Experiment set13IT040 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 0.1 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS25425 +1.5 1.3 arginine repressor compare
BWI76_RS26590 +1.4 1.7 transcriptional regulator compare
BWI76_RS05075 +1.3 0.7 type II secretion system protein GspG compare
BWI76_RS11700 +1.2 1.7 hypothetical protein compare
BWI76_RS13955 +1.1 2.2 hypothetical protein compare
BWI76_RS07475 +1.1 2.0 DNA-binding transcriptional regulator RamA compare
BWI76_RS07985 +1.0 1.3 fluoride ion transporter CrcB compare
BWI76_RS01995 +1.0 1.7 AraC family transcriptional regulator compare
BWI76_RS20940 +1.0 2.4 uracil/xanthine transporter compare
BWI76_RS18605 +1.0 1.6 oxidoreductase molybdopterin-binding protein compare
BWI76_RS21130 +1.0 2.3 Fe-S assembly protein IscX compare
BWI76_RS11335 +1.0 1.6 tautomerase compare
BWI76_RS19865 +1.0 2.4 ecotin compare
BWI76_RS11780 +1.0 1.9 2-deoxyglucose-6-phosphatase compare
BWI76_RS25545 +1.0 2.0 hypothetical protein compare
BWI76_RS09065 +1.0 3.1 sugar phosphatase SupH compare
BWI76_RS11260 +0.9 1.8 hypothetical protein compare
BWI76_RS23885 +0.9 0.9 2-octaprenylphenol hydroxylase compare
BWI76_RS15235 +0.9 2.8 hypothetical protein compare
BWI76_RS09520 +0.9 1.8 arginine ABC transporter ATP-binding protein ArtP compare
BWI76_RS13330 +0.9 1.0 tellurite resistance methyltransferase TehB compare
BWI76_RS27455 +0.9 1.9 DUF805 domain-containing protein compare
BWI76_RS03610 +0.9 1.9 hypothetical protein compare
BWI76_RS20375 +0.9 1.4 membrane protein compare
BWI76_RS15035 +0.9 1.7 metal ABC transporter permease compare
BWI76_RS10505 +0.8 4.7 putative guanine/xanthin permease compare
BWI76_RS11675 +0.8 1.5 arginine N-succinyltransferase compare
BWI76_RS13685 +0.8 2.1 IclR family transcriptional regulator compare
BWI76_RS11810 +0.8 2.1 outer membrane protein OmpW compare
BWI76_RS15290 +0.8 0.8 transcriptional regulator compare
BWI76_RS15285 +0.8 3.9 stress protection protein MarC compare
BWI76_RS00710 +0.8 1.0 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS07255 +0.8 2.0 hypothetical protein compare
BWI76_RS15960 +0.8 3.2 LysR family transcriptional regulator compare
BWI76_RS15790 +0.8 2.8 replication protein compare
BWI76_RS11125 +0.8 1.4 metal-dependent hydrolase compare
BWI76_RS10055 +0.8 1.2 AraC family transcriptional regulator compare
BWI76_RS06340 +0.8 2.0 hypothetical protein compare
BWI76_RS05970 +0.8 2.1 hypothetical protein compare
BWI76_RS01380 +0.8 1.6 YigZ family protein compare
BWI76_RS24810 +0.8 2.4 hypothetical protein compare
BWI76_RS19375 +0.8 0.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS13320 +0.8 1.8 putative LpxA-like enzyme compare
BWI76_RS13405 +0.8 2.4 spermidine/putrescine ABC transporter substrate-binding protein compare
BWI76_RS12500 +0.7 1.8 dipeptide epimerase compare
BWI76_RS23020 +0.7 1.8 cobalamin biosynthesis protein CbiQ compare
BWI76_RS22935 +0.7 0.9 L-fucose mutarotase compare
BWI76_RS18270 +0.7 1.8 hypothetical protein compare
BWI76_RS12515 +0.7 0.6 protease compare
BWI76_RS18870 +0.7 1.3 protein NifZ compare
BWI76_RS12575 +0.7 2.2 FAD-dependent oxidoreductase compare
BWI76_RS24240 +0.7 1.9 hypothetical protein compare
BWI76_RS13095 +0.7 1.0 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS19360 +0.7 3.3 glucose dehydrogenase compare
BWI76_RS13975 +0.7 1.1 urea carboxylase compare
BWI76_RS15075 +0.7 2.8 non-ribosomal peptide synthase compare
BWI76_RS19850 +0.7 1.3 tRNA-Pro compare
BWI76_RS18385 +0.7 1.1 hypothetical protein compare
BWI76_RS13170 +0.7 1.1 methyltransferase compare
BWI76_RS12585 +0.7 3.3 transcriptional regulator compare
BWI76_RS27670 +0.7 1.8 LysR family transcriptional regulator compare
BWI76_RS24625 +0.7 3.5 hypothetical protein compare
BWI76_RS15785 +0.7 3.2 replication protein compare
BWI76_RS14000 +0.7 2.5 glutamine amidotransferase compare
BWI76_RS20285 +0.7 1.9 glutathione S-transferase compare
BWI76_RS13990 +0.7 3.9 allophanate hydrolase compare
BWI76_RS10770 +0.7 1.8 pyrimidine utilization protein C compare
BWI76_RS23895 +0.7 0.7 Xaa-Pro aminopeptidase compare
BWI76_RS26065 +0.7 1.3 phosphoglycolate phosphatase compare
BWI76_RS18875 +0.7 1.2 nitrogen fixation protein NifM compare
BWI76_RS12885 +0.7 2.6 hypothetical protein compare
BWI76_RS08800 +0.7 2.1 phosphoethanolamine transferase EptA compare
BWI76_RS03835 +0.7 2.3 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS26020 +0.6 2.5 peptidylprolyl isomerase A compare
BWI76_RS11450 +0.6 2.6 cyanate MFS transporter compare
BWI76_RS22210 +0.6 2.6 murein transglycosylase B compare
BWI76_RS03175 +0.6 1.5 hypothetical protein compare
BWI76_RS20785 +0.6 0.7 ethanolamine utilization protein EutJ compare
BWI76_RS04605 +0.6 1.1 thiamine ABC transporter ATP-binding protein compare
BWI76_RS23255 +0.6 3.4 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS01585 +0.6 3.4 transcriptional regulator compare
BWI76_RS06250 +0.6 2.6 alpha-glycosidase compare
BWI76_RS16470 +0.6 1.2 transcriptional repressor NemR compare
BWI76_RS02690 +0.6 1.3 hypothetical protein compare
BWI76_RS16905 +0.6 1.1 acetaldehyde dehydrogenase (acetylating) compare
BWI76_RS06505 +0.6 2.3 hypothetical protein compare
BWI76_RS24885 +0.6 0.6 PTS galactitol transporter subunit IIB compare
BWI76_RS00565 +0.6 1.4 branched-chain amino acid transport compare
BWI76_RS14285 +0.6 2.1 IS3 family transposase compare
BWI76_RS11435 +0.6 1.4 hypothetical protein compare
BWI76_RS23120 +0.6 1.9 propanediol dehydratase medium subunit compare
BWI76_RS17405 +0.6 2.4 cation transport regulator compare
BWI76_RS04965 +0.6 2.2 ABC transporter ATP-binding protein compare
BWI76_RS16035 +0.6 1.0 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS07855 +0.6 1.6 PucR family transcriptional regulator compare
BWI76_RS11645 +0.6 3.2 ABC transporter substrate-binding protein compare
BWI76_RS13135 +0.6 2.1 3-oxoadipyl-CoA thiolase compare
BWI76_RS16445 +0.6 1.6 auxiliary transporter membrane fusion protein compare
BWI76_RS23860 +0.6 1.5 protein disulfide oxidoreductase compare
BWI76_RS07955 +0.6 1.4 nucleoside diphosphate kinase regulator compare
BWI76_RS20160 +0.6 1.4 NADH-quinone oxidoreductase subunit H compare
