Experiment set13IT018 for Desulfovibrio vulgaris Hildenborough JW710

Compare to:

MoLS4 with Formamide 20mM nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
DVU3392 glnA +1.3 8.3 glutamine synthetase, type I (TIGR) compare
DVU0509 +1.2 1.2 conserved hypothetical protein (TIGR) compare
DVU1033 cinA +1.2 1.1 competence/damage-inducible protein CinA protein, truncation (TIGR) compare
DVU0642 +1.1 5.2 hydrolase, alpha/beta fold family (TIGR) compare
DVU0671 +1.1 6.8 conserved hypothetical protein (TIGR) compare
DVU0077 +1.1 6.3 conserved hypothetical protein (TIGR) compare
DVU2915 +1.1 3.9 hypothetical protein (TIGR) compare
DVU1726 +1.1 2.5 hypothetical protein (TIGR) compare
DVU0451 +1.0 8.0 chloride channel family protein (TIGR) compare
DVU0420 +0.9 1.2 hypothetical protein (TIGR) compare
DVU1908 pdxJ +0.9 0.8 pyridoxal phosphate biosynthetic protein PdxJ (TIGR) compare
DVU1351 +0.9 1.8 membrane protein, MarC family (TIGR) compare
DVU1251 +0.8 5.5 hypothetical protein (TIGR) compare
DVU2669 +0.8 2.5 conserved domain protein (TIGR) compare
DVU0384 flr +0.8 3.2 flavoredoxin (TIGR) compare
DVU0899 +0.8 1.5 conserved hypothetical protein (TIGR) compare
DVU0008 +0.8 0.6 hypothetical protein (TIGR) compare
DVU1436 +0.7 0.7 hypothetical protein (TIGR) compare
DVU0074 +0.7 3.4 polysaccharide biosynthesis domain protein (TIGR) compare
DVU2578 +0.7 4.5 response regulator (TIGR) compare
DVU2577 +0.7 4.5 DNA-binding response regulator, LuxR family (TIGR) compare
DVU2269 +0.7 2.0 hypothetical protein (TIGR) compare
DVU0392 +0.7 4.7 aromatic aminotransferase (TIGR) compare
DVU2539 +0.6 0.7 hypothetical protein (TIGR) compare
DVU1210 +0.6 0.3 conserved hypothetical protein (TIGR) compare
DVU2328 hypA +0.6 1.1 hydrogenase nickel insertion protein HypA, putative (TIGR) compare
DVU2512 mraW +0.6 1.4 S-adenosyl-methyltransferase MraW (TIGR) compare
DVU1375 +0.6 3.7 hypothetical protein (TIGR) compare
DVU1491 +0.6 1.0 conserved hypothetical protein (TIGR) compare
DVU1446 +0.6 4.2 heptosyltransferase family protein (TIGR) compare
DVUA0071 +0.6 1.2 glycosyl transferase, group 1/2 family protein (TIGR) compare
DORF26459 +0.6 3.4 no description compare
DVU3277 +0.6 0.6 hypothetical protein (TIGR) compare
DVU1409 +0.6 3.5 hypothetical protein (TIGR) compare
DVU1225 +0.6 0.9 hypothetical protein (TIGR) compare
DVU1621 +0.6 1.9 hypothetical protein (TIGR) compare
DVU0616 +0.6 1.4 hypothetical protein (TIGR) compare
DVU2473 +0.6 0.4 hypothetical protein (TIGR) compare
DVU0522 yviF +0.6 3.7 conserved hypothetical protein (TIGR) compare
DVU0669 +0.6 1.6 hypothetical protein (TIGR) compare
DVUA0081 +0.6 1.0 glycosyl transferase, group 1/2 family protein (TIGR) compare
DVU1762 +0.6 1.6 membrane protein, putative (TIGR) compare
DVU2591 +0.5 2.2 tail fiber assembly protein, putative (TIGR) compare
DVU0909 +0.5 3.2 hypothetical protein (TIGR) compare
DVU1842 +0.5 0.9 lipoprotein, putative (TIGR) compare
DVU0376 +0.5 1.1 hypothetical protein (TIGR) compare
DVU0302 +0.5 2.5 chemotaxis protein CheX, putative (TIGR) compare
DVU0308 +0.5 0.8 membrane protein, putative (TIGR) compare
DVU1268 +0.5 1.9 hypothetical protein (TIGR) compare
