Experiment set13IT016 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Betaine (N); with MOPS; with Sodium chloride

200 most important genes:

  gene name fitness t score description  
PFLU_RS23590 -5.5 -3.7 gluconokinase compare
PFLU_RS27365 -5.2 -5.1 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS27895 -5.0 -8.3 membrane dipeptidase compare
PFLU_RS20575 -4.8 -5.7 3-isopropylmalate dehydratase small subunit compare
PFLU_RS28385 -4.7 -9.6 homoserine O-acetyltransferase compare
PFLU_RS04465 -4.7 -7.9 ATP phosphoribosyltransferase compare
PFLU_RS28390 -4.6 -7.8 methionine biosynthesis protein MetW compare
PFLU_RS28535 -4.6 -12.3 dihydroxy-acid dehydratase compare
PFLU_RS20565 -4.6 -9.3 3-isopropylmalate dehydrogenase compare
PFLU_RS02050 -4.6 -14.1 NAD(P)-binding protein compare
PFLU_RS27865 -4.6 -11.8 glycine-betaine demethylase subunit GbcA compare
PFLU_RS02590 -4.5 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS27820 -4.5 -9.2 sarcosine oxidase subunit beta compare
PFLU_RS02045 -4.5 -20.9 glutamate synthase large subunit compare
PFLU_RS27370 -4.5 -8.0 anthranilate phosphoribosyltransferase compare
PFLU_RS20580 -4.5 -9.0 3-isopropylmalate dehydratase large subunit compare
PFLU_RS25640 -4.4 -7.4 ketol-acid reductoisomerase compare
PFLU_RS07230 -4.4 -7.9 RNA polymerase sigma factor RpoE compare
PFLU_RS20540 -4.4 -5.2 phosphoribosylanthranilate isomerase compare
PFLU_RS24765 -4.3 -20.0 2-isopropylmalate synthase compare
PFLU_RS20510 -4.3 -11.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS27870 -4.3 -14.0 electron transfer flavoprotein subunit beta compare
PFLU_RS27815 -4.2 -5.8 sarcosine oxidase subunit delta compare
PFLU_RS27875 -4.2 -9.0 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS27890 -4.2 -7.6 hypothetical protein compare
PFLU_RS27885 -4.2 -11.1 dimethylglycine demethylation protein DgcA compare
PFLU_RS04470 -4.1 -7.9 histidinol dehydrogenase compare
PFLU_RS27810 -4.1 -16.5 sarcosine oxidase subunit alpha compare
PFLU_RS28645 -4.1 -16.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01690 -4.0 -7.7 nitrogen regulation protein NR(II) compare
PFLU_RS28165 -4.0 -9.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01685 -4.0 -2.7 nitrogen regulation protein NR(I) compare
PFLU_RS00180 -3.9 -3.8 tryptophan synthase subunit beta compare
PFLU_RS01900 -3.8 -4.5 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS27825 -3.8 -12.8 serine hydroxymethyltransferase compare
PFLU_RS25360 -3.8 -7.6 glutamate 5-kinase compare
PFLU_RS27805 -3.7 -3.6 sarcosine oxidase subunit gamma family protein compare
PFLU_RS12975 -3.7 -2.6 DUF934 domain-containing protein compare
PFLU_RS27860 -3.7 -8.9 glycine-betaine demethylase subunit GbcB compare
PFLU_RS00175 -3.7 -3.6 tryptophan synthase subunit alpha compare
PFLU_RS12980 -3.7 -7.4 nitrite/sulfite reductase compare
PFLU_RS27880 -3.6 -9.3 dimethylglycine demethylation protein DgcB compare
PFLU_RS06265 -3.6 -17.2 [protein-PII] uridylyltransferase compare
PFLU_RS01610 -3.6 -7.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS24025 -3.5 -12.3 quinolinate synthase NadA compare
PFLU_RS01620 -3.5 -4.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS18505 -3.4 -5.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25645 -3.4 -2.3 acetolactate synthase small subunit compare
PFLU_RS27975 -3.4 -6.2 choline ABC transporter ATP-binding protein compare
PFLU_RS01605 -3.3 -7.4 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS28415 -3.3 -8.9 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
PFLU_RS08505 -3.2 -8.9 protease HtpX compare
PFLU_RS03240 -3.2 -13.9 copper-translocating P-type ATPase compare
