Experiment set13IT030 for Shewanella oneidensis MR-1
Sodium fumarate electron acceptor
Group: ground_controlMedia: SBM_defined + Sodium D,L-Lactate (20 mM) + Sodium Fumarate dibasic (40 mM), pH=7.2
Culturing: MR1_ML3b, Bioserve FPA, Anaerobic, at 30 (C)
By: Michael Dougherty on 28-Jun-18
Specific Phenotypes
For 2 genes in this experiment
For ground_control Sodium D,L-Lactate in Shewanella oneidensis MR-1
For ground_control Sodium D,L-Lactate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Ammonia assimilation | 1 |
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Glutamate metabolism
- Nitrogen metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamate biosynthesis I | 2 | 2 | 2 |
| L-glutamine degradation I | 1 | 1 | 1 |
| L-glutamine degradation II | 1 | 1 | 1 |
| ammonia assimilation cycle III | 3 | 3 | 2 |
| L-glutamate and L-glutamine biosynthesis | 7 | 6 | 2 |
| glutaminyl-tRNAgln biosynthesis via transamidation | 4 | 1 | 1 |
| L-asparagine biosynthesis III (tRNA-dependent) | 4 | 1 | 1 |
| L-citrulline biosynthesis | 8 | 7 | 1 |
| superpathway of L-citrulline metabolism | 12 | 9 | 1 |