Experiment set13IT049 for Herbaspirillum seropedicae SmR1

Compare to:

R2A with Vogels_fungal_media 0.8X

200 most important genes:

  gene name fitness t score description  
HSERO_RS19805 -3.5 -6.4 glycosyl transferase compare
HSERO_RS15070 -3.4 -1.3 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS16470 -3.2 -3.3 tryptophan synthase subunit alpha compare
HSERO_RS19590 -3.1 -1.8 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS16475 -3.0 -3.3 tryptophan synthase subunit alpha compare
HSERO_RS23945 -2.9 -3.4 cobyric acid synthase CobQ compare
HSERO_RS19450 -2.8 -7.3 indole-3-glycerol-phosphate synthase compare
HSERO_RS00430 -2.8 -2.8 glutamate--cysteine ligase compare
HSERO_RS08790 -2.5 -1.4 hypothetical protein compare
HSERO_RS16480 -2.4 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS02330 -2.3 -4.9 aspartate carbamoyltransferase compare
HSERO_RS20985 -2.2 -1.9 serine acetyltransferase compare
HSERO_RS20920 -2.2 -7.8 3-dehydroquinate synthase compare
HSERO_RS09745 -2.2 -2.1 chemotaxis protein CheY compare
HSERO_RS19445 -2.0 -10.8 anthranilate phosphoribosyltransferase compare
HSERO_RS02325 -1.8 -11.4 uracil phosphoribosyltransferase compare
HSERO_RS07160 -1.8 -6.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS05910 -1.7 -2.4 phosphoribosylglycinamide formyltransferase compare
HSERO_RS21475 -1.7 -2.3 recombinase XerC compare
HSERO_RS10460 -1.7 -1.6 homoserine dehydrogenase compare
HSERO_RS02340 -1.7 -11.2 dihydroorotase compare
HSERO_RS09720 -1.7 -3.6 membrane protein compare
HSERO_RS09725 -1.6 -7.9 ABC transporter compare
HSERO_RS21445 -1.5 -1.6 lipid A biosynthesis acyltransferase compare
HSERO_RS17110 -1.5 -1.7 ribonuclease H compare
HSERO_RS19595 -1.5 -8.2 glutamate synthase compare
HSERO_RS01935 -1.5 -3.3 3-dehydroquinate dehydratase compare
HSERO_RS09740 -1.5 -3.6 histidine kinase compare
HSERO_RS20235 -1.5 -1.1 cytochrome C compare
HSERO_RS09735 -1.4 -3.4 hypothetical protein compare
HSERO_RS08640 -1.4 -2.5 hypothetical protein compare
HSERO_RS19435 -1.3 -5.9 anthranilate synthase subunit I compare
HSERO_RS02650 -1.3 -5.2 dihydroxy-acid dehydratase compare
HSERO_RS01990 -1.2 -6.5 shikimate 5-dehydrogenase compare
HSERO_RS02260 -1.2 -1.8 DNA polymerase I compare
HSERO_RS15780 -1.1 -3.6 GntR family transcriptional regulator compare
HSERO_RS13275 -1.1 -1.7 cobalamin biosynthesis protein CbiG compare
HSERO_RS02090 -1.1 -1.1 Holliday junction DNA helicase RuvA compare
HSERO_RS12920 -1.1 -0.8 trigger factor compare
HSERO_RS03285 -1.1 -1.3 succinyl-CoA synthetase subsunit alpha compare
HSERO_RS15575 -1.1 -1.2 uroporphyrin-III C-methyltransferase compare
HSERO_RS19835 -1.1 -3.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS05515 -1.1 -0.4 glucose-6-phosphate isomerase compare
HSERO_RS14930 -1.1 -1.9 aldolase compare
HSERO_RS20325 -1.1 -4.1 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS07970 -1.1 -2.3 formyltetrahydrofolate deformylase compare
HSERO_RS08700 -1.0 -1.8 hypothetical protein compare