PFLU_RS27970 -3.1 -9.9 choline ABC transporter permease subunit compare
PFLU_RS28695 -3.1 -6.3 phosphoglycerate dehydrogenase compare
PFLU_RS23585 -3.1 -9.3 GntP family permease compare
PFLU_RS03970 -3.1 -11.3 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS28655 -3.1 -11.3 HAD family hydrolase compare
PFLU_RS25715 -3.1 -3.0 RNA polymerase-binding protein DksA compare
PFLU_RS22095 -3.0 -17.4 GTP diphosphokinase compare
PFLU_RS04635 -3.0 -6.9 BON domain-containing protein compare
PFLU_RS13010 -2.9 -3.9 Fe-S biogenesis protein NfuA compare
PFLU_RS03770 -2.9 -14.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS00415 -2.9 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29515 -2.9 -11.9 RidA family protein compare
PFLU_RS06055 -2.9 -3.2 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS22105 -2.9 -4.7 cysteine synthase CysM compare
PFLU_RS29875 -2.9 -14.4 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS20515 -2.8 -3.9 amidophosphoribosyltransferase compare
PFLU_RS02365 -2.8 -9.4 glycosyltransferase compare
PFLU_RS29885 -2.8 -11.4 LysR family transcriptional regulator compare
PFLU_RS22740 -2.8 -1.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS23310 -2.8 -10.0 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS01895 -2.7 -6.8 phosphoribosyl-ATP diphosphatase compare
PFLU_RS27955 -2.7 -8.3 GlxA family transcriptional regulator compare
PFLU_RS28965 -2.7 -10.4 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS29880 -2.6 -12.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS01625 -2.5 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS04065 -2.5 -9.6 ABC transporter permease compare
PFLU_RS06310 -2.5 -8.3 sigma E protease regulator RseP compare
PFLU_RS19165 -2.4 -3.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS03765 -2.4 -10.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS09055 -2.3 -2.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS19170 -2.3 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS07275 -2.3 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS29300 -2.3 -9.6 ammonium transporter compare
PFLU_RS07640 -2.2 -9.7 universal stress protein compare
PFLU_RS12175 -2.2 -2.1 methyl-accepting chemotaxis protein compare
PFLU_RS18530 -2.2 -3.2 DNA translocase FtsK compare
PFLU_RS04060 -2.2 -10.3 glycine betaine ABC transporter substrate-binding protein compare
PFLU_RS16780 -2.1 -14.0 glycine betaine/L-proline transporter ProP compare
PFLU_RS24205 -2.1 -2.7 DNA binding protein compare
PFLU_RS26250 -2.1 -12.9 ferredoxin--NADP reductase compare
PFLU_RS27640 -2.1 -1.7 alpha/beta fold hydrolase compare
PFLU_RS29750 -2.1 -5.4 phosphate signaling complex protein PhoU compare
PFLU_RS21495 -2.1 -1.4 TlpA family protein disulfide reductase compare
PFLU_RS24330 -2.0 -4.2 phosphogluconate dehydratase compare
PFLU_RS22520 -2.0 -3.0 GntR family transcriptional regulator compare
PFLU_RS27965 -2.0 -9.6 choline ABC transporter substrate-binding protein compare
PFLU_RS27650 -1.9 -7.9 biotin synthase BioB compare
PFLU_RS05020 -1.9 -1.9 DUF1120 domain-containing protein compare
PFLU_RS05965 -1.9 -0.9 hypothetical protein compare
PFLU_RS08410 -1.9 -6.6 HTH-type transcriptional regulator CysB compare
PFLU_RS11525 -1.9 -3.6 GntR family transcriptional regulator compare
PFLU_RS01660 -1.9 -3.0 rhodanese-like domain-containing protein compare
PFLU_RS04050 -1.8 -8.3 ABC transporter ATP-binding protein compare
PFLU_RS25740 -1.8 -5.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS10765 -1.8 -8.3 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS21995 -1.8 -3.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS24860 -1.8 -1.2 Fe-S cluster assembly transcriptional regulator IscR compare
