Experiment set13IT048 for Herbaspirillum seropedicae SmR1

Compare to:

R2A with Vogels_fungal_media 0.2X

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS19090 +1.3 3.3 C4-dicarboxylate ABC transporter compare
HSERO_RS06420 +1.2 2.2 hypothetical protein compare
HSERO_RS06745 +1.1 2.7 hypothetical protein compare
HSERO_RS18105 +1.0 3.3 hypothetical protein compare
HSERO_RS09335 +1.0 3.1 DNA-3-methyladenine glycosylase compare
HSERO_RS10290 +1.0 4.1 flagellar biosynthesis protein FliJ compare
HSERO_RS13890 +1.0 7.4 LuxR family transcriptional regulator compare
HSERO_RS10295 +1.0 6.0 ATP synthase compare
HSERO_RS10315 +0.9 4.5 flagellar hook-basal body protein FliE compare
HSERO_RS10255 +0.9 4.4 flagellar biosynthesis protein FliQ compare
HSERO_RS10205 +0.9 6.6 flagellar basal body rod protein FlgG compare
HSERO_RS18365 +0.9 1.5 hypothetical protein compare
HSERO_RS10190 +0.9 3.2 flagellar basal body rod modification protein FlgD compare
HSERO_RS10195 +0.9 4.1 flagellar hook protein FlgE compare
HSERO_RS10215 +0.9 6.7 flagellar P-ring protein FlgI compare
HSERO_RS12140 +0.8 2.1 5-deoxyglucuronate isomerase compare
HSERO_RS14985 +0.8 7.0 transcriptional regulator compare
HSERO_RS10275 +0.8 4.2 flagellar motor switch protein FliM compare
HSERO_RS10250 +0.8 5.1 flagellar biosynthesis protein FliR compare
HSERO_RS19265 +0.8 1.7 LysR family transcriptional regulator compare
HSERO_RS07385 +0.8 1.9 hypothetical protein compare
HSERO_RS10175 +0.8 7.1 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS01985 +0.8 4.4 energy transducer TonB compare
HSERO_RS11595 +0.8 1.5 ArsR family transcriptional regulator compare
HSERO_RS10140 +0.8 6.8 flagellar biosynthesis protein FlhB compare
HSERO_RS10160 +0.8 4.9 flagellar biosynthesis sigma factor compare
HSERO_RS10145 +0.8 6.9 flagellar biosynthesis protein FlhA compare
HSERO_RS10180 +0.8 2.2 flagellar biosynthesis protein FlgB compare
HSERO_RS13885 +0.7 6.1 histidine kinase compare
HSERO_RS11665 +0.7 1.4 nitrate ABC transporter ATP-binding protein compare
HSERO_RS10185 +0.7 5.8 flagellar basal body rod protein FlgC compare
HSERO_RS09780 +0.7 0.8 phosphoglycerate mutase compare
HSERO_RS10150 +0.7 5.9 flagellar biosynthesis regulator FlhF compare
HSERO_RS10260 +0.7 6.0 flagellar biosynthesis protein FliP compare
HSERO_RS05325 +0.7 1.7 ribose ABC transporter permease compare
HSERO_RS05855 +0.7 3.4 flagellar motor protein MotA compare
HSERO_RS21745 +0.7 2.3 5'-methylthioadenosine nucleosidase compare
HSERO_RS02610 +0.7 2.0 hypothetical protein compare
HSERO_RS02630 +0.7 2.3 membrane protein compare
HSERO_RS21175 +0.7 3.2 hypothetical protein compare
HSERO_RS10280 +0.7 2.1 flagellar basal body protein FliL compare
HSERO_RS10200 +0.7 3.4 flagellar basal body rod protein FlgF compare
HSERO_RS13490 +0.7 1.7 pseudouridine synthase compare
HSERO_RS23115 +0.7 1.9 membrane protein compare
HSERO_RS10020 +0.7 1.2 flippase compare
HSERO_RS01050 +0.6 2.1 baseplate protein compare
HSERO_RS16975 +0.6 2.4 mannosyltransferase compare
HSERO_RS10805 +0.6 1.3 succinyldiaminopimelate aminotransferase compare
HSERO_RS19770 +0.6 1.6 hypothetical protein compare
HSERO_RS16885 +0.6 0.3 magnesium-transporting ATPase compare
HSERO_RS19720 +0.6 2.3 glyoxalase compare
HSERO_RS18320 +0.6 1.7 LysR family transcriptional regulator compare
HSERO_RS16940 +0.6 2.2 hypothetical protein compare
HSERO_RS03620 +0.6 2.1 LysR family transcriptional regulator compare
HSERO_RS10305 +0.6 5.4 flagellar motor switch protein FliG compare
HSERO_RS14250 +0.6 2.5 molybdate ABC transporter substrate-binding protein compare
HSERO_RS08205 +0.6 1.8 sulfonate ABC transporter compare
HSERO_RS14970 +0.6 3.5 flagellar motor protein MotB compare
HSERO_RS16765 +0.6 2.6 LysR family transcriptional regulator compare
HSERO_RS22565 +0.6 1.4 AraC family transcriptional regulator compare
HSERO_RS11715 +0.6 2.2 hypothetical protein compare
HSERO_RS18115 +0.6 1.4 hypothetical protein compare
HSERO_RS18515 +0.6 2.1 membrane protein compare
HSERO_RS19175 +0.6 1.7 twitching motility protein compare
HSERO_RS03575 +0.6 1.7 D,D-heptose 1,7-bisphosphate phosphatase compare
HSERO_RS09650 +0.6 0.8 elongation factor 4 compare
HSERO_RS02560 +0.6 0.8 hypothetical protein compare
HSERO_RS08005 +0.6 1.7 Pb-specific transcription regulator protein compare
HSERO_RS14300 +0.6 2.2 nitrogenase iron protein compare
HSERO_RS05890 +0.6 1.6 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS10310 +0.5 3.5 flagellar M-ring protein FliF compare
HSERO_RS14975 +0.5 3.1 flagellar motor protein MotA compare
HSERO_RS01020 +0.5 2.0 hypothetical protein compare
HSERO_RS06555 +0.5 1.6 benzoate 1,2-dioxygenase subunit beta compare
HSERO_RS21760 +0.5 1.7 DSBA oxidoreductase compare
HSERO_RS04505 +0.5 1.6 hypothetical protein compare
HSERO_RS06365 +0.5 2.2 hypothetical protein compare
HSERO_RS10285 +0.5 3.2 flagellar hook-length control protein compare
HSERO_RS20080 +0.5 1.5 hypothetical protein compare
HSERO_RS16970 +0.5 3.4 ABC transporter permease compare
HSERO_RS13335 +0.5 0.8 hypothetical protein compare
HSERO_RS01995 +0.5 2.1 peptidoglycan transglycosylase compare
HSERO_RS22095 +0.5 1.7 hypothetical protein compare
HSERO_RS18845 +0.5 1.5 hypothetical protein compare
HSERO_RS14050 +0.5 1.6 CoA transferase compare
HSERO_RS11345 +0.5 1.4 hypothetical protein compare
HSERO_RS18525 +0.5 1.6 hypothetical protein compare
HSERO_RS03960 +0.5 3.4 hypothetical protein compare
HSERO_RS05970 +0.5 1.0 ABC transporter compare
HSERO_RS17105 +0.5 1.1 DNA polymerase III subunit epsilon compare
HSERO_RS04155 +0.5 1.0 hypothetical protein compare
HSERO_RS10850 +0.5 1.3 ABC transporter compare
HSERO_RS19155 +0.5 1.9 LysR family transcriptional regulator compare
HSERO_RS23170 +0.5 2.8 ATPase AAA compare
HSERO_RS13770 +0.5 1.3 polysaccharide deacetylase compare
HSERO_RS10165 +0.5 1.9 flagellar biosynthesis protein compare
HSERO_RS10945 +0.5 1.3 ribonuclease HII compare
HSERO_RS06805 +0.5 2.0 transcriptional regulator compare
