystathionine beta-lyase compare
BWI76_RS13560 -3.4 -0.9 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS26390 -3.4 -8.1 cell division protein FtsX compare
BWI76_RS04645 -3.4 -3.3 3-dehydroquinase compare
BWI76_RS17975 -3.4 -5.0 tail-specific protease compare
BWI76_RS10990 -3.4 -2.6 dihydroorotase compare
BWI76_RS08530 -3.4 -1.3 protein TolA compare
BWI76_RS24595 -3.4 -4.3 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS20380 -3.4 -0.9 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS09755 -3.3 -2.3 phosphoserine transaminase compare
BWI76_RS22760 -3.3 -6.8 sulfite reductase subunit beta compare
BWI76_RS05835 -3.3 -1.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS12090 -3.3 -1.7 HNH endonuclease compare
BWI76_RS01275 -3.2 -9.6 LysR family transcriptional regulator compare
BWI76_RS23985 -3.2 -7.5 erythrose-4-phosphate dehydrogenase compare
BWI76_RS26395 -3.2 -6.0 cell division protein FtsE compare
BWI76_RS23920 -3.2 -1.8 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS06535 -3.2 -2.2 endopeptidase La compare
BWI76_RS01110 -3.1 -6.1 TDP-fucosamine acetyltransferase compare
BWI76_RS26570 -3.1 -2.1 anion permease compare
BWI76_RS21465 -3.0 -4.0 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS06525 -3.0 -4.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS27450 -2.9 -6.8 ferredoxin--NADP(+) reductase compare
BWI76_RS08760 -2.9 -7.7 biotin synthase compare
BWI76_RS00960 -2.9 -8.7 acetolactate synthase 2 catalytic subunit compare
BWI76_RS01800 -2.9 -2.0 glucose-6-phosphate isomerase compare
BWI76_RS25300 -2.8 -2.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS21360 -2.8 -6.1 L-aspartate oxidase compare
BWI76_RS23360 -2.8 -1.4 diaminopimelate decarboxylase compare
BWI76_RS25280 -2.8 -1.3 RNase adaptor protein RapZ compare
BWI76_RS15825 -2.7 -1.0 hypothetical protein compare
BWI76_RS24340 -2.7 -6.5 two-component sensor histidine kinase compare
BWI76_RS09335 -2.7 -1.0 baseplate assembly protein W compare
BWI76_RS09655 -2.6 -4.1 leucine-responsive regulatory protein compare
BWI76_RS25285 -2.6 -1.2 HPr family phosphocarrier protein compare
BWI76_RS00805 -2.6 -5.9 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS09970 -2.6 -0.9 porin OmpA compare
BWI76_RS01900 -2.5 -6.1 tRNA-dihydrouridine synthase A compare
BWI76_RS08210 -2.5 -0.9 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS22690 -2.5 -1.4 adenylyl-sulfate kinase compare
BWI76_RS20970 -2.5 -2.0 phosphoribosylglycinamide formyltransferase compare
BWI76_RS00720 -2.5 -1.7 DNA-binding response regulator compare
BWI76_RS07465 -2.5 -0.8 TetR family transcriptional regulator compare
BWI76_RS01210 -2.5 -1.1 tyrosine recombinase XerC compare
BWI76_RS21075 -2.4 -1.5 membrane protein compare
BWI76_RS20720 -2.4 -1.2 hypothetical protein compare
BWI76_RS15845 -2.3 -0.9 hypothetical protein compare
BWI76_RS24900 -2.3 -1.2 DeoR family transcriptional regulator compare
BWI76_RS26670 -2.3 -7.2 two-component sensor histidine kinase compare
BWI76_RS24605 -2.3 -5.2 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS15965 -2.3 -4.8 MFS transporter compare
BWI76_RS01170 -2.3 -3.4 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS22805 -2.3 -8.0 GTP diphosphokinase compare
BWI76_RS08605 -2.3 -1.9 phosphoglyceromutase compare
BWI76_RS27440 -2.3 -1.5 DNA helicase RecG compare
BWI76_RS05450 -2.2 -0.8 ribonuclease HI compare
BWI76_RS01080 -2.2 -7.8 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS01545 -2.2 -5.2 thiamine biosynthesis protein ThiS compare