HSERO_RS09660 -1.0 -1.8 ribonuclease III compare
HSERO_RS03875 -1.0 -1.3 hypothetical protein compare
HSERO_RS08605 -1.0 -2.1 Hsp33 chaperonin compare
HSERO_RS03450 -1.0 -1.5 energy transducer protein TonB compare
HSERO_RS17980 -1.0 -1.5 GTP-binding protein compare
HSERO_RS02315 -1.0 -2.7 transcriptional regulator compare
HSERO_RS21150 -0.9 -2.3 aldolase compare
HSERO_RS09245 -0.9 -1.4 carboxylesterase compare
HSERO_RS02140 -0.9 -1.3 thiamine-phosphate synthase compare
HSERO_RS05125 -0.9 -3.1 DeoR family transcripitonal regulator compare
HSERO_RS10815 -0.9 -1.9 chromosome segregation protein SMC compare
HSERO_RS23655 -0.9 -1.6 phosphonate ABC transporter permease compare
HSERO_RS13415 -0.9 -2.0 VdlD compare
HSERO_RS08115 -0.9 -0.8 acyl-CoA-binding protein compare
HSERO_RS20980 -0.9 -2.9 oxidoreductase compare
HSERO_RS01880 -0.9 -1.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS09730 -0.9 -3.2 glycoside hydrolase family 43 compare
HSERO_RS08650 -0.9 -5.2 acetolactate synthase compare
HSERO_RS06145 -0.9 -0.9 NrdR family transcriptional regulator compare
HSERO_RS13265 -0.9 -1.6 G3E family GTPase compare
HSERO_RS20320 -0.9 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS21640 -0.9 -1.9 recombinase RdgC compare
HSERO_RS18015 -0.9 -1.4 transcriptional regulator compare
HSERO_RS21060 -0.9 -3.6 hypothetical protein compare
HSERO_RS13255 -0.9 -2.5 cobyrinic acid a,c-diamide synthase compare
HSERO_RS14935 -0.8 -1.5 hypothetical protein compare
HSERO_RS02450 -0.8 -1.2 arsenate reductase compare
HSERO_RS18455 -0.8 -1.6 phosphoglycolate phosphatase compare
HSERO_RS02100 -0.8 -1.0 4-oxalocrotonate decarboxylase compare
HSERO_RS17815 -0.8 -0.5 glycosyl transferase compare
HSERO_RS11465 -0.8 -1.2 sodium:proton antiporter compare
HSERO_RS10670 -0.8 -3.0 signal transduction protein compare
HSERO_RS10400 -0.8 -4.5 inorganic phosphate transporter compare
HSERO_RS16860 -0.8 -2.2 hypothetical protein compare
HSERO_RS09820 -0.8 -1.8 riboflavin synthase subunit beta compare
HSERO_RS21010 -0.8 -4.3 LPS biosynthesis protein compare
HSERO_RS21040 -0.8 -2.3 3-oxoacyl-ACP synthase compare
HSERO_RS19995 -0.8 -0.8 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS16200 -0.8 -2.1 hypothetical protein compare
HSERO_RS22285 -0.8 -0.9 GntR family transcriptional regulator compare
HSERO_RS15795 -0.8 -2.8 galactaro-1,5-lactonase (from data) compare
HSERO_RS13475 -0.7 -2.2 C4-dicarboxylate ABC transporter compare
HSERO_RS16075 -0.7 -0.8 coproporphyrinogen III oxidase compare
HSERO_RS02015 -0.7 -2.1 peptidase M23 compare
HSERO_RS13560 -0.7 -2.1 transcriptional regulator compare
HSERO_RS12270 -0.7 -2.1 ABC transporter compare
HSERO_RS08725 -0.7 -1.3 transcriptional regulator compare
HSERO_RS08075 -0.7 -1.0 ferredoxin compare
HSERO_RS11460 -0.7 -1.1 universal stress protein compare
HSERO_RS09775 -0.7 -1.3 cobalamin synthase compare
HSERO_RS10155 -0.7 -1.9 antiactivator of flagellar biosynthesis FleN protein compare
