Experiment set13IT049 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1 1x with Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -8.8 -3.2 histidinol-phosphate transaminase compare
BWI76_RS04250 -8.0 -5.0 homoserine kinase compare
BWI76_RS18940 -8.0 -3.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS23220 -8.0 -5.2 amino-acid N-acetyltransferase compare
BWI76_RS25115 -7.9 -5.1 argininosuccinate synthase compare
BWI76_RS07065 -7.5 -5.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00850 -7.0 -8.0 acetylglutamate kinase compare
BWI76_RS20355 -7.0 -2.5 colicin V production protein compare
BWI76_RS18955 -7.0 -3.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS20350 -6.7 -5.4 amidophosphoribosyltransferase compare
BWI76_RS04465 -6.7 -3.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS20965 -6.5 -3.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04470 -6.4 -4.4 carbamoyl phosphate synthase large subunit compare
BWI76_RS03010 -6.2 -9.5 ornithine carbamoyltransferase compare
BWI76_RS01610 -6.2 -6.3 phosphoribosylamine--glycine ligase compare
BWI76_RS04675 -6.1 -6.0 3-isopropylmalate dehydrogenase compare
BWI76_RS00990 -6.1 -9.9 ketol-acid reductoisomerase compare
BWI76_RS04255 -6.0 -7.4 threonine synthase compare
BWI76_RS21265 -6.0 -12.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS18935 -6.0 -6.4 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS18950 -5.9 -4.0 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS18920 -5.9 -2.5 ATP phosphoribosyltransferase compare
BWI76_RS04670 -5.8 -10.1 3-isopropylmalate dehydratase large subunit compare
BWI76_RS01095 -5.8 -2.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS02995 -5.7 -7.5 aspartate carbamoyltransferase compare
BWI76_RS26425 -5.7 -8.1 zinc/cadmium/mercury/lead-transporting ATPase compare
BWI76_RS23365 -5.6 -2.2 LysR family transcriptional regulator compare
BWI76_RS26460 -5.6 -3.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS20895 -5.6 -3.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS11840 -5.6 -1.8 tryptophan synthase subunit alpha compare
BWI76_RS04245 -5.6 -14.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00845 -5.5 -10.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS08385 -5.4 -1.9 citrate (Si)-synthase compare
BWI76_RS27385 -5.4 -5.9 orotate phosphoribosyltransferase compare
BWI76_RS17975 -5.4 -2.7 tail-specific protease compare
BWI76_RS04665 -5.4 -22.1 3-isopropylmalate dehydratase small subunit compare
BWI76_RS26000 -5.4 -6.6 aspartate aminotransferase family protein compare
BWI76_RS00855 -5.3 -9.5 argininosuccinate lyase compare
BWI76_RS01615 -5.3 -9.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS21350 -5.3 -4.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS00975 -5.2 -9.3 dihydroxy-acid dehydratase compare
BWI76_RS00875 -5.2 -3.4 DNA-binding transcriptional regulator FabR compare
BWI76_RS11965 -5.2 -3.5 orotidine-5'-phosphate decarboxylase compare
BWI76_RS00835 -5.0 -12.9 phosphoenolpyruvate carboxylase compare
BWI76_RS07070 -5.0 -2.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS16965 -4.9 -1.5 murein lipoprotein compare
BWI76_RS03665 -4.8 -2.0 ABC transporter ATP-binding protein compare
BWI76_RS26455 -4.8 -1.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS11850 -4.7 -8.3 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00980 -4.6 -12.8 PLP-dependent threonine dehydratase compare
BWI76_RS23265 -4.5 -1.3 hypothetical protein compare
BWI76_RS25700 -4.5 -5.5 heavy metal-responsive transcriptional regulator compare
BWI76_RS18925 -4.5 -3.1 histidinol dehydrogenase compare
BWI76_RS24285 -4.5 -8.0 cystathionine beta-lyase compare
BWI76_RS01110 -4.4 -5.0 TDP-fucosamine acetyltransferase compare
BWI76_RS09760 -4.4 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21475 -4.4 -2.2 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS19840 -4.4 -0.9 hypothetical protein compare
BWI76_RS01135 -4.3 -4.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS04240 -4.3 -1.2 thr operon leader peptide compare
BWI76_RS04680 -4.3 -14.1 2-isopropylmalate synthase compare
BWI76_RS22755 -4.3 -2.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS27390 -4.3 -3.9 ribonuclease PH compare
