Experiment set13IT029 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -8.7 -2.9 histidinol-phosphate transaminase compare
BWI76_RS11855 -8.7 -4.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS00805 -8.3 -3.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS20965 -8.1 -2.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS18940 -8.0 -3.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS11965 -7.6 -2.9 orotidine-5'-phosphate decarboxylase compare
BWI76_RS02995 -7.1 -4.2 aspartate carbamoyltransferase compare
BWI76_RS18955 -6.9 -2.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS03010 -6.9 -4.8 ornithine carbamoyltransferase compare
BWI76_RS20355 -6.9 -2.3 colicin V production protein compare
BWI76_RS11860 -6.8 -7.1 anthranilate synthase component I compare
BWI76_RS04465 -6.6 -3.0 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04245 -6.5 -9.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS01615 -6.5 -4.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS00980 -6.3 -8.6 PLP-dependent threonine dehydratase compare
BWI76_RS23220 -6.0 -4.8 amino-acid N-acetyltransferase compare
BWI76_RS21115 -5.9 -2.0 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS01610 -5.9 -4.3 phosphoribosylamine--glycine ligase compare
BWI76_RS18920 -5.8 -2.2 ATP phosphoribosyltransferase compare
BWI76_RS20970 -5.8 -1.1 phosphoribosylglycinamide formyltransferase compare
BWI76_RS10950 -5.8 -1.9 MFS transporter compare
BWI76_RS04670 -5.8 -6.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS00845 -5.8 -7.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS11840 -5.6 -1.7 tryptophan synthase subunit alpha compare
BWI76_RS01095 -5.6 -1.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS00850 -5.5 -8.0 acetylglutamate kinase compare
BWI76_RS17975 -5.4 -2.5 tail-specific protease compare
BWI76_RS26460 -5.4 -2.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS21660 -5.4 -1.0 antirestriction protein compare
BWI76_RS00855 -5.4 -8.1 argininosuccinate lyase compare
BWI76_RS08385 -5.4 -1.7 citrate (Si)-synthase compare
BWI76_RS00990 -5.4 -5.5 ketol-acid reductoisomerase compare
BWI76_RS00785 -5.4 -3.3 cystathionine gamma-synthase compare
BWI76_RS00835 -5.2 -12.4 phosphoenolpyruvate carboxylase compare
BWI76_RS04255 -5.2 -5.0 threonine synthase compare
BWI76_RS16965 -5.0 -1.4 murein lipoprotein compare
BWI76_RS18935 -5.0 -3.7 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS17190 -5.0 -1.6 TonB system transport protein TonB compare
BWI76_RS24285 -4.9 -4.9 cystathionine beta-lyase compare
BWI76_RS21165 -4.9 -0.9 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS00875 -4.9 -2.9 DNA-binding transcriptional regulator FabR compare
BWI76_RS02745 -4.9 -0.9 hypothetical protein compare
BWI76_RS22625 -4.9 -0.9 transcriptional regulator compare
BWI76_RS20350 -4.8 -3.9 amidophosphoribosyltransferase compare
BWI76_RS11255 -4.7 -1.5 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS19905 -4.7 -2.5 OmpK36 porin compare
BWI76_RS12070 -4.7 -0.9 hypothetical protein compare
BWI76_RS25645 -4.7 -3.2 shikimate dehydrogenase compare
BWI76_RS26455 -4.6 -1.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS04665 -4.6 -13.2 3-isopropylmalate dehydratase small subunit compare
BWI76_RS23265 -4.5 -1.2 hypothetical protein compare
BWI76_RS11440 -4.5 -0.9 hypothetical protein compare
BWI76_RS27385 -4.5 -7.0 orotate phosphoribosyltransferase compare
BWI76_RS09760 -4.5 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS15215 -4.4 -0.8 N-acetyltransferase compare
BWI76_RS01655 -4.4 -4.5 homoserine O-succinyltransferase compare
BWI76_RS00985 -4.4 -5.9 transcriptional regulator IlvY compare
BWI76_RS04680 -4.3 -10.0 2-isopropylmalate synthase compare
BWI76_RS21685 -4.3 -0.8 hypothetical protein compare
BWI76_RS04685 -4.3 -8.2 putative leucine operon leader peptide compare
BWI76_RS04470 -4.3 -8.7 carbamoyl phosphate synthase large subunit compare
BWI76_RS19840 -4.3 -0.8 hypothetical protein compare
BWI76_RS21475 -4.3 -2.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS00975 -4.3 -7.1 dihydroxy-acid dehydratase compare
BWI76_RS09615 -4.3 -1.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS22755 -4.3 -2.4 phosphoadenosine phosphosulfate reductase compare
BWI76_RS08605 -4.2 -1.4 phosphoglyceromutase compare
BWI76_RS11900 -4.2 -0.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS04250 -4.2 -4.0 homoserine kinase compare
BWI76_RS11850 -4.2 -6.3 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS14835 -4.2 -1.1 hypothetical protein compare
BWI76_RS10745 -4.2 -0.8 hypothetical protein compare
BWI76_RS12495 -4.1 -0.8 2-Cys peroxiredoxin compare
BWI76_RS08525 -4.1 -1.3 colicin transporter compare
BWI76_RS23365 -4.1 -2.5 LysR family transcriptional regulator compare
BWI76_RS05260 -4.1 -0.8 chaperone compare
BWI76_RS21465 -4.1 -3.9 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS04675 -4.0 -4.1 3-isopropylmalate dehydrogenase compare
BWI76_RS05840 -4.0 -2.0 glutamate 5-kinase compare
BWI76_RS05015 -3.9 -1.5 transcriptional regulator compare
BWI76_RS15350 -3.9 -0.7 hypothetical protein compare
BWI76_RS04160 -3.9 -2.0 phosphoserine phosphatase compare
BWI76_RS17675 -3.9 -1.3 hypothetical protein compare
BWI76_RS09335 -3.8 -0.7 baseplate assembly protein W compare
BWI76_RS04955 -3.8 -1.0 hypoxanthine phosphoribosyltransferase compare
BWI76_RS09910 -3.8 -10.5 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS14980 -3.8 -1.0 hypothetical protein compare
BWI76_RS07740 -3.8 -1.0 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS16195 -3.7 -1.0 hypothetical protein compare
BWI76_RS22700 -3.7 -3.2 sulfate adenylyltransferase subunit 2 compare
BWI76_RS16895 -3.6 -1.0 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS09645 -3.6 -0.7 thioredoxin-disulfide reductase compare
BWI76_RS07065 -3.6 -5.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS08535 -3.6 -1.2 translocation protein TolB compare
BWI76_RS21265 -3.6 -6.1 phosphoribosylformylglycinamidine synthase compare
BWI76_RS26440 -3.6 -0.7 hypothetical protein compare
BWI76_RS14320 -3.6 -1.5 hypothetical protein compare
BWI76_RS15035 -3.6 -0.9 metal ABC transporter permease compare
BWI76_RS07070 -3.5 -2.4 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS26665 -3.5 -2.5 DNA-binding response regulator compare
BWI76_RS20895 -3.5 -3.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS21690 -3.5 -0.9 hypothetical protein compare
BWI76_RS20750 -3.5 -0.7 carboxysome structural protein EutK compare
BWI76_RS21565 -3.5 -0.7 outer membrane protein assembly factor BamE compare
BWI76_RS00965 -3.5 -0.7 acetolactate synthase 2 small subunit compare
BWI76_RS21070 -3.4 -1.1 outer membrane protein assembly factor BamB compare
BWI76_RS18925 -3.4 -4.0 histidinol dehydrogenase compare
BWI76_RS04645 -3.4 -2.0 3-dehydroquinase compare
BWI76_RS17945 -3.4 -0.9 hypothetical protein compare
BWI76_RS18950 -3.4 -2.9 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS22760 -3.4 -5.1 sulfite reductase subunit beta compare
BWI76_RS11635 -3.4 -0.9 ABC transporter compare
BWI76_RS04240 -3.4 -1.8 thr operon leader peptide compare
BWI76_RS27390 -3.3 -4.1 ribonuclease PH compare
BWI76_RS08530 -3.3 -0.9 protein TolA compare
BWI76_RS25335 -3.3 -1.0 stringent starvation protein A compare
BWI76_RS21310 -3.2 -0.6 DNA repair protein RecO compare
BWI76_RS16955 -3.2 -0.6 hypothetical protein compare
BWI76_RS22765 -3.2 -7.9 sulfite reductase subunit alpha compare
BWI76_RS08380 -3.2 -0.8 endonuclease VIII compare
BWI76_RS00720 -3.2 -1.2 DNA-binding response regulator compare
BWI76_RS16425 -3.1 -2.7 hypothetical protein compare
BWI76_RS01125 -3.1 -3.2 4-alpha-L-fucosyltransferase compare
BWI76_RS25920 -3.1 -1.0 peptidylprolyl isomerase compare
BWI76_RS10640 -3.1 -2.5 AraC family transcriptional regulator compare
BWI76_RS05835 -3.1 -1.2 gamma-glutamyl-phosphate reductase compare
BWI76_RS26410 -3.1 -0.8 membrane protein compare
BWI76_RS19770 -3.1 -0.8 bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase compare
BWI76_RS08520 -3.1 -1.3 colicin transporter TolQ compare
BWI76_RS10990 -3.1 -2.0 dihydroorotase compare
BWI76_RS00390 -3.0 -4.1 two-component system sensor histidine kinase NtrB compare
BWI76_RS04705 -3.0 -3.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS07785 -3.0 -0.8 transcriptional regulator compare