HSERO_RS20310 -0.7 -2.0 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS06940 -0.7 -1.2 23S rRNA methyltransferase compare
HSERO_RS13580 -0.7 -3.0 LysR family transcriptional regulator compare
HSERO_RS03085 -0.7 -1.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS11595 -0.7 -1.3 ArsR family transcriptional regulator compare
HSERO_RS11605 -0.7 -2.8 LysR family transcriptional regulator compare
HSERO_RS07710 -0.7 -1.4 hypothetical protein compare
HSERO_RS20350 -0.7 -1.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS20625 -0.7 -1.0 phenylacetate-CoA oxygenase compare
HSERO_RS01720 -0.7 -1.5 membrane protein compare
HSERO_RS14965 -0.7 -1.4 chemotaxis protein compare
HSERO_RS13285 -0.7 -1.1 precorrin-2 C20-methyltransferase compare
HSERO_RS23980 -0.7 -2.0 ABC transporter permease compare
HSERO_RS02275 -0.7 -0.8 hypothetical protein compare
HSERO_RS11150 -0.7 -1.7 hypothetical protein compare
HSERO_RS17155 -0.7 -1.5 RNA helicase compare
HSERO_RS06170 -0.7 -1.4 S-adenosylmethionine tRNA ribosyltransferase compare
HSERO_RS23760 -0.7 -2.5 hypothetical protein compare
HSERO_RS01815 -0.7 -2.0 gamma-glutamyl kinase compare
HSERO_RS10405 -0.7 -0.9 phosphate starvation protein PhoH compare
HSERO_RS03595 -0.7 -2.0 cation transporter compare
HSERO_RS15530 -0.7 -2.3 chemotaxis protein CheZ compare
HSERO_RS14580 -0.6 -3.4 hypothetical protein compare
HSERO_RS21005 -0.6 -3.4 asparagine synthase compare
HSERO_RS16055 -0.6 -2.3 cytochrome oxidase subunit I compare
HSERO_RS22350 -0.6 -1.0 urea carboxylase compare
HSERO_RS06175 -0.6 -2.0 queuine tRNA-ribosyltransferase compare
HSERO_RS14960 -0.6 -1.3 Fis family transcriptional regulator compare
HSERO_RS21375 -0.6 -1.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS13270 -0.6 -2.9 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS15570 -0.6 -2.5 sulfate adenylyltransferase compare
HSERO_RS12555 -0.6 -3.4 major facilitator transporter compare
HSERO_RS04135 -0.6 -1.0 amidohydrolase compare
HSERO_RS16030 -0.6 -1.2 cytochrome oxidase assembly protein compare
HSERO_RS08655 -0.6 -1.1 acetolactate synthase compare
HSERO_RS14270 -0.6 -1.9 hypothetical protein compare
HSERO_RS23185 -0.6 -0.6 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS20600 -0.6 -2.0 transcription regulator protein compare
HSERO_RS20315 -0.6 -2.0 imidazole glycerol phosphate synthase compare
HSERO_RS13295 -0.6 -1.8 membrane protein compare
HSERO_RS21340 -0.6 -2.0 septum formation inhibitor protein compare
HSERO_RS22205 -0.6 -1.9 L-rhamnose mutarotase compare
HSERO_RS08475 -0.6 -2.1 chemotaxis protein CheY compare
HSERO_RS08795 -0.6 -1.0 transcriptional regulator compare
HSERO_RS12975 -0.6 -1.0 phytoene synthase compare
HSERO_RS10455 -0.6 -2.5 aminotransferase compare
HSERO_RS23820 -0.6 -2.8 MarR family transcriptional regulator compare
HSERO_RS07255 -0.6 -1.9 glutaminase compare
HSERO_RS24030 -0.6 -3.3 hypothetical protein compare
HSERO_RS21055 -0.6 -2.7 hypothetical protein compare
