Experiment set13IT019 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Carbon source Sodium D,L-Lactate 10 mM

200 most detrimental genes:

  gene name fitness t score description  
AO356_28300 +1.4 2.2 hypothetical protein compare
AO356_26455 +1.2 2.0 hypothetical protein compare
AO356_01840 +1.1 1.9 uracil permease compare
AO356_12640 +1.1 2.5 cytochrome C compare
AO356_01115 +1.0 1.7 hypothetical protein compare
AO356_23980 +1.0 2.9 HIT family hydrolase compare
AO356_19835 +1.0 1.9 histidine kinase compare
AO356_21765 +1.0 1.5 GntR family transcriptional regulator compare
AO356_13485 +1.0 3.0 chemotaxis protein CheY compare
AO356_07385 +1.0 1.4 tRNA-Thr compare
AO356_29515 +0.9 1.6 energy transducer TonB compare
AO356_24755 +0.9 1.5 type II secretion system protein GspH compare
AO356_24555 +0.9 1.6 hypothetical protein compare
AO356_24730 +0.9 3.1 hypothetical protein compare
AO356_05080 +0.9 1.5 peptide deformylase compare
AO356_22935 +0.8 2.9 hypothetical protein compare
AO356_22995 +0.8 2.9 ArsR family transcriptional regulator compare
AO356_23075 +0.8 2.5 hypothetical protein compare
AO356_11340 +0.8 1.2 NADH-flavin reductase compare
AO356_02360 +0.8 2.7 multifunctional fatty acid oxidation complex subunit alpha compare
AO356_10170 +0.7 1.9 chemotaxis protein CheY compare
AO356_29795 +0.7 1.5 amino acid transporter compare
AO356_19935 +0.7 1.2 pilus assembly protein PilA compare
AO356_19425 +0.7 0.8 lipid A biosynthesis lauroyl acyltransferase compare
AO356_26330 +0.7 1.9 Lipid A biosynthesis, N-terminal compare
AO356_14920 +0.7 1.5 hypothetical protein compare
AO356_19810 +0.7 1.9 esterase compare
AO356_28245 +0.7 2.6 alpha/beta hydrolase compare
AO356_22675 +0.7 1.0 sulfate transporter compare
AO356_29695 +0.7 2.0 polysaccharide deacetylase compare
AO356_26845 +0.7 2.1 hypothetical protein compare
AO356_01695 +0.7 1.7 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_24565 +0.7 2.1 hypothetical protein compare
AO356_05655 +0.6 2.7 hypothetical protein compare
AO356_22760 +0.6 2.5 alpha-ketoglutarate-dependent dioxygenase compare
AO356_10145 +0.6 1.0 molecular chaperone Hsp33 compare
AO356_26745 +0.6 2.7 acetylornithine deacetylase compare
AO356_03730 +0.6 4.9 flagellar biosynthesis sigma factor compare
AO356_21790 +0.6 0.9 sulfonate ABC transporter ATP-binding protein compare
AO356_14360 +0.6 2.6 mannose-1-phosphate guanylyltransferase compare
AO356_29100 +0.6 1.5 epimerase compare
AO356_16395 +0.6 1.8 chemotaxis protein compare
AO356_30350 +0.6 3.2 LysR family transcriptional regulator compare
AO356_04055 +0.6 1.0 hypothetical protein compare
AO356_26720 +0.6 2.6 hydroxyacid dehydrogenase compare
AO356_12625 +0.6 1.9 cytochrome C2 compare
AO356_18900 +0.6 3.6 flagellar biosynthesis protein FlgA compare
AO356_25245 +0.6 1.5 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO356_18410 +0.6 1.3 phosphoesterase compare
AO356_03915 +0.6 3.0 flagellar biosynthesis protein FlgI compare
AO356_01940 +0.6 0.6 hypothetical protein compare
AO356_14105 +0.6 1.6 glycine cleavage system protein R compare
AO356_04345 +0.6 1.9 hypothetical protein compare
AO356_28640 +0.6 0.9 GntR family transcriptional regulator compare
AO356_17420 +0.6 1.7 ketosteroid isomerase compare
AO356_20260 +0.6 1.8 termination factor Rho compare
AO356_01925 +0.5 2.9 hypothetical protein compare
AO356_13445 +0.5 0.7 dihydroorotase compare
AO356_27600 +0.5 2.1 RND transporter MFP subunit compare
AO356_18755 +0.5 3.3 succinylglutamate desuccinylase compare
AO356_05345 +0.5 2.1 hypothetical protein compare
AO356_18480 +0.5 1.1 translation initiation factor 2 compare
AO356_01170 +0.5 1.6 glycosyl transferase family 1 compare
AO356_28645 +0.5 1.1 AraC family transcriptional regulator compare
AO356_11345 +0.5 1.9 4,5-dioxygenase compare