BWI76_RS00785 -4.3 -5.7 cystathionine gamma-synthase compare
BWI76_RS26395 -4.3 -3.8 cell division protein FtsE compare
BWI76_RS26390 -4.2 -7.3 cell division protein FtsX compare
BWI76_RS01090 -4.2 -4.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS11845 -4.1 -1.0 tryptophan synthase subunit beta compare
BWI76_RS01655 -4.1 -8.7 homoserine O-succinyltransferase compare
BWI76_RS09910 -4.1 -14.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS05260 -4.1 -0.9 chaperone compare
BWI76_RS05015 -4.0 -1.7 transcriptional regulator compare
BWI76_RS04160 -4.0 -2.2 phosphoserine phosphatase compare
BWI76_RS17805 -4.0 -1.2 membrane protein compare
BWI76_RS05840 -4.0 -2.2 glutamate 5-kinase compare
BWI76_RS08520 -3.9 -1.4 colicin transporter TolQ compare
BWI76_RS08760 -3.9 -6.3 biotin synthase compare
BWI76_RS16490 -3.9 -1.2 glutaredoxin compare
BWI76_RS04685 -3.9 -8.8 putative leucine operon leader peptide compare
BWI76_RS06525 -3.9 -3.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS17980 -3.8 -3.9 RNA chaperone ProQ compare
BWI76_RS25960 -3.8 -2.2 NUDIX hydrolase compare
BWI76_RS02735 -3.8 -3.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS11860 -3.8 -9.6 anthranilate synthase component I compare
BWI76_RS10990 -3.8 -1.3 dihydroorotase compare
BWI76_RS23970 -3.7 -2.6 mechanosensitive ion channel protein MscS compare
BWI76_RS20390 -3.7 -3.5 erythronate-4-phosphate dehydrogenase compare
BWI76_RS11855 -3.7 -7.5 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS00965 -3.7 -0.8 acetolactate synthase 2 small subunit compare
BWI76_RS08580 -3.7 -3.1 quinolinate synthetase compare
BWI76_RS08535 -3.7 -1.3 translocation protein TolB compare
BWI76_RS19905 -3.6 -3.7 OmpK36 porin compare
BWI76_RS24340 -3.6 -6.6 two-component sensor histidine kinase compare
BWI76_RS09645 -3.6 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS14320 -3.6 -1.6 hypothetical protein compare
BWI76_RS21070 -3.5 -1.3 outer membrane protein assembly factor BamB compare
BWI76_RS06680 -3.5 -1.0 hypothetical protein compare
BWI76_RS06675 -3.5 -9.4 nickel/cobalt efflux protein RcnA compare
BWI76_RS04645 -3.5 -2.3 3-dehydroquinase compare
BWI76_RS01900 -3.4 -5.1 tRNA-dihydrouridine synthase A compare
BWI76_RS00720 -3.4 -1.4 DNA-binding response regulator compare
BWI76_RS25335 -3.4 -1.2 stringent starvation protein A compare
BWI76_RS04525 -3.4 -1.2 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS20380 -3.2 -0.7 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS00960 -3.2 -6.6 acetolactate synthase 2 catalytic subunit compare
BWI76_RS25645 -3.2 -4.7 shikimate dehydrogenase compare
BWI76_RS21165 -3.2 -1.1 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS04990 -3.1 -5.4 pantoate--beta-alanine ligase compare
BWI76_RS09755 -3.1 -1.8 phosphoserine transaminase compare
BWI76_RS00355 -3.1 -1.1 DNA polymerase I compare
BWI76_RS11170 -3.1 -0.9 hypothetical protein compare
BWI76_RS13755 -3.1 -0.9 hypothetical protein compare
BWI76_RS05835 -3.1 -1.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS00805 -3.1 -3.6 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS14390 -3.1 -0.9 hypothetical protein compare
BWI76_RS21450 -3.0 -1.2 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS23920 -3.0 -1.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS12145 -3.0 -1.7 hypothetical protein compare
BWI76_RS26570 -3.0 -1.6 anion permease compare
BWI76_RS26620 -2.9 -0.6 Fe-S biogenesis protein NfuA compare
BWI76_RS21465 -2.9 -3.3 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS04845 -2.9 -7.1 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS21075 -2.9 -1.0 membrane protein compare
BWI76_RS10745 -2.8 -0.8 hypothetical protein compare
BWI76_RS22765 -2.8 -7.2 sulfite reductase subunit alpha compare
BWI76_RS24605 -2.8 -4.5 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS01800 -2.7 -1.5 glucose-6-phosphate isomerase compare
BWI76_RS03660 -2.7 -1.7 hypothetical protein compare
BWI76_RS15825 -2.7 -0.8 hypothetical protein compare
BWI76_RS04100 -2.6 -2.9 peptide chain release factor 3 compare
BWI76_RS13785 -2.6 -1.3 ABC transporter permease compare
BWI76_RS23360 -2.6 -1.0 diaminopimelate decarboxylase compare
BWI76_RS06535 -2.6 -2.5 endopeptidase La compare
BWI76_RS08530 -2.6 -1.0 protein TolA compare