HSERO_RS21480 -0.6 -0.6 transcriptional regulator compare
HSERO_RS09925 -0.6 -1.6 hypothetical protein compare
HSERO_RS07755 -0.6 -2.7 glutamate racemase compare
HSERO_RS03475 -0.6 -2.9 NUDIX hydrolase compare
HSERO_RS17190 -0.6 -2.9 hypothetical protein compare
HSERO_RS19800 -0.6 -2.9 membrane protein compare
HSERO_RS08430 -0.6 -1.8 diguanylate cyclase compare
HSERO_RS11475 -0.6 -1.1 hypothetical protein compare
HSERO_RS21420 -0.6 -2.0 5-formyltetrahydrofolate cyclo-ligase compare
HSERO_RS04855 -0.6 -1.7 ABC transporter permease compare
HSERO_RS20820 -0.6 -0.6 ABC transporter ATP-binding protein compare
HSERO_RS22065 -0.6 -1.5 EpiA compare
HSERO_RS03540 -0.6 -0.7 dimethyladenosine transferase compare
HSERO_RS02095 -0.6 -1.2 Holliday junction DNA helicase RuvB compare
HSERO_RS16450 -0.6 -0.7 colicin V production protein compare
HSERO_RS10490 -0.6 -2.1 gluconate transporter compare
HSERO_RS16220 -0.6 -2.1 hypothetical protein compare
HSERO_RS13310 -0.6 -2.8 cobaltochelatase compare
HSERO_RS13320 -0.6 -0.9 membrane protein compare
HSERO_RS10395 -0.6 -1.1 phosphate transport regulator compare
HSERO_RS13305 -0.6 -2.2 magnesium chelatase compare
HSERO_RS20855 -0.6 -1.5 ferritin compare
HSERO_RS00300 -0.6 -3.0 ornithine cyclodeaminase compare
HSERO_RS23630 -0.6 -1.5 urease accessory protein UreF compare
HSERO_RS20255 -0.6 -2.6 metal-binding protein compare
HSERO_RS12435 -0.6 -1.8 dioxygenase compare
HSERO_RS22440 -0.6 -0.8 hypothetical protein compare
HSERO_RS05505 -0.5 -1.1 transcriptional regulator compare
HSERO_RS17105 -0.5 -1.0 DNA polymerase III subunit epsilon compare
HSERO_RS18875 -0.5 -0.8 ATPase compare
HSERO_RS10570 -0.5 -2.4 molybdenum ABC transporter ATPase compare
HSERO_RS15040 -0.5 -2.3 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS06545 -0.5 -2.1 catechol 1,2-dioxygenase compare
HSERO_RS06935 -0.5 -1.1 RNA-binding protein compare
HSERO_RS19300 -0.5 -2.9 threonine transporter compare
HSERO_RS04860 -0.5 -0.8 sugar ABC transporter permease compare
HSERO_RS13715 -0.5 -1.4 hypothetical protein compare
HSERO_RS18770 -0.5 -1.3 transcriptional regulator compare
HSERO_RS09235 -0.5 -0.8 MarR family transcriptional regulator compare
HSERO_RS21080 -0.5 -3.0 glycosyl transferase compare
HSERO_RS04875 -0.5 -2.4 glycerol kinase compare
HSERO_RS11305 -0.5 -2.0 membrane protein compare
HSERO_RS22590 -0.5 -3.3 hydrolase compare
HSERO_RS08345 -0.5 -1.6 AraC family transcriptional regulator compare
HSERO_RS18515 -0.5 -0.8 membrane protein compare
HSERO_RS02910 -0.5 -2.5 IclR family transcriptional regulator compare
HSERO_RS10575 -0.5 -1.7 molybdate ABC transporter permease compare
HSERO_RS16515 -0.5 -2.8 isopropylmalate isomerase compare
HSERO_RS14840 -0.5 -1.4 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS00145 -0.5 -1.8 hypothetical protein compare
HSERO_RS14835 -0.5 -1.3 peptidase M23 compare
HSERO_RS16050 -0.5 -0.7 peptidase S41 compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms