Experiment set13IT042 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Betaine (C)(N); with MOPS; with Sodium chloride

200 most important genes:

  gene name fitness t score description  
PFLU_RS18410 -6.0 -4.1 response regulator compare
PFLU_RS27365 -5.2 -3.6 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20575 -4.8 -4.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27875 -4.6 -6.3 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS04465 -4.6 -7.0 ATP phosphoribosyltransferase compare
PFLU_RS02050 -4.5 -11.7 NAD(P)-binding protein compare
PFLU_RS28390 -4.5 -8.0 methionine biosynthesis protein MetW compare
PFLU_RS28535 -4.4 -11.5 dihydroxy-acid dehydratase compare
PFLU_RS07230 -4.4 -6.1 RNA polymerase sigma factor RpoE compare
PFLU_RS28645 -4.4 -13.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS27820 -4.4 -8.4 sarcosine oxidase subunit beta compare
PFLU_RS27815 -4.4 -4.3 sarcosine oxidase subunit delta compare
PFLU_RS20580 -4.4 -6.7 3-isopropylmalate dehydratase large subunit compare
PFLU_RS20565 -4.3 -7.8 3-isopropylmalate dehydrogenase compare
PFLU_RS27865 -4.3 -10.8 glycine-betaine demethylase subunit GbcA compare
PFLU_RS27870 -4.3 -11.9 electron transfer flavoprotein subunit beta compare
PFLU_RS27810 -4.3 -13.0 sarcosine oxidase subunit alpha compare
PFLU_RS28385 -4.3 -11.4 homoserine O-acetyltransferase compare
PFLU_RS27895 -4.3 -9.9 membrane dipeptidase compare
PFLU_RS27825 -4.2 -9.4 serine hydroxymethyltransferase compare
PFLU_RS27370 -4.2 -8.5 anthranilate phosphoribosyltransferase compare
PFLU_RS29560 -4.2 -2.0 hypothetical protein compare
PFLU_RS02045 -4.2 -20.4 glutamate synthase large subunit compare
PFLU_RS27970 -4.2 -8.9 choline ABC transporter permease subunit compare
PFLU_RS27805 -4.1 -2.8 sarcosine oxidase subunit gamma family protein compare
PFLU_RS06310 -4.1 -4.9 sigma E protease regulator RseP compare
PFLU_RS20540 -4.0 -5.5 phosphoribosylanthranilate isomerase compare
PFLU_RS27880 -4.0 -6.7 dimethylglycine demethylation protein DgcB compare
PFLU_RS27885 -4.0 -10.1 dimethylglycine demethylation protein DgcA compare
PFLU_RS06055 -4.0 -2.1 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS10765 -4.0 -12.5 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS25640 -4.0 -9.3 ketol-acid reductoisomerase compare
PFLU_RS27890 -4.0 -7.6 hypothetical protein compare
PFLU_RS03240 -4.0 -13.8 copper-translocating P-type ATPase compare
PFLU_RS24765 -3.9 -20.1 2-isopropylmalate synthase compare
PFLU_RS26250 -3.9 -12.6 ferredoxin--NADP reductase compare
PFLU_RS28965 -3.9 -7.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS07650 -3.9 -11.4 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS04055 -3.9 -11.3 ABC transporter permease compare
PFLU_RS29515 -3.8 -9.6 RidA family protein compare
PFLU_RS04050 -3.8 -11.1 ABC transporter ATP-binding protein compare
PFLU_RS16780 -3.8 -15.3 glycine betaine/L-proline transporter ProP compare
PFLU_RS02590 -3.8 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27860 -3.7 -8.6 glycine-betaine demethylase subunit GbcB compare
PFLU_RS00180 -3.6 -4.3 tryptophan synthase subunit beta compare
PFLU_RS01610 -3.6 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS20290 -3.6 -2.1 integration host factor subunit alpha compare
PFLU_RS01605 -3.6 -4.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS04060 -3.5 -13.8 glycine betaine ABC transporter substrate-binding protein compare
PFLU_RS01900 -3.5 -4.8 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28695 -3.5 -8.5 phosphoglycerate dehydrogenase compare
PFLU_RS27975 -3.4 -5.9 choline ABC transporter ATP-binding protein compare
PFLU_RS00175 -3.4 -4.7 tryptophan synthase subunit alpha compare
PFLU_RS25360 -3.4 -8.5 glutamate 5-kinase compare
PFLU_RS29735 -3.4 -8.8 HlyC/CorC family transporter compare
PFLU_RS04470 -3.4 -9.3 histidinol dehydrogenase compare
PFLU_RS12980 -3.4 -4.6 nitrite/sulfite reductase compare
PFLU_RS03970 -3.4 -10.4 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS05655 -3.3 -4.0 DeoR/GlpR family transcriptional regulator compare
PFLU_RS12975 -3.3 -2.3 DUF934 domain-containing protein compare
PFLU_RS28655 -3.3 -8.0 HAD family hydrolase compare
PFLU_RS18000 -3.2 -2.2 AhpC/TSA family protein compare
PFLU_RS02790 -3.2 -2.3 TetR family transcriptional regulator compare
PFLU_RS25645 -3.2 -2.2 acetolactate synthase small subunit compare
PFLU_RS13120 -3.2 -1.8 hypothetical protein compare
PFLU_RS03665 -3.1 -5.6 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS07640 -3.1 -10.4 universal stress protein compare
PFLU_RS09535 -3.1 -1.4 TIGR03750 family conjugal transfer protein compare
PFLU_RS25815 -3.1 -2.7 transcription termination/antitermination protein NusA compare
PFLU_RS21995 -3.1 -4.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS03755 -3.1 -12.8 PDZ domain-containing protein compare
PFLU_RS01620 -3.1 -5.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01895 -3.1 -6.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS04935 -3.0 -6.0 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS28415 -3.0 -9.0 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
PFLU_RS27965 -3.0 -12.7 choline ABC transporter substrate-binding protein compare
PFLU_RS23310 -3.0 -8.1 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS23040 -3.0 -9.4 aminodeoxychorismate lyase compare
PFLU_RS21965 -2.9 -15.7 transporter compare
PFLU_RS23010 -2.9 -11.0 radical SAM protein compare
PFLU_RS29095 -2.9 -20.2 polyphosphate kinase 1 compare
PFLU_RS18505 -2.9 -6.9 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS07255 -2.9 -4.8 sulfurtransferase TusA family protein compare
PFLU_RS29780 -2.9 -6.7 acyl-CoA thioesterase compare
PFLU_RS24590 -2.9 -4.0 cytochrome c assembly protein compare
PFLU_RS22835 -2.9 -7.8 amidotransferase compare
PFLU_RS24025 -2.9 -11.9 quinolinate synthase NadA compare
PFLU_RS25715 -2.8 -3.4 RNA polymerase-binding protein DksA compare
PFLU_RS07655 -2.8 -5.3 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS20515 -2.7 -2.7 amidophosphoribosyltransferase compare
PFLU_RS22095 -2.7 -17.1 GTP diphosphokinase compare
PFLU_RS04150 -2.7 -6.7 DUF1043 family protein compare
PFLU_RS22520 -2.7 -2.6 GntR family transcriptional regulator compare
PFLU_RS00550 -2.7 -6.8 NAD(P) transhydrogenase subunit alpha compare
PFLU_RS27955 -2.7 -7.5 GlxA family transcriptional regulator compare
PFLU_RS13895 -2.7 -1.2 helix-turn-helix transcriptional regulator compare
PFLU_RS04065 -2.7 -9.0 ABC transporter permease compare
PFLU_RS25925 -2.7 -3.4 RnfH family protein compare
PFLU_RS28270 -2.6 -2.4 triphosphoribosyl-dephospho-CoA synthase compare
PFLU_RS22105 -2.6 -4.3 cysteine synthase CysM compare
PFLU_RS18395 -2.6 -2.5 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS20390 -2.6 -2.5 DUF1654 domain-containing protein compare
PFLU_RS08620 -2.6 -5.4 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS27640 -2.6 -1.9 alpha/beta fold hydrolase compare
PFLU_RS19170 -2.5 -1.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS28165 -2.5 -11.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01360 -2.5 -12.5 FdhF/YdeP family oxidoreductase compare
PFLU_RS18910 -2.5 -5.1 MarR family transcriptional regulator compare
PFLU_RS07755 -2.4 -6.7 heavy metal sensor histidine kinase compare
PFLU_RS19165 -2.4 -1.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS14725 -2.4 -7.6 hybrid sensor histidine kinase/response regulator compare
PFLU_RS20510 -2.4 -12.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS21060 -2.4 -4.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS08505 -2.4 -8.1 protease HtpX compare
PFLU_RS22740 -2.4 -2.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS09055 -2.4 -1.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS29875 -2.3 -14.7 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS29880 -2.3 -12.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS30510 -2.3 -4.4 glycosyltransferase family 4 protein compare
PFLU_RS27685 -2.3 -13.1 malate synthase G compare
PFLU_RS09195 -2.3 -13.0 acyl-CoA dehydrogenase compare
PFLU_RS01645 -2.3 -11.3 S41 family peptidase compare
PFLU_RS13010 -2.3 -3.1 Fe-S biogenesis protein NfuA compare
PFLU_RS24205 -2.3 -2.2 DNA binding protein compare
PFLU_RS17265 -2.3 -1.9 hypothetical protein compare
PFLU_RS00545 -2.2 -15.7 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta compare
PFLU_RS25730 -2.2 -9.0 PAS domain S-box protein compare
PFLU_RS23305 -2.2 -9.8 arginine N-succinyltransferase compare
PFLU_RS25750 -2.2 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS20625 -2.2 -2.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS00440 -2.2 -12.6 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28650 -2.1 -4.8 RNA pyrophosphohydrolase compare
PFLU_RS02365 -2.1 -9.4 glycosyltransferase compare
PFLU_RS00415 -2.1 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29885 -2.1 -10.0 LysR family transcriptional regulator compare
PFLU_RS18610 -2.0 -11.9 isocitrate lyase compare
PFLU_RS03770 -2.0 -11.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS27375 -2.0 -5.5 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS29480 -2.0 -9.4 exodeoxyribonuclease III compare
PFLU_RS02180 -2.0 -1.2 thioredoxin TrxC compare
PFLU_RS26635 -2.0 -4.8 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS08630 -2.0 -6.1 molybdopterin molybdotransferase MoeA compare
PFLU_RS23380 -2.0 -1.4 HAD-IB family hydrolase compare
PFLU_RS22715 -2.0 -12.0 aminodeoxychorismate synthase component I compare
PFLU_RS01685 -2.0 -4.3 nitrogen regulation protein NR(I) compare
PFLU_RS27650 -1.9 -6.6 biotin synthase BioB compare
PFLU_RS07665 -1.9 -2.6 type I DNA topoisomerase compare
PFLU_RS00555 -1.9 -7.2 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
PFLU_RS30535 -1.9 -3.8 DUF2897 family protein compare
PFLU_RS03645 -1.9 -8.7 tetratricopeptide repeat protein compare
PFLU_RS29420 -1.9 -10.5 aldehyde dehydrogenase compare
PFLU_RS19550 -1.9 -1.1 ABC transporter ATP-binding protein compare
PFLU_RS04325 -1.9 -9.7 ribonuclease G compare
PFLU_RS28760 -1.9 -11.2 ABC transporter permease subunit compare
PFLU_RS01625 -1.9 -1.8 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS05250 -1.9 -1.8 elongation factor 4 compare
PFLU_RS08625 -1.9 -4.1 molybdenum cofactor biosynthesis protein B compare
PFLU_RS30725 -1.9 -3.5 DUF1652 domain-containing protein compare
PFLU_RS06955 -1.9 -5.6 helix-turn-helix domain-containing protein compare
PFLU_RS26595 -1.9 -2.2 lipoprotein compare
PFLU_RS07225 -1.9 -11.8 L-aspartate oxidase compare
PFLU_RS06395 -1.9 -7.9 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
PFLU_RS04930 -1.8 -9.7 PhoH family protein compare
PFLU_RS30790 -1.8 -2.2 hypothetical protein compare
PFLU_RS00065 -1.8 -7.6 lysophospholipid acyltransferase compare
PFLU_RS04220 -1.8 -8.0 FadR family transcriptional regulator compare
PFLU_RS28765 -1.8 -9.0 polyamine ABC transporter ATP-binding protein compare
PFLU_RS21985 -1.8 -3.7 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS19175 -1.8 -6.9 trigger factor compare
PFLU_RS20845 -1.8 -2.0 hypothetical protein compare
PFLU_RS07970 -1.8 -9.4 LOG family protein compare
PFLU_RS18250 -1.8 -3.1 DUF2160 domain-containing protein compare
PFLU_RS19375 -1.8 -8.8 branched-chain amino acid aminotransferase compare
PFLU_RS01365 -1.8 -6.7 formate dehydrogenase accessory sulfurtransferase FdhD compare
PFLU_RS27795 -1.8 -6.4 formaldehyde dehydrogenase, glutathione-independent compare
PFLU_RS22630 -1.8 -12.2 phosphoenolpyruvate synthase compare
PFLU_RS29310 -1.8 -1.1 accessory factor UbiK family protein compare
PFLU_RS02825 -1.8 -1.6 phosphate starvation-inducible protein PsiF compare
PFLU_RS18585 -1.8 -1.4 high frequency lysogenization protein HflD compare
PFLU_RS21260 -1.8 -4.6 DUF3509 domain-containing protein compare
PFLU_RS04445 -1.7 -4.3 ABC transporter substrate-binding protein compare
PFLU_RS05690 -1.7 -1.2 Grx4 family monothiol glutaredoxin compare
PFLU_RS07645 -1.7 -4.1 hypothetical protein compare
PFLU_RS16220 -1.7 -7.0 GlxA family transcriptional regulator compare
PFLU_RS01390 -1.7 -5.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS23920 -1.7 -1.3 septation protein A compare
PFLU_RS28285 -1.7 -2.2 hypothetical protein compare
PFLU_RS10405 -1.7 -2.4 helix-turn-helix transcriptional regulator compare
PFLU_RS31635 -1.7 -2.4 IS21 family transposase compare
PFLU_RS08410 -1.7 -6.9 HTH-type transcriptional regulator CysB compare
PFLU_RS23240 -1.7 -6.7 magnesium transporter compare
PFLU_RS01615 -1.7 -2.9 DUF2164 domain-containing protein compare
PFLU_RS05880 -1.7 -5.0 CinA family protein compare
PFLU_RS21495 -1.7 -1.6 TlpA family protein disulfide reductase compare
PFLU_RS09980 -1.6 -10.1 peptidase S41 compare
PFLU_RS18940 -1.6 -7.5 acyl-CoA dehydrogenase compare
PFLU_RS28755 -1.6 -7.4 ABC transporter permease subunit compare
PFLU_RS28470 -1.6 -2.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS03765 -1.6 -7.6 sulfate adenylyltransferase subunit CysD compare
PFLU_RS11605 -1.6 -4.5 helix-turn-helix transcriptional regulator compare


Specific Phenotypes

For 23 genes in this experiment

For stress Betaine in Pseudomonas fluorescens SBW25-INTG

For stress Betaine across organisms