BWI76_RS21810 -3.0 -0.8 universal stress protein compare
BWI76_RS23920 -2.9 -1.2 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS21450 -2.9 -1.1 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS10575 -2.9 -0.8 polar amino acid ABC transporter permease compare
BWI76_RS06535 -2.9 -1.5 endopeptidase La compare
BWI76_RS00355 -2.9 -0.9 DNA polymerase I compare
BWI76_RS13420 -2.9 -0.7 ABC transporter permease compare
BWI76_RS01220 -2.8 -4.8 DNA-dependent helicase II compare
BWI76_RS20360 -2.8 -0.5 cell division protein DedD compare
BWI76_RS26570 -2.8 -1.4 anion permease compare
BWI76_RS26390 -2.8 -4.7 cell division protein FtsX compare
BWI76_RS08390 -2.8 -2.7 hypothetical protein compare
BWI76_RS01350 -2.8 -0.5 NAD(P)H-flavin reductase compare
BWI76_RS16230 -2.7 -1.2 dihydromonapterin reductase compare
BWI76_RS26620 -2.7 -0.5 Fe-S biogenesis protein NfuA compare
BWI76_RS05120 -2.7 -5.1 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS14375 -2.7 -2.5 hypothetical protein compare
BWI76_RS11610 -2.7 -1.0 glutamate dehydrogenase compare
BWI76_RS01115 -2.7 -1.5 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS01195 -2.7 -0.7 membrane protein compare
BWI76_RS09970 -2.6 -0.7 porin OmpA compare
BWI76_RS21235 -2.6 -0.5 hypothetical protein compare
BWI76_RS15825 -2.6 -0.7 hypothetical protein compare
BWI76_RS23360 -2.6 -1.0 diaminopimelate decarboxylase compare
BWI76_RS00345 -2.6 -2.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS01800 -2.6 -1.3 glucose-6-phosphate isomerase compare
BWI76_RS11100 -2.6 -2.1 beta-ketoacyl-[acyl-carrier-protein] synthase II compare
BWI76_RS17980 -2.6 -3.3 RNA chaperone ProQ compare
BWI76_RS15835 -2.6 -1.9 hypothetical protein compare
BWI76_RS12090 -2.6 -2.1 HNH endonuclease compare
BWI76_RS11845 -2.5 -2.2 tryptophan synthase subunit beta compare
BWI76_RS09640 -2.5 -1.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS26290 -2.5 -2.2 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BWI76_RS25115 -2.5 -3.0 argininosuccinate synthase compare
BWI76_RS15360 -2.5 -1.9 hypothetical protein compare
BWI76_RS00970 -2.4 -2.6 branched chain amino acid aminotransferase compare
BWI76_RS18070 -2.4 -2.4 DNA polymerase III subunit epsilon compare
BWI76_RS12155 -2.4 -1.8 hypothetical protein compare
BWI76_RS07465 -2.4 -0.6 TetR family transcriptional regulator compare
BWI76_RS08210 -2.4 -0.6 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS16235 -2.4 -1.9 membrane protein compare
BWI76_RS24740 -2.4 -1.9 GntR family transcriptional regulator compare
BWI76_RS26055 -2.4 -4.7 siroheme synthase compare
BWI76_RS24580 -2.3 -4.1 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS22690 -2.3 -1.0 adenylyl-sulfate kinase compare
BWI76_RS26000 -2.3 -3.0 aspartate aminotransferase family protein compare
BWI76_RS22635 -2.3 -2.1 MFS transporter compare
BWI76_RS01385 -2.3 -1.0 potassium transporter compare
BWI76_RS13050 -2.3 -1.4 transcriptional regulator compare
BWI76_RS17860 -2.2 -0.9 YoaH family protein compare
BWI76_RS13820 -2.2 -0.9 hypothetical protein compare
BWI76_RS24400 -2.2 -1.5 outer membrane channel protein TolC compare
BWI76_RS04270 -2.2 -2.5 transaldolase compare
BWI76_RS09825 -2.2 -3.6 envelope biogenesis factor ElyC compare
BWI76_RS05450 -2.2 -0.5 ribonuclease HI compare
BWI76_RS17775 -2.2 -1.5 hypothetical protein compare
BWI76_RS25925 -2.2 -2.1 hypothetical protein compare
BWI76_RS18470 -2.2 -2.2 hypothetical protein compare
BWI76_RS01210 -2.2 -0.7 tyrosine recombinase XerC compare
BWI76_RS05785 -2.1 -2.0 CI repressor compare
BWI76_RS25315 -2.1 -6.7 glutamate synthase large subunit compare
BWI76_RS24900 -2.1 -0.8 DeoR family transcriptional regulator compare
BWI76_RS09870 -2.1 -2.6 aromatic amino acid aminotransferase compare
BWI76_RS12040 -2.1 -1.0 hypothetical protein compare
BWI76_RS23885 -2.1 -0.6 2-octaprenylphenol hydroxylase compare
BWI76_RS00385 -2.1 -4.8 nitrogen assimilation regulatory protein compare
BWI76_RS23250 -2.1 -1.1 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in mixed community experiments

For mixed community Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella across organisms