DVU0045 +0.5 3.8 flagellar biosynthesis protein, FliO, putative (TIGR) compare
DVU3177 +0.5 1.8 hypothetical protein (TIGR) compare
DORF12467 +0.5 1.1 SEED: protein of unknown function DUF497 compare
DVU2556 +0.5 1.7 hypothetical protein (TIGR) compare
DVU2972 +0.5 2.5 chemotaxis protein CheD, putative (TIGR) compare
DVU1950 +0.5 2.8 indolepyruvate ferredoxin oxidoreductase, beta subunit, putative (TIGR) compare
DVU1185 +0.5 1.4 colicin V production family protein (TIGR) compare
DORF8192 +0.5 1.5 SEED: FIG00606834: hypothetical protein compare
DVU1943 +0.5 1.5 hypothetical protein (TIGR) compare
DVU0046 fliN +0.5 2.6 flagellar motor switch protein FliN (TIGR) compare
DORF43335 +0.5 0.6 no description compare
DVU2774 +0.5 2.2 CBS domain protein/ACT domain protein (TIGR) compare
DVU2894 flrA +0.5 2.3 sigma-54 dependent transcriptional regulator (TIGR) compare
DVU1499 +0.5 1.8 hypothetical protein (TIGR) compare
DVU2910 +0.5 2.2 membrane protein, putative (TIGR) compare
DVU0902 +0.5 2.0 TPR domain protein (TIGR) compare
DVU2470 b0786 +0.5 2.3 membrane protein, putaive (TIGR) compare
DVU1162 +0.5 1.0 hypothetical protein (TIGR) compare
DVU3287 +0.5 3.6 glycosyl transferase, group 2 family protein (TIGR) compare
DVU2417 +0.5 1.4 SlyX protein (TIGR) compare
DVU2677 +0.5 3.6 sensor histidine kinase/response regulator (TIGR) compare
DVU1798 +0.5 1.7 conserved hypothetical protein (TIGR) compare
DVU0690 +0.5 2.3 conserved hypothetical protein (TIGR) compare
DORF35977 +0.5 2.8 no description compare
DVU1464 +0.5 3.8 heptosyltransferase family protein (TIGR) compare
DVU2023 +0.5 2.0 hypothetical protein (TIGR) compare
DVU1581 +0.5 2.3 hypothetical protein (TIGR) compare
DVU1577 hslV +0.5 1.5 ATP-dependent protease hslV (TIGR) compare
DVU2957 +0.5 0.2 hypothetical protein (TIGR) compare
DVU1643 +0.5 1.8 conserved hypothetical protein, degenerate (TIGR) compare
DVU0382 +0.5 1.6 hypothetical protein (TIGR) compare
DVU0912 +0.5 1.8 conserved domain protein (TIGR) compare
DORF10286 +0.5 1.6 no description compare
DVU2861 +0.5 0.9 hypothetical protein (TIGR) compare
DVU2867 +0.4 0.8 holin (TIGR) compare
DVUA0029 +0.4 1.6 hypothetical protein (TIGR) compare
DVU1448 +0.4 2.7 conserved hypothetical protein (TIGR) compare
DVU1748 +0.4 0.4 conserved hypothetical protein (TIGR) compare
DVU1825 +0.4 3.5 amidohydrolase family protein (TIGR) compare
DVU2362 thiE-2 +0.4 1.1 thiamine-phosphate pyrophosphorylase (TIGR) compare
DVU0485 +0.4 2.7 membrane protein, putative (TIGR) compare
DVU2752 +0.4 1.8 rhodanese-like domain protein (TIGR) compare
DVU1489 +0.4 1.6 hypothetical protein (TIGR) compare
DVU0043 fliQ +0.4 2.9 flagellar biosynthetic protein FliQ (TIGR) compare
DVU0512 flgF +0.4 2.3 flagellar basal-body rod protein, putative (TIGR) compare
DVU1475 +0.4 1.2 PhoU family protein (TIGR) compare
DVU1951 +0.4 2.1 indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative (TIGR) compare
DVU2987 +0.4 2.5 hypothetical protein (TIGR) compare
DVU1363 rfbD +0.4 2.4 dTDP-4-dehydrorhamnose reductase (TIGR) compare
DVU0318 +0.4 1.7 TPR domain protein (TIGR) compare
DVU0257 +0.4 0.7 acetyltransferase, GNAT family (TIGR) compare
DVU3233 flhB +0.4 3.0 flagellar biosynthetic protein FlhB (TIGR) compare