AO356_24815 +0.5 2.8 diguanylate cyclase compare
AO356_15690 +0.5 1.7 carbon starvation protein A compare
AO356_18920 +0.5 3.6 flagellar basal-body rod protein FlgC compare
AO356_01865 +0.5 2.4 tyrosine protein phosphatase compare
AO356_04550 +0.5 1.3 response regulator SirA compare
AO356_02735 +0.5 1.1 type III secretion regulator InvE compare
AO356_24550 +0.5 0.8 hypothetical protein compare
AO356_24525 +0.5 2.1 arsenic transporter compare
AO356_23455 +0.5 2.4 diguanylate cyclase compare
AO356_20850 +0.5 2.4 hypothetical protein compare
AO356_22955 +0.5 1.8 ArsR family transcriptional regulator compare
AO356_07660 +0.5 2.2 hypothetical protein compare
AO356_04180 +0.5 1.1 hypothetical protein compare
AO356_26395 +0.5 0.9 hypothetical protein compare
AO356_22975 +0.5 2.9 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
AO356_16615 +0.5 1.8 hypothetical protein compare
AO356_19565 +0.5 1.2 hypothetical protein compare
AO356_21240 +0.5 2.3 diaminopimelate epimerase compare
AO356_27290 +0.5 1.4 cytochrome B compare
AO356_19595 +0.5 1.5 urea transporter compare
AO356_19240 +0.5 0.8 cupin compare
AO356_30375 +0.5 1.4 hypothetical protein compare
AO356_29175 +0.5 2.0 chemotaxis protein compare
AO356_12610 +0.5 1.5 Fe-S oxidoreductase compare
AO356_03835 +0.5 3.3 flagellar M-ring protein FliF compare
AO356_23540 +0.5 2.1 GntR family transcriptional regulator compare
AO356_03815 +0.5 3.3 flagellar biogenesis protein compare
AO356_28575 +0.5 1.8 ABC transporter permease compare
AO356_22435 +0.5 2.4 decarboxylase compare
AO356_25555 +0.5 1.3 transcriptional regulator compare
AO356_22960 +0.5 2.4 AraC family transcriptional regulator compare
AO356_05035 +0.5 1.2 GNAT family acetyltransferase compare
AO356_15520 +0.5 0.9 AsnC family transcriptional regulator compare
AO356_08380 +0.5 1.4 acetyltransferase compare
AO356_09290 +0.5 2.3 LysR family transcriptional regulator compare
AO356_21280 +0.5 2.3 transcriptional regulator compare
AO356_25255 +0.5 1.8 FTR1 family iron permease compare
AO356_26485 +0.5 1.0 hypothetical protein compare
AO356_17255 +0.5 1.4 multidrug transporter compare
AO356_29490 +0.5 1.3 ArsR family transcriptional regulator compare
AO356_24405 +0.5 2.1 tRNA hydroxylase compare
AO356_21310 +0.5 0.8 filamentous hemagglutinin compare
AO356_25220 +0.5 1.2 nitrate reductase compare
AO356_27330 +0.5 1.9 transketolase compare
AO356_23545 +0.5 2.2 ABC transporter compare
AO356_24685 +0.5 2.2 2-dehydro-3-deoxygluconokinase compare
AO356_18930 +0.5 3.7 flagellar biosynthesis protein FlgE compare
AO356_07625 +0.5 1.0 RNA polymerase subunit sigma compare
AO356_04905 +0.5 1.2 3-oxoadipate enol-lactonase compare
AO356_20480 +0.5 1.5 hypothetical protein compare
AO356_18915 +0.5 2.4 flagellar biosynthesis protein FlgB compare
AO356_10480 +0.5 2.0 phage tail protein compare
AO356_26635 +0.5 1.2 hydrolase compare
AO356_09490 +0.5 1.2 poly(3-hydroxyalkanoate) granule-associated protein PhaF compare
AO356_22325 +0.5 1.5 reactive intermediate/imine deaminase compare
AO356_28285 +0.5 2.1 2-polyprenyl-6-methoxyphenol hydroxylase compare
AO356_29355 +0.5 0.8 hypothetical protein compare
AO356_08985 +0.5 0.6 hypothetical protein compare
AO356_08145 +0.5 2.2 hypothetical protein compare
AO356_23400 +0.5 1.4 phosphonate ABC transporter compare
AO356_26705 +0.5 2.0 AsnC family transcriptional regulator compare
AO356_18360 +0.4 2.7 electron transporter RnfD compare
AO356_25935 +0.4 2.0 polysaccharide deacetylase compare
AO356_29965 +0.4 1.8 2-polyprenyl-6-methoxyphenol hydroxylase compare
AO356_00790 +0.4 1.5 epimerase compare
AO356_04785 +0.4 2.0 methyltransferase compare
AO356_04355 +0.4 1.0 MFS transporter compare
AO356_27280 +0.4 1.0 XRE family transcriptional regulator compare
AO356_24350 +0.4 2.1 type VI secretion protein compare