BWI76_RS07820 -2.2 -1.5 S-methyl-5-thioribose kinase compare
BWI76_RS15110 -2.2 -2.6 putative excinuclease ABC subunit A compare
BWI76_RS24580 -2.2 -2.8 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS00400 -2.2 -1.0 glutamine synthetase compare
BWI76_RS01135 -2.2 -4.5 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS06680 -2.1 -1.2 hypothetical protein compare
BWI76_RS06530 -2.1 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS08495 -2.1 -4.0 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS21370 -2.1 -0.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS12070 -2.0 -1.2 hypothetical protein compare
BWI76_RS17720 -2.0 -0.5 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS10475 -2.0 -5.9 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS20440 -2.0 -2.3 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS22090 -2.0 -1.5 transcriptional regulator compare
BWI76_RS00355 -2.0 -1.7 DNA polymerase I compare
BWI76_RS17805 -2.0 -1.4 membrane protein compare
BWI76_RS20640 -2.0 -3.9 cysteine synthase A compare
BWI76_RS00240 -2.0 -1.0 FMN-binding protein MioC compare
BWI76_RS01220 -2.0 -4.5 DNA-dependent helicase II compare
BWI76_RS24600 -2.0 -2.4 dihydroxyacetone kinase compare
BWI76_RS08500 -1.9 -1.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS09190 -1.9 -1.3 hypothetical protein compare
BWI76_RS25065 -1.9 -3.3 polyribonucleotide nucleotidyltransferase compare
BWI76_RS25315 -1.9 -8.9 glutamate synthase large subunit compare
BWI76_RS19685 -1.9 -3.2 lysine transporter compare
BWI76_RS10305 -1.9 -6.0 transposase compare
BWI76_RS19845 -1.9 -4.6 phosphatase compare
BWI76_RS02340 -1.9 -3.7 membrane protein FxsA compare
BWI76_RS12205 -1.9 -3.9 hypothetical protein compare
BWI76_RS02550 -1.9 -3.2 protease modulator HflC compare
BWI76_RS27780 -1.9 -2.1 hypothetical protein compare
BWI76_RS16315 -1.9 -0.6 SirA-like protein compare
BWI76_RS26730 -1.8 -3.2 inner membrane protein YhjD compare
BWI76_RS19905 -1.8 -3.1 OmpK36 porin compare
BWI76_RS21165 -1.8 -1.3 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS13545 -1.8 -1.1 N-acetyltransferase compare
BWI76_RS21565 -1.8 -0.8 outer membrane protein assembly factor BamE compare
BWI76_RS20750 -1.8 -0.8 carboxysome structural protein EutK compare
BWI76_RS21010 -1.7 -4.1 Negative regulator of nickel and cobalt uptake (YfgG) (from data) compare
BWI76_RS21460 -1.7 -1.0 translation inhibitor protein RaiA compare
BWI76_RS16635 -1.7 -3.1 carbonate dehydratase compare
BWI76_RS27915 -1.7 -1.7 YceK/YidQ family lipoprotein compare
BWI76_RS21810 -1.7 -1.4 universal stress protein compare
BWI76_RS01540 -1.7 -2.0 thiamine biosynthesis protein ThiS compare
BWI76_RS08795 -1.7 -5.3 DNA-binding response regulator compare
BWI76_RS21450 -1.7 -1.1 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS12265 -1.6 -6.0 hypothetical protein compare
BWI76_RS02545 -1.6 -4.6 protease modulator HflK compare
BWI76_RS08040 -1.6 -1.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS02530 -1.6 -0.9 tRNA dimethylallyltransferase compare
BWI76_RS26055 -1.6 -7.0 siroheme synthase compare
BWI76_RS10700 -1.6 -3.6 XRE family transcriptional regulator compare
BWI76_RS01385 -1.6 -1.9 potassium transporter compare
BWI76_RS19035 -1.6 -6.4 dTDP-rhamnosyl transferase compare
BWI76_RS21580 -1.6 -0.7 SsrA-binding protein compare


Specific Phenotypes

For 10 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^5 spores/mL across organisms