BWI76_RS24825 +0.6 1.4 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS08670 +0.6 3.3 N-acetyltransferase compare
BWI76_RS02410 +0.6 0.5 EF-P beta-lysylation protein EpmB compare
BWI76_RS24945 +0.6 1.0 glutamine amidotransferase compare
BWI76_RS11710 +0.6 2.4 nucleotide excision repair endonuclease compare
BWI76_RS17665 +0.6 1.4 proteasome-type protease compare
BWI76_RS23005 +0.6 1.4 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS12480 +0.6 2.3 TIGR01620 family protein compare
BWI76_RS05165 +0.6 2.3 cobalamin-binding protein compare
BWI76_RS22185 +0.6 1.9 hypothetical protein compare
BWI76_RS20135 +0.6 0.9 NADH-quinone oxidoreductase subunit M compare
BWI76_RS12590 +0.6 3.2 helix-turn-helix-type transcriptional regulator compare
BWI76_RS25865 +0.6 2.3 ferredoxin compare
BWI76_RS03850 +0.6 1.9 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BWI76_RS02255 +0.6 2.7 chaperone-modulator protein CbpM compare
BWI76_RS19390 +0.6 1.9 LysR family transcriptional regulator compare
BWI76_RS15845 +0.6 0.5 hypothetical protein compare
BWI76_RS10260 +0.6 1.9 creatinase compare
BWI76_RS16160 +0.6 1.4 LysR family transcriptional regulator compare
BWI76_RS11895 +0.6 1.0 AraC family transcriptional regulator compare
BWI76_RS19890 +0.6 1.5 alpha-ketoglutarate-dependent dioxygenase AlkB compare
BWI76_RS18755 +0.6 0.7 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS26480 +0.6 2.6 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS19330 +0.6 0.6 HAD family hydrolase compare
BWI76_RS13070 +0.6 1.6 hypothetical protein compare
BWI76_RS13275 +0.6 0.9 hypothetical protein compare
BWI76_RS09490 +0.6 1.5 DNA-binding response regulator compare
BWI76_RS19690 +0.6 1.2 LysR family transcriptional regulator compare
BWI76_RS09085 +0.6 2.4 molybdopterin molybdenumtransferase MoeA compare
BWI76_RS16175 +0.6 1.8 p-aminobenzoyl-glutamate transporter compare
BWI76_RS15080 +0.6 4.6 hypothetical protein compare
BWI76_RS08345 +0.6 1.5 Nif3-like dinuclear metal center protein compare
BWI76_RS18765 +0.6 1.9 FUSC family protein compare
BWI76_RS17470 +0.5 2.3 MerR family transcriptional regulator compare
BWI76_RS14435 +0.5 0.8 glutamine ABC transporter ATP-binding protein compare
BWI76_RS06285 +0.5 2.1 peroxiredoxin compare
BWI76_RS24575 +0.5 0.8 hypothetical protein compare
BWI76_RS17645 +0.5 1.6 hypothetical protein compare
BWI76_RS24035 +0.5 1.2 hypothetical protein compare
BWI76_RS07735 +0.5 2.7 MFS transporter compare
BWI76_RS00430 +0.5 2.5 GNAT family N-acetyltransferase compare
BWI76_RS10375 +0.5 1.5 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS05895 +0.5 1.3 phosphonate ABC transporter, permease protein PhnE compare
BWI76_RS12985 +0.5 1.0 transcriptional regulator compare
BWI76_RS11770 +0.5 1.0 hypothetical protein compare
BWI76_RS27700 +0.5 1.7 multidrug transporter compare
BWI76_RS20035 +0.5 1.6 hypothetical protein compare
BWI76_RS06950 +0.5 2.1 ABC transporter ATP-binding protein compare
BWI76_RS21390 +0.5 1.5 thiol disulfide reductase thioredoxin compare
BWI76_RS07885 +0.5 2.5 sugar ABC transporter permease compare
BWI76_RS12565 +0.5 1.7 SAM-dependent methyltransferase compare