DVU2331 +0.4 2.2 Smr family protein (TIGR) compare
DVU1471 hspC +0.4 1.5 heat shock protein, Hsp20 family (TIGR) compare
DVU1589 +0.4 1.6 hypothetical protein (TIGR) compare
DVU2121 +0.4 2.3 response regulator (TIGR) compare
DVU1760 +0.4 1.3 transcriptional regulator, TetR family (TIGR) compare
DVUA0092 +0.4 1.7 hypothetical protein (TIGR) compare
DVU2864 +0.4 1.0 hypothetical protein (TIGR) compare
DVU0910 fliM +0.4 2.4 flagellar motor switch protein FliM (TIGR) compare
DVU2544 +0.4 2.7 iron-sulfur cluster-binding protein (TIGR) compare
DVU1900 +0.4 2.2 conserved hypothetical protein (TIGR) compare
DVU1878 ltaE +0.4 2.6 threonine aldolase, low-specificity (TIGR) compare
DVU1962 +0.4 2.8 methyl-accepting chemotaxis protein (TIGR) compare
DVU0822 +0.4 1.0 hypothetical protein (TIGR) compare
DVU0416 +0.4 2.4 GGDEF domain protein (TIGR) compare
DVU1518 +0.4 0.8 transcriptional regulator cI, truncation (TIGR) compare
DVU1093 +0.4 1.1 HAD-superfamily hydrolase, subfamily IA, variant 3 (TIGR) compare
DVU0480 +0.4 2.1 hypothetical protein (TIGR) compare
DVU0545 +0.4 1.7 conserved hypothetical protein (TIGR) compare
DVU2600 +0.4 1.6 hypothetical protein (TIGR) compare
DVU2697 +0.4 1.6 hypothetical protein (TIGR) compare
DVU1595 cheR-1 +0.4 2.3 chemotaxis protein methyltransferase (TIGR) compare
DVU0713 livH +0.4 2.4 branched-chain amino acid ABC transporter, permease protein (TIGR) compare
DVU1960 cheA-2 +0.4 2.9 chemotaxis protein CheA (TIGR) compare
DVU2300 +0.4 0.4 hypothetical protein (TIGR) compare
DVU1192 acyP +0.4 1.3 acylphosphatase (TIGR) compare
DVU3225 +0.4 2.7 hypothetical protein (TIGR) compare
DVUA0150 +0.4 1.8 bacterial extracellular solute-binding protein, family 3 (TIGR) compare
DVU0293 +0.4 1.0 prokaryotic dksA/traR C4-type zinc finger family protein (TIGR) compare
DVU1023 +0.4 2.2 rhomboid family protein (TIGR) compare
DVUA0116 +0.4 1.5 conserved hypothetical protein (TIGR) compare
DVU2973 hup +0.4 1.3 integration host factor, beta subunit (TIGR) compare
DVU1360 galE +0.4 0.4 UDP-glucose 4-epimerase (TIGR) compare
DVU2721 +0.4 2.5 phage tail tape measure protein, TP901 family, putative (TIGR) compare
DVU3180 +0.4 3.0 GGDEF domain protein (TIGR) compare
DVU0280 wbaZ-2 +0.4 0.9 glycosyl transferase, group 1 family protein (TIGR) compare
DVU2009 +0.4 0.8 conserved domain protein (TIGR) compare
DVU0618 +0.4 0.4 hypothetical protein (TIGR) compare
DVU0359 +0.4 1.4 HesB-like domain (TIGR) compare
DVU1817 cyf +0.4 1.2 cytochrome c-553 (TIGR) compare
DVU1604 +0.4 1.6 hypothetical protein (TIGR) compare
DVU1862 +0.4 1.5 GGDEF domain protein (TIGR) compare
DVU1087 +0.4 1.6 conserved hypothetical protein (TIGR) compare
DVU2388 tolQ-1 +0.4 2.1 tolQ protein (TIGR) compare
DVU0215 +0.3 1.9 tail protein, putative (TIGR) compare
DVU2232 +0.3 1.3 hypothetical protein (TIGR) compare
DVU1252 +0.3 2.8 membrane protein, putative (TIGR) compare
DVU0315 flgC +0.3 2.2 flagellar basal-body rod protein FlgC (TIGR) compare
DVU0880 +0.3 1.9 hypothetical protein (TIGR) compare
DVU2516 +0.3 2.2 CBS domain protein (TIGR) compare
DVU0966 +0.3 2.7 amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) compare
DVU1816 +0.3 1.4 conserved hypothetical protein (TIGR) compare
