Experiment set13IT033 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS13955 +1.9 3.0 hypothetical protein compare
BWI76_RS23020 +1.7 3.0 cobalamin biosynthesis protein CbiQ compare
BWI76_RS26805 +1.7 2.0 cellulose biosynthesis protein BcsF compare
BWI76_RS16315 +1.5 1.3 SirA-like protein compare
BWI76_RS24825 +1.4 2.9 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS07475 +1.4 2.0 DNA-binding transcriptional regulator RamA compare
BWI76_RS16015 +1.4 3.2 pheromone autoinducer 2 transporter compare
BWI76_RS15950 +1.3 0.8 dethiobiotin synthase compare
BWI76_RS25425 +1.3 0.8 arginine repressor compare
BWI76_RS15290 +1.3 1.0 transcriptional regulator compare
BWI76_RS01540 +1.3 2.3 thiamine biosynthesis protein ThiS compare
BWI76_RS14970 +1.3 1.6 pyrroline-5-carboxylate reductase compare
BWI76_RS06340 +1.2 2.4 hypothetical protein compare
BWI76_RS15445 +1.2 3.3 hypothetical protein compare
BWI76_RS22235 +1.2 2.4 transcriptional regulator GutM compare
BWI76_RS14825 +1.2 2.2 dienelactone hydrolase family protein compare
BWI76_RS22185 +1.2 2.4 hypothetical protein compare
BWI76_RS02225 +1.2 2.4 phosphonate C-P lyase system protein PhnG compare
BWI76_RS04095 +1.2 2.7 dUMP phosphatase compare
BWI76_RS01585 +1.2 3.9 transcriptional regulator compare
BWI76_RS11920 +1.2 2.8 hypothetical protein compare
BWI76_RS06125 +1.2 5.4 D-alanine--D-alanine ligase A compare
BWI76_RS21130 +1.1 1.9 Fe-S assembly protein IscX compare
BWI76_RS11700 +1.1 1.1 hypothetical protein compare
BWI76_RS12585 +1.1 3.7 transcriptional regulator compare
BWI76_RS15035 +1.1 1.6 metal ABC transporter permease compare
BWI76_RS22935 +1.1 0.8 L-fucose mutarotase compare
BWI76_RS11735 +1.1 1.7 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS10835 +1.1 1.0 hypothetical protein compare
BWI76_RS01995 +1.1 1.3 AraC family transcriptional regulator compare
BWI76_RS23875 +1.1 1.7 glycine cleavage system protein H compare
BWI76_RS20720 +1.1 1.2 hypothetical protein compare
BWI76_RS06505 +1.1 5.6 hypothetical protein compare
BWI76_RS23195 +1.1 2.9 ethanolamine utilization protein EutP compare
BWI76_RS25935 +1.1 3.0 glutathione-regulated potassium-efflux system ancillary protein KefG compare
BWI76_RS02180 +1.1 1.0 hypothetical protein compare
BWI76_RS08605 +1.0 1.2 phosphoglyceromutase compare
BWI76_RS15235 +1.0 1.6 hypothetical protein compare
BWI76_RS25365 +1.0 3.9 serine endoprotease DegQ compare
BWI76_RS10055 +1.0 1.3 AraC family transcriptional regulator compare
BWI76_RS11335 +1.0 1.2 tautomerase compare
BWI76_RS22315 +1.0 2.8 formate hydrogenlyase complex iron-sulfur subunit compare
BWI76_RS23970 +1.0 1.6 mechanosensitive ion channel protein MscS compare
BWI76_RS22470 +1.0 2.9 transporter permease compare
BWI76_RS12825 +1.0 2.1 hypothetical protein compare
BWI76_RS09530 +1.0 0.9 hypothetical protein compare
BWI76_RS05950 +1.0 1.3 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS17665 +1.0 2.2 proteasome-type protease compare
BWI76_RS27745 +1.0 1.9 PTS sugar transporter subunit IIB compare
BWI76_RS20795 +1.0 1.3 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS15900 +1.0 2.6 hypothetical protein compare
BWI76_RS16445 +1.0 2.6 auxiliary transporter membrane fusion protein compare
BWI76_RS01380 +1.0 1.2 YigZ family protein compare
BWI76_RS15450 +1.0 1.2 hypothetical protein compare
BWI76_RS13745 +1.0 1.7 formate dehydrogenase subunit beta compare
BWI76_RS11485 +1.0 4.2 serine protein kinase PrkA compare
BWI76_RS24810 +1.0 2.6 hypothetical protein compare
BWI76_RS24035 +1.0 2.6 hypothetical protein compare
BWI76_RS21040 +1.0 2.1 peptidase M4 compare
BWI76_RS11710 +1.0 2.2 nucleotide excision repair endonuclease compare
BWI76_RS13685 +1.0 1.3 IclR family transcriptional regulator compare
BWI76_RS07385 +1.0 1.9 short-chain dehydrogenase/reductase SDR compare
BWI76_RS20390 +0.9 2.9 erythronate-4-phosphate dehydrogenase compare
BWI76_RS18755 +0.9 0.8 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS18360 +0.9 1.5 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS09515 +0.9 1.1 arginine ABC transporter substrate-binding protein compare
BWI76_RS09315 +0.9 1.2 hypothetical protein compare
BWI76_RS17955 +0.9 2.0 hypothetical protein compare
BWI76_RS20940 +0.9 2.2 uracil/xanthine transporter compare
BWI76_RS00075 +0.9 2.0 N-acetylmannosamine-6-phosphate 2-epimerase compare
BWI76_RS14615 +0.9 1.2 hypothetical protein compare
BWI76_RS19360 +0.9 1.9 glucose dehydrogenase compare
BWI76_RS01650 +0.9 1.2 acetyltransferase compare
BWI76_RS02700 +0.9 5.6 D-serine/D-alanine/glycine transporter compare
BWI76_RS11185 +0.9 2.6 ligand-gated channel protein compare
BWI76_RS24330 +0.9 1.9 TIGR00156 family protein compare
BWI76_RS24240 +0.9 1.7 hypothetical protein compare
BWI76_RS04840 +0.9 2.4 prepilin peptidase-dependent pilin compare
BWI76_RS26440 +0.9 0.6 hypothetical protein compare
BWI76_RS22640 +0.9 2.3 hypothetical protein compare
BWI76_RS23320 +0.9 1.1 hypothetical protein compare
BWI76_RS07790 +0.9 1.4 plasmid stabilization protein compare
BWI76_RS13805 +0.9 2.8 inorganic diphosphatase compare
BWI76_RS26575 +0.9 3.1 universal stress protein B compare
BWI76_RS09015 +0.9 3.3 aldo/keto reductase compare
BWI76_RS11675 +0.9 1.2 arginine N-succinyltransferase compare
BWI76_RS13290 +0.9 1.4 protocatechuate 3,4-dioxygenase subunit beta compare
BWI76_RS26875 +0.9 1.9 dipeptide ABC transporter permease DppC compare
BWI76_RS16120 +0.9 1.9 4-carboxymuconolactone decarboxylase compare
BWI76_RS22280 +0.9 2.0 formate dehydrogenase-H ferredoxin subunit compare
BWI76_RS12330 +0.9 2.8 hypothetical protein compare
BWI76_RS21340 +0.9 1.1 SoxR reducing system protein RseC compare
BWI76_RS14575 +0.9 1.7 TENA/THI-4 family protein compare
BWI76_RS00710 +0.9 0.8 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS13630 +0.9 2.9 ABC transporter compare
BWI76_RS25245 +0.9 1.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS07540 +0.9 2.8 dipeptide ABC transporter ATP-binding protein DppD compare
BWI76_RS12420 +0.9 0.7 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS17350 +0.9 2.0 DNA-binding response regulator compare
BWI76_RS02920 +0.8 1.3 addiction module toxin RelE compare
BWI76_RS11150 +0.8 1.0 membrane protein compare
BWI76_RS26020 +0.8 2.5 peptidylprolyl isomerase A compare
BWI76_RS27520 +0.8 1.6 sodium/glutamate symporter compare
BWI76_RS13170 +0.8 1.9 methyltransferase compare
BWI76_RS14065 +0.8 0.5 hypothetical protein compare
BWI76_RS07865 +0.8 2.0 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS19865 +0.8 1.7 ecotin compare
BWI76_RS23185 +0.8 1.2 propanediol utilization: polyhedral bodies pduT compare
BWI76_RS13590 +0.8 1.0 hypothetical protein compare
BWI76_RS05465 +0.8 0.8 amidohydrolase compare
BWI76_RS24955 +0.8 1.4 hypothetical protein compare
BWI76_RS04010 +0.8 2.4 hypothetical protein compare
BWI76_RS18270 +0.8 1.5 hypothetical protein compare
BWI76_RS17470 +0.8 2.5 MerR family transcriptional regulator compare
BWI76_RS07645 +0.8 1.1 short-chain dehydrogenase/reductase compare
BWI76_RS11480 +0.8 4.0 hypothetical protein compare
BWI76_RS00025 +0.8 0.9 hypothetical protein compare
BWI76_RS16990 +0.8 1.6 ABC transporter ATP-binding protein compare
BWI76_RS16680 +0.8 2.5 ABC transporter substrate-binding protein compare
BWI76_RS00995 +0.8 2.0 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS23780 +0.8 1.7 aromatic acid decarboxylase compare
BWI76_RS25480 +0.8 2.4 ribonuclease E/G compare
BWI76_RS23190 +0.8 2.3 propanediol utilization protein PduU compare
BWI76_RS05895 +0.8 1.7 phosphonate ABC transporter, permease protein PhnE compare
BWI76_RS12580 +0.8 1.9 oxidoreductase compare
BWI76_RS09680 +0.8 1.5 dimethyl sulfoxide reductase subunit A compare
BWI76_RS13275 +0.8 0.9 hypothetical protein compare
BWI76_RS25000 +0.8 0.9 malonate decarboxylase acyl carrier protein compare
BWI76_RS12860 +0.8 1.1 hypothetical protein compare
BWI76_RS01330 +0.8 1.8 twin-arginine translocase subunit TatC compare
BWI76_RS13425 +0.8 2.3 1-pyrroline dehydrogenase compare
BWI76_RS04985 +0.8 1.3 aspartate 1-decarboxylase compare
BWI76_RS18090 +0.8 1.2 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS07855 +0.8 1.7 PucR family transcriptional regulator compare
BWI76_RS25220 +0.8 1.6 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS27240 +0.8 3.7 hypothetical protein compare
BWI76_RS14840 +0.8 2.8 hypothetical protein compare
BWI76_RS08345 +0.8 1.2 Nif3-like dinuclear metal center protein compare
BWI76_RS09445 +0.8 2.9 NADPH-dependent oxidoreductase compare
BWI76_RS04605 +0.8 0.9 thiamine ABC transporter ATP-binding protein compare
BWI76_RS15975 +0.8 0.7 hypothetical protein compare
BWI76_RS06485 +0.8 1.1 cytochrome o ubiquinol oxidase subunit III compare
BWI76_RS21285 +0.8 1.4 HAD family hydrolase compare
BWI76_RS01285 +0.8 2.0 amino acid ABC transporter substrate-binding protein compare
BWI76_RS17225 +0.8 3.1 oligopeptide ABC transporter ATP-binding protein OppD compare
BWI76_RS11690 +0.8 2.9 succinylglutamate desuccinylase compare
BWI76_RS18335 +0.8 3.5 DNA-binding response regulator compare
BWI76_RS04050 +0.8 2.0 hydroxamate siderophore iron reductase FhuF compare
BWI76_RS00420 +0.8 2.0 hypothetical protein compare
BWI76_RS08825 +0.8 1.8 cyclic pyranopterin monophosphate synthase MoaC compare
BWI76_RS09765 +0.8 1.4 metalloprotease compare
BWI76_RS20025 +0.8 1.8 HAMP domain-containing histidine kinase compare
BWI76_RS15960 +0.8 1.4 LysR family transcriptional regulator compare
BWI76_RS20925 +0.8 2.8 peptidase M48 compare
BWI76_RS14775 +0.8 1.5 creatinine amidohydrolase compare
BWI76_RS26015 +0.8 1.4 DUF2559 domain-containing protein compare
BWI76_RS07985 +0.8 0.6 fluoride ion transporter CrcB compare
BWI76_RS02745 +0.8 0.8 hypothetical protein compare
BWI76_RS23000 +0.8 2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BWI76_RS17720 +0.7 0.3 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS13135 +0.7 1.8 3-oxoadipyl-CoA thiolase compare
BWI76_RS20565 +0.7 1.4 hypothetical protein compare
BWI76_RS23030 +0.7 1.5 cobalamin biosynthesis protein CbiM compare
BWI76_RS03545 +0.7 2.7 QacE family quaternary ammonium compound efflux SMR transporter compare
BWI76_RS03515 +0.7 2.1 hypothetical protein compare
BWI76_RS11260 +0.7 1.0 hypothetical protein compare
BWI76_RS23270 +0.7 4.3 phosphoenolpyruvate--protein phosphotransferase PtsP compare
BWI76_RS22005 +0.7 3.3 hypothetical protein compare
BWI76_RS07885 +0.7 2.2 sugar ABC transporter permease compare
BWI76_RS22925 +0.7 2.6 L-fucose isomerase compare
BWI76_RS09865 +0.7 2.8 MBL fold hydrolase compare
BWI76_RS08615 +0.7 2.6 galactokinase compare
BWI76_RS04900 +0.7 1.3 DUF2950 domain-containing protein compare
BWI76_RS19690 +0.7 1.0 LysR family transcriptional regulator compare
BWI76_RS20115 +0.7 1.5 hypothetical protein compare
BWI76_RS15835 +0.7 0.7 hypothetical protein compare
BWI76_RS13975 +0.7 0.8 urea carboxylase compare
BWI76_RS16000 +0.7 0.9 multidrug transporter subunit MdtI compare
BWI76_RS23455 +0.7 1.1 Na(+)-translocating NADH-quinone reductase subunit E compare
BWI76_RS05800 +0.7 1.3 phage transcriptional activator, Ogr/delta compare
BWI76_RS08315 +0.7 1.2 K+-transporting ATPase subunit B compare
BWI76_RS03815 +0.7 1.6 hypothetical protein compare
BWI76_RS13065 +0.7 2.0 LysR family transcriptional regulator compare
BWI76_RS15080 +0.7 5.2 hypothetical protein compare
BWI76_RS11770 +0.7 1.0 hypothetical protein compare
BWI76_RS13515 +0.7 2.6 amino acid permease compare
BWI76_RS17220 +0.7 2.4 oligopeptide ABC transporter ATP-binding protein OppF compare
BWI76_RS00290 +0.7 2.7 Ribokinase (EC 2.7.1.15) (from data) compare
BWI76_RS10285 +0.7 1.7 family 3 extracellular solute-binding protein compare
BWI76_RS06545 +0.7 1.2 peptidylprolyl isomerase compare
BWI76_RS16090 +0.7 1.1 two-component system response regulator DcuR compare
BWI76_RS10680 +0.7 2.0 tartrate dehydrogenase compare
BWI76_RS19300 +0.7 2.6 ABC transporter ATP-binding protein compare
BWI76_RS17325 +0.7 2.6 nitrate reductase molybdenum cofactor assembly chaperone compare
BWI76_RS16360 +0.7 0.4 electron transport complex subunit RsxB compare
BWI76_RS19480 +0.7 1.5 transcriptional regulator compare
BWI76_RS11750 +0.7 1.5 chitooligosaccharide deacetylase compare
BWI76_RS12090 +0.7 0.7 HNH endonuclease compare
BWI76_RS03850 +0.7 2.0 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BWI76_RS26095 +0.7 0.3 shikimate kinase compare


Specific Phenotypes

For 1 genes in this experiment

For mixed community Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella in Klebsiella michiganensis M5al

For mixed community Mixed culture; Microbacterium sp. AnTP90 3:1 starting OD to Klebsiella across organisms