AO356_19600 +0.4 2.4 pyruvate kinase compare
AO356_03770 +0.4 1.9 flagellar biosynthesis protein flip compare
AO356_26890 +0.4 2.0 MFS transporter compare
AO356_11735 +0.4 1.7 XRE family transcriptional regulator compare
AO356_02855 +0.4 2.0 GCN5 family acetyltransferase compare
AO356_10485 +0.4 1.3 hypothetical protein compare
AO356_29415 +0.4 1.7 transketolase compare
AO356_01275 +0.4 2.1 GntR family transcriptional regulator compare
AO356_03780 +0.4 0.8 flagellar motor switch protein compare
AO356_28740 +0.4 1.2 oxidoreductase compare
AO356_25310 +0.4 0.7 hypothetical protein compare
AO356_03760 +0.4 2.5 flagellar biosynthetic protein FliR compare
AO356_08020 +0.4 1.8 2OG-Fe(II) oxygenase compare
AO356_05090 +0.4 0.9 hypothetical protein compare
AO356_21200 +0.4 0.8 quercetin 2,3-dioxygenase compare
AO356_23395 +0.4 1.2 ABC transporter permease compare
AO356_18925 +0.4 2.9 flagellar biosynthesis protein FlgD compare
AO356_03880 +0.4 2.2 flagellin compare
AO356_06580 +0.4 1.0 GTP-binding protein compare
AO356_26740 +0.4 1.1 succinate-semialdehyde dehydrogenase compare
AO356_03855 +0.4 3.3 AAA family ATPase compare
AO356_04910 +0.4 2.3 3-carboxy-cis,cis-muconate cycloisomerase compare
AO356_16570 +0.4 1.6 hypoxanthine-guanine phosphoribosyltransferase compare
AO356_00420 +0.4 1.3 3-hydroxybutyrate dehydrogenase compare
AO356_18540 +0.4 2.0 MFS transporter compare
AO356_25485 +0.4 1.4 aldehyde dehydrogenase compare
AO356_05170 +0.4 2.0 aldose epimerase compare
AO356_07545 +0.4 3.3 transcriptional regulator PdhR compare
AO356_05785 +0.4 0.8 phage tail protein compare
AO356_00980 +0.4 1.7 DNA damage resistance protein (from data) compare
AO356_21985 +0.4 1.7 hypothetical protein compare
AO356_07380 +0.4 2.6 hypothetical protein compare
AO356_01015 +0.4 1.1 peptidylprolyl isomerase compare
AO356_26165 +0.4 1.1 LysR family transcriptional regulator compare
AO356_13580 +0.4 2.8 cytochrome B compare
AO356_27475 +0.4 2.2 shikimate dehydrogenase compare
AO356_27945 +0.4 1.7 glycosyl hydrolase compare
AO356_24215 +0.4 1.6 chemotaxis protein CheC compare
AO356_26940 +0.4 1.7 dehydrogenase compare
AO356_10525 +0.4 2.2 cell division protein compare
AO356_27845 +0.4 1.0 hydrolase compare
AO356_25720 +0.4 0.8 polyamine ABC transporter permease compare
AO356_08535 +0.4 1.7 LOG family protein compare
AO356_09565 +0.4 2.5 glucan biosynthesis protein G compare
AO356_27795 +0.4 1.8 hypothetical protein compare
AO356_00965 +0.4 2.1 sugar ABC transporter ATP-binding protein compare
AO356_26895 +0.4 0.8 2Fe-2S ferredoxin compare
AO356_00930 +0.4 1.6 hypothetical protein compare
AO356_29590 +0.4 0.7 ester cyclase compare
AO356_21430 +0.4 3.1 peptidoglycan-binding protein compare
AO356_03925 +0.4 2.1 flagellar basal-body rod protein FlgG compare
AO356_25520 +0.4 1.6 3-oxoacyl-ACP reductase compare
AO356_01625 +0.4 1.2 RNA polymerase subunit sigma-24 compare
AO356_23405 +0.4 2.3 phosphonate ABC transporter substrate-binding protein compare
AO356_03930 +0.4 1.5 flagellar biosynthesis protein FlgF compare
AO356_04095 +0.4 1.7 agmatinase compare
AO356_24690 +0.4 2.1 AP endonuclease compare
AO356_25360 +0.4 0.9 dimethylmenaquinone methyltransferase compare
AO356_03495 +0.4 1.3 phosphoglycolate phosphatase compare
AO356_26180 +0.4 1.5 hypothetical protein compare
AO356_21020 +0.4 1.5 hypothetical protein compare
AO356_22165 +0.4 2.1 leucyl/phenylalanyl-tRNA--protein transferase compare
AO356_16730 +0.4 1.8 cell division protein DedD compare
AO356_25250 +0.4 1.6 hypothetical protein compare
AO356_29835 +0.4 0.7 LuxR family transcriptional regulator compare
AO356_03910 +0.4 2.4 flagellar biosynthesis protein FlgJ compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium D,L-Lactate in Pseudomonas fluorescens FW300-N2C3

For carbon source Sodium D,L-Lactate across organisms