HSERO_RS05285 +0.5 3.0 cyclopropane-fatty-acyl-phospholipid synthase compare
HSERO_RS21345 +0.5 1.1 cell division inhibitor MinD compare
HSERO_RS06630 +0.5 1.6 alpha/beta hydrolase compare
HSERO_RS07885 +0.5 1.3 peptide ABC transporter ATP-binding protein compare
HSERO_RS00245 +0.5 1.6 hypothetical protein compare
HSERO_RS17570 +0.5 1.0 4-carboxymuconolactone decarboxylase compare
HSERO_RS20795 +0.5 1.8 membrane protein compare
HSERO_RS21470 +0.5 1.4 hypothetical protein compare
HSERO_RS02545 +0.5 1.0 membrane protein compare
HSERO_RS15165 +0.5 2.0 chemotaxis protein compare
HSERO_RS15145 +0.5 3.0 peptidase M23 compare
HSERO_RS23125 +0.5 2.4 transcriptional regulator compare
HSERO_RS20005 +0.5 1.5 IclR family transcriptional regulator compare
HSERO_RS16305 +0.5 1.8 hypothetical protein compare
HSERO_RS18255 +0.5 1.2 branched-chain amino acid ABC transporter substrate-binding protein compare
HSERO_RS12855 +0.5 3.6 histidine kinase compare
HSERO_RS15950 +0.5 2.2 ABC transporter permease compare
HSERO_RS20610 +0.5 1.1 phenylacetate-CoA oxygenase subunit PaaA compare
HSERO_RS20065 +0.5 1.6 hypothetical protein compare
HSERO_RS12015 +0.5 0.7 molecular chaperone DnaK compare
HSERO_RS20640 +0.5 2.5 enoyl-CoA hydratase compare
HSERO_RS21525 +0.5 1.1 alpha/beta hydrolase compare
HSERO_RS17830 +0.5 1.2 rhodanese compare
HSERO_RS08360 +0.4 2.4 multidrug DMT transporter permease compare
HSERO_RS00965 +0.4 0.6 trehalose-phosphatase compare
HSERO_RS15315 +0.4 1.5 transcriptional regulator compare
HSERO_RS19630 +0.4 0.3 AMP nucleosidase compare
HSERO_RS00365 +0.4 1.2 membrane protein compare
HSERO_RS15965 +0.4 2.8 hypothetical protein compare
HSERO_RS01270 +0.4 1.6 enoyl-CoA hydratase compare
HSERO_RS19735 +0.4 1.6 acetolactate synthase compare
HSERO_RS08340 +0.4 2.0 AsnC family transcriptional regulator compare
HSERO_RS05145 +0.4 2.6 amino acid ABC transporter permease compare
HSERO_RS03980 +0.4 1.5 type III secretion HrcS protein compare
HSERO_RS11805 +0.4 1.2 hypothetical protein compare
HSERO_RS15310 +0.4 2.2 sulfoxide reductase catalytic subunit YedY compare
HSERO_RS11440 +0.4 2.6 ABC transporter permease compare
HSERO_RS21865 +0.4 1.3 MFS transporter compare
HSERO_RS05025 +0.4 1.3 hypothetical protein compare
HSERO_RS08970 +0.4 1.2 membrane protein compare
HSERO_RS09160 +0.4 1.5 amidase compare
HSERO_RS10265 +0.4 2.3 flagellar biosynthesis protein FliO compare
HSERO_RS18895 +0.4 2.1 alkane 1-monooxygenase compare
HSERO_RS13830 +0.4 1.0 hypothetical protein compare
HSERO_RS22185 +0.4 2.0 diguanylate cyclase compare
HSERO_RS06765 +0.4 2.4 3-oxoacyl-ACP reductase compare
HSERO_RS04015 +0.4 0.8 flagellar biosynthesis/type III secretory pathway protein compare
HSERO_RS00180 +0.4 1.1 hypothetical protein compare
HSERO_RS06580 +0.4 2.7 benzoate transporter compare
HSERO_RS12420 +0.4 1.6 transcriptional regulator compare
HSERO_RS12045 +0.4 1.7 trans-aconitate 2-methyltransferase compare
HSERO_RS09185 +0.4 1.8 isoaspartyl peptidase compare
HSERO_RS03810 +0.4 1.9 hypothetical protein compare