BWI76_RS01285 +0.5 1.6 amino acid ABC transporter substrate-binding protein compare
BWI76_RS09050 +0.5 1.1 MFS transporter compare
BWI76_RS18225 +0.5 1.9 universal stress protein C compare
BWI76_RS26980 +0.5 1.7 cold-shock protein compare
BWI76_RS25945 +0.5 2.5 ABC transporter ATP-binding protein compare
BWI76_RS13225 +0.5 2.1 hypothetical protein compare
BWI76_RS27425 +0.5 0.8 DNA-directed RNA polymerase subunit omega compare
BWI76_RS16690 +0.5 2.3 peptide ABC transporter permease compare
BWI76_RS26015 +0.5 1.3 DUF2559 domain-containing protein compare
BWI76_RS06735 +0.5 1.1 50S ribosomal protein L31 compare
BWI76_RS26930 +0.5 2.1 biotin sulfoxide reductase compare
BWI76_RS16080 +0.5 1.9 LysR family transcriptional regulator compare
BWI76_RS06230 +0.5 2.0 DNA-binding response regulator compare
BWI76_RS11690 +0.5 2.0 succinylglutamate desuccinylase compare
BWI76_RS09925 +0.5 1.5 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase compare
BWI76_RS25480 +0.5 2.2 ribonuclease E/G compare
BWI76_RS06065 +0.5 1.6 taurine ABC transporter substrate-binding protein compare
BWI76_RS12580 +0.5 1.8 oxidoreductase compare
BWI76_RS16095 +0.5 1.0 thiamine biosynthesis protein ApbE compare
BWI76_RS13425 +0.5 2.0 1-pyrroline dehydrogenase compare
BWI76_RS20880 +0.5 1.1 esterase compare
BWI76_RS20900 +0.5 0.6 outer membrane protein assembly factor BamC compare
BWI76_RS20050 +0.5 1.1 hypothetical protein compare
BWI76_RS14820 +0.5 0.9 LysR family transcriptional regulator compare
BWI76_RS11185 +0.5 1.7 ligand-gated channel protein compare
BWI76_RS12615 +0.5 2.2 LysR family transcriptional regulator compare
BWI76_RS13570 +0.5 2.2 mandelate racemase/muconate lactonizing protein compare
BWI76_RS24665 +0.5 1.3 LsrR family transcriptional regulator compare
BWI76_RS08820 +0.5 1.5 molybdenum cofactor biosynthesis protein compare
BWI76_RS04985 +0.5 1.5 aspartate 1-decarboxylase compare
BWI76_RS16140 +0.5 1.1 3-oxoadipate CoA-transferase compare
BWI76_RS11370 +0.5 0.9 iron-dicitrate transporter subunit FecD compare
BWI76_RS02870 +0.5 1.8 hypothetical protein compare
BWI76_RS10840 +0.5 1.5 membrane protein compare
BWI76_RS10040 +0.5 1.3 heat-shock protein HspQ compare
BWI76_RS09020 +0.5 1.6 6-phospho-beta-glucosidase compare
BWI76_RS12440 +0.5 2.4 MFS transporter compare
BWI76_RS26685 +0.5 1.5 glutathione-disulfide reductase compare
BWI76_RS02875 +0.5 1.7 membrane protein compare
BWI76_RS15980 +0.5 1.2 lysine transporter LysE compare
BWI76_RS22215 +0.5 2.3 PTS sorbitol transporter subunit IIC compare
BWI76_RS10780 +0.5 2.4 pyrimidine utilization protein A compare
BWI76_RS10295 +0.5 1.1 short chain dehydrogenase/reductase family oxidoreductase compare
BWI76_RS15280 +0.5 2.5 sugar transporter compare
BWI76_RS27620 +0.5 1.8 hypothetical protein compare
BWI76_RS11900 +0.5 0.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS15260 +0.5 0.7 hypothetical protein compare
BWI76_RS05885 +0.5 1.7 anion permease compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella in Klebsiella michiganensis M5al

For mixed community Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella across organisms