BWI76_RS21660 -2.6 -1.3 antirestriction protein compare
BWI76_RS15850 -2.6 -1.9 DUF1317 domain-containing protein compare
BWI76_RS24740 -2.5 -2.3 GntR family transcriptional regulator compare
BWI76_RS09970 -2.5 -0.7 porin OmpA compare
BWI76_RS04955 -2.5 -1.4 hypoxanthine phosphoribosyltransferase compare
BWI76_RS22760 -2.5 -5.4 sulfite reductase subunit beta compare
BWI76_RS15965 -2.5 -4.1 MFS transporter compare
BWI76_RS01125 -2.5 -3.4 4-alpha-L-fucosyltransferase compare
BWI76_RS02745 -2.5 -1.1 hypothetical protein compare
BWI76_RS01275 -2.5 -7.5 LysR family transcriptional regulator compare
BWI76_RS00345 -2.5 -3.0 protein disulfide oxidoreductase DsbA compare
BWI76_RS19770 -2.5 -1.0 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS07465 -2.4 -0.7 TetR family transcriptional regulator compare
BWI76_RS08210 -2.4 -0.7 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS14305 -2.4 -3.5 metallophosphoesterase compare
BWI76_RS04995 -2.4 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS12070 -2.4 -1.0 hypothetical protein compare
BWI76_RS01115 -2.4 -1.9 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS09305 -2.3 -2.9 hypothetical protein compare
BWI76_RS27450 -2.3 -5.5 ferredoxin--NADP(+) reductase compare
BWI76_RS01210 -2.3 -0.8 tyrosine recombinase XerC compare
BWI76_RS22690 -2.3 -1.1 adenylyl-sulfate kinase compare
BWI76_RS09540 -2.3 -2.5 hypothetical protein compare
BWI76_RS26670 -2.3 -6.4 two-component sensor histidine kinase compare
BWI76_RS25315 -2.3 -9.3 glutamate synthase large subunit compare
BWI76_RS07640 -2.3 -1.6 short chain dehydrogenase compare
BWI76_RS10700 -2.3 -2.2 XRE family transcriptional regulator compare
BWI76_RS17045 -2.3 -1.1 hypothetical protein compare
BWI76_RS01105 -2.3 -3.3 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS22805 -2.3 -6.0 GTP diphosphokinase compare
BWI76_RS15635 -2.3 -5.7 hypothetical protein compare
BWI76_RS08380 -2.2 -1.1 endonuclease VIII compare
BWI76_RS16920 -2.2 -0.9 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS24745 -2.2 -2.9 membrane protein compare
BWI76_RS24600 -2.2 -1.8 dihydroxyacetone kinase compare
BWI76_RS24900 -2.2 -0.9 DeoR family transcriptional regulator compare
BWI76_RS13820 -2.2 -1.0 hypothetical protein compare
BWI76_RS21570 -2.2 -1.8 RnfH family protein compare
BWI76_RS01385 -2.2 -1.5 potassium transporter compare
BWI76_RS05450 -2.2 -0.6 ribonuclease HI compare
BWI76_RS21310 -2.1 -0.6 DNA repair protein RecO compare
BWI76_RS02550 -2.1 -2.6 protease modulator HflC compare
BWI76_RS27440 -2.1 -1.3 DNA helicase RecG compare
BWI76_RS21690 -2.1 -1.6 hypothetical protein compare
BWI76_RS24580 -2.1 -3.5 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS10710 -2.1 -6.3 Glutamate--putrescine ligase (EC 6.3.1.11) (from data) compare
BWI76_RS25060 -2.1 -3.3 lipoprotein NlpI compare
BWI76_RS00400 -2.1 -0.7 glutamine synthetase compare
BWI76_RS23985 -2.1 -5.5 erythrose-4-phosphate dehydrogenase compare
BWI76_RS20640 -2.1 -2.9 cysteine synthase A compare
BWI76_RS24100 -2.0 -2.7 YggS family pyridoxal phosphate enzyme compare
BWI76_RS07865 -2.0 -2.4 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS12270 -2.0 -2.0 hypothetical protein compare
BWI76_RS16425 -2.0 -2.0 hypothetical protein compare
BWI76_RS16635 -2.0 -3.7 carbonate dehydratase compare
BWI76_RS26665 -2.0 -1.6 DNA-binding response regulator compare
BWI76_RS25320 -2.0 -5.2 glutamate synthase compare
BWI76_RS11205 -2.0 -3.0 transcription-repair coupling factor compare
BWI76_RS21370 -2.0 -0.6 ATP-dependent RNA helicase SrmB compare
BWI76_RS24385 -2.0 -5.5 phosphodiesterase compare
BWI76_RS12790 -2.0 -0.9 lactate dehydrogenase compare
BWI76_RS10930 -2.0 -5.1 glucan biosynthesis protein G compare
BWI76_RS04715 -1.9 -1.4 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS13330 -1.9 -0.8 tellurite resistance methyltransferase TehB compare
BWI76_RS17675 -1.9 -1.4 hypothetical protein compare
BWI76_RS20375 -1.9 -1.2 membrane protein compare


Specific Phenotypes

For 10 genes in this experiment

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL in Klebsiella michiganensis M5al

For mixed community Mixed culture; Trichoderma harzianum M10 spores at 2.5*10^6 spores/mL across organisms