HSERO_RS21850 +0.4 2.0 hypothetical protein compare
HSERO_RS03920 +0.4 1.4 hypothetical protein compare
HSERO_RS23220 +0.4 3.0 hypothetical protein compare
HSERO_RS12475 +0.4 1.2 histidine kinase compare
HSERO_RS05165 +0.4 1.6 galactose-1-epimerase compare
HSERO_RS13685 +0.4 1.9 peptidase S1 compare
HSERO_RS08790 +0.4 0.5 hypothetical protein compare
HSERO_RS05065 +0.4 2.0 2-keto-4-pentenoate hydratase compare
HSERO_RS01175 +0.4 1.7 cardiolipin synthase compare
HSERO_RS12730 +0.4 3.2 succinylglutamate desuccinylase compare
HSERO_RS20020 +0.4 1.9 enoyl-CoA hydratase compare
HSERO_RS16905 +0.4 1.5 50S ribosomal protein L21 compare
HSERO_RS15360 +0.4 1.8 regulator of disulfide bond formation redox protein compare
HSERO_RS15155 +0.4 2.5 methyltransferase compare
HSERO_RS07465 +0.4 2.3 alpha/beta hydrolase compare
HSERO_RS03940 +0.4 2.3 hypothetical protein compare
HSERO_RS03975 +0.4 2.3 flagellar biosynthesis protein FliP compare
HSERO_RS12150 +0.4 2.0 iron-regulated membrane protein compare
HSERO_RS00910 +0.4 2.9 peptidase compare
HSERO_RS12870 +0.4 3.0 PilP assembly chaperone transmembrane protein compare
HSERO_RS03680 +0.4 0.9 type VI secretion system protein ImpK compare
HSERO_RS13755 +0.4 1.9 hypothetical protein compare
HSERO_RS17285 +0.4 0.7 chromate transporter compare
HSERO_RS06675 +0.4 2.5 xanthine/CO dehydrogenase maturation protein compare
HSERO_RS14150 +0.4 1.0 RNA polymerase sigma factor compare
HSERO_RS18470 +0.4 1.0 acyltransferase compare
HSERO_RS20085 +0.4 2.3 methyl-accepting chemotaxis protein compare
HSERO_RS13800 +0.4 1.5 glycosyl transferase family 1 compare
HSERO_RS08260 +0.4 1.1 hypothetical protein compare
HSERO_RS05675 +0.4 2.3 ABC transporter permease compare
HSERO_RS18690 +0.4 1.1 short-chain dehydrogenase compare
HSERO_RS08740 +0.4 2.2 permease compare
HSERO_RS18750 +0.4 1.4 dehydrogenase compare
HSERO_RS04055 +0.4 2.1 secretion system protein E compare
HSERO_RS13745 +0.4 2.0 chain-length determining protein compare
HSERO_RS16835 +0.4 2.5 phosphatidylglycerophosphatase compare
HSERO_RS12220 +0.4 0.7 dehydrogenase compare
HSERO_RS11725 +0.4 2.3 SyrP compare
HSERO_RS18350 +0.4 2.1 CoA transferase compare
HSERO_RS07135 +0.4 1.1 methyltransferase compare
HSERO_RS01345 +0.4 2.1 sugar ABC transporter substrate-binding protein compare
HSERO_RS15245 +0.4 2.2 XRE family transcriptional regulator compare
HSERO_RS09785 +0.4 2.3 LuxR family transcriptional regulator compare
HSERO_RS22425 +0.4 2.4 LysR family transcriptional regulator compare
HSERO_RS08285 +0.4 1.3 amino acid ABC transporter ATP-binding protein compare
HSERO_RS01420 +0.4 1.8 serine/threonine dehydratase compare
HSERO_RS05715 +0.4 1.7 amidohydrolase compare
HSERO_RS02715 +0.4 1.5 IclR family transcriptional regulator compare
HSERO_RS16490 +0.4 3.1 FimV compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in supernatant control:fungal media experiments

For supernatant control:fungal media Vogels_fungal_media, filtered across organisms