DORF10446 +0.3 2.0 SEED: FIG00604570: hypothetical protein compare
DVU2228 +0.3 1.3 motB protein, putative (TIGR) compare
DORF24435 +0.3 0.8 SEED: Sll1863 protein compare
DVUA0101 flhB +0.3 2.2 type III secretion protein, hrpY/hrcU family (TIGR) compare
DVU2717 +0.3 1.4 hypothetical protein (TIGR) compare
DVU2627 +0.3 1.0 conserved domain protein (TIGR) compare
DVU0702 +0.3 1.5 cytochrome c family protein (TIGR) compare
DVU3234 +0.3 2.0 flagellar biosynthetic protein FliR (TIGR) compare
DVU1237 glnP +0.3 1.6 amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) compare
DVU1961 cheW-3 +0.3 0.9 chemotaxis protein CheW (TIGR) compare
DVU1652 hit +0.3 1.2 HIT family protein (TIGR) compare
DVU1722 +0.3 1.0 hypothetical protein (TIGR) compare
DVU1465 +0.3 2.5 CgeB family protein (TIGR) compare
DVU2046 +0.3 0.3 hypothetical protein (TIGR) compare
DVUA0053 +0.3 1.6 conserved hypothetical protein (TIGR) compare
DVU1088 +0.3 0.9 hypothetical protein (TIGR) compare
DVU2620 +0.3 2.3 conserved hypothetical protein (TIGR) compare
DVU1679 idi +0.3 0.8 isopentenyl-diphosphate delta-isomerase (TIGR) compare
DVU0495 +0.3 1.4 conserved hypothetical protein (TIGR) compare
DVU2342 +0.3 2.2 amino acid ABC transporter, periplasmic amino acid-binding protein (TIGR) compare
DVU1926 +0.3 1.1 conserved hypothetical protein (TIGR) compare
DORF19110 +0.3 2.0 SEED: FIG00607238: hypothetical protein compare
DORF46408 +0.3 0.8 no description compare
DVU1241 +0.3 0.9 conserved hypothetical protein (TIGR) compare
DVU2034 +0.3 0.9 hypothetical protein (TIGR) compare
DVU1843 +0.3 1.4 hypothetical protein (TIGR) compare
DVU0980 b1199 +0.3 1.7 DAK2 domain protein (TIGR) compare
DVU2024 +0.3 1.9 conserved hypothetical protein (TIGR) compare
DVU1447 +0.3 1.9 CgeB family protein (TIGR) compare
DVU3163 +0.3 1.6 ABC transporter, permease protein (TIGR) compare
DVU0915 +0.3 1.3 conserved hypothetical protein (TIGR) compare
DVU3232 flhA +0.3 2.7 flagellar biosynthetic protein FlhA (TIGR) compare
DORF19331 +0.3 1.2 no description compare
DVU2879 +0.3 1.8 conserved hypothetical protein (TIGR) compare
DVU0378 +0.3 1.2 thioredoxin, putative (TIGR) compare
DVU0311 +0.3 1.9 flagellar assembly protein FliH, putative (TIGR) compare
DVU1236 +0.3 1.4 amino acid ABC transporter, ATP-binding protein (TIGR) compare
DVU3076 +0.3 1.7 conserved hypothetical protein (TIGR) compare
DVU2646 +0.3 1.7 1-aminocyclopropane-1-carboxylate deaminase (TIGR) compare
DVU0698 rfbC +0.3 2.1 dTDP-4-dehydrorhamnose 3,5-epimerase (TIGR) compare
DVU3215 drrA +0.3 0.5 response regulator (TIGR) compare
DVU0411 +0.3 2.4 heptosyltransferase family protein (TIGR) compare
DVU2021 +0.3 1.0 hypothetical protein (TIGR) compare
DORF807 +0.3 1.2 no description compare
DVU1753 +0.3 1.1 hypothetical protein (TIGR) compare
DVU1873 ppiB-2 +0.3 1.1 peptidyl-prolyl cis-trans isomerase B (TIGR) compare
DVU0964 fragments +0.3 2.8 Glu/Leu/Phe/Val dehydrogenase family protein (TIGR) compare
DVU1458 +0.3 1.9 chemotaxis protein CheZ, putative (TIGR) compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source Formamide in Desulfovibrio vulgaris Hildenborough JW710

For nitrogen source Formamide across organisms