PFLU_RS18395 -1.8 -2.2 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS07755 -1.8 -5.1 heavy metal sensor histidine kinase compare
PFLU_RS18410 -1.7 -4.7 response regulator compare
PFLU_RS04055 -1.7 -8.2 ABC transporter permease compare
PFLU_RS20660 -1.7 -9.0 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS25735 -1.7 -3.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS02775 -1.7 -1.3 urease accessory protein UreF compare
PFLU_RS02370 -1.7 -7.1 glycosyltransferase compare
PFLU_RS29480 -1.7 -7.8 exodeoxyribonuclease III compare
PFLU_RS01645 -1.7 -8.7 S41 family peptidase compare
PFLU_RS07225 -1.7 -10.9 L-aspartate oxidase compare
PFLU_RS13540 -1.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS03665 -1.7 -4.9 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS27475 -1.7 -2.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS29400 -1.6 -1.7 DUF1127 domain-containing protein compare
PFLU_RS04325 -1.6 -9.6 ribonuclease G compare
PFLU_RS05385 -1.5 -10.1 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS23240 -1.5 -7.4 magnesium transporter compare
PFLU_RS04075 -1.5 -1.6 hypothetical protein compare
PFLU_RS18585 -1.5 -1.6 high frequency lysogenization protein HflD compare
PFLU_RS29490 -1.5 -6.7 ribonuclease PH compare
PFLU_RS20955 -1.5 -2.4 DUF1028 domain-containing protein compare
PFLU_RS01615 -1.5 -3.4 DUF2164 domain-containing protein compare
PFLU_RS02970 -1.5 -5.5 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS03610 -1.5 -4.4 redox-regulated ATPase YchF compare
PFLU_RS05250 -1.4 -2.5 elongation factor 4 compare
PFLU_RS02625 -1.4 -8.8 ribonuclease R compare
PFLU_RS27375 -1.4 -3.9 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS11850 -1.4 -2.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS07910 -1.4 -1.7 type 1 fimbrial protein compare
PFLU_RS14805 -1.4 -2.3 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS19175 -1.4 -5.8 trigger factor compare
PFLU_RS02455 -1.4 -1.9 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS31290 -1.4 -1.4 EamA family transporter compare
PFLU_RS25750 -1.4 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS27380 -1.4 -7.0 anthranilate synthase component I compare
PFLU_RS22000 -1.3 -5.9 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS25800 -1.3 -2.2 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS25730 -1.3 -8.7 PAS domain S-box protein compare
PFLU_RS21665 -1.3 -4.5 MinD/ParA family protein compare
PFLU_RS18645 -1.3 -1.5 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS13000 -1.3 -8.9 methionine synthase compare
PFLU_RS13715 -1.3 -1.2 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS23725 -1.3 -5.4 glucose-6-phosphate dehydrogenase compare
PFLU_RS06395 -1.3 -6.3 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
PFLU_RS23920 -1.3 -1.9 septation protein A compare
PFLU_RS03575 -1.3 -1.8 hypothetical protein compare
PFLU_RS28820 -1.3 -2.2 aliphatic sulfonates ABC transporter ATP-binding protein compare
PFLU_RS02670 -1.2 -2.9 hypothetical protein compare
PFLU_RS04150 -1.2 -5.8 DUF1043 family protein compare
PFLU_RS07540 -1.2 -1.5 class II glutamine amidotransferase compare
PFLU_RS23305 -1.2 -6.7 arginine N-succinyltransferase compare
PFLU_RS28195 -1.2 -6.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS24695 -1.2 -1.5 PTS glucose transporter subunit IIB compare
PFLU_RS17850 -1.2 -3.2 hypothetical protein compare
PFLU_RS15410 -1.2 -1.9 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS09305 -1.2 -8.2 hypothetical protein compare
PFLU_RS17615 -1.2 -1.6 DeoR/GlpR transcriptional regulator compare
PFLU_RS00390 -1.2 -2.8 DUF2782 domain-containing protein compare
PFLU_RS29095 -1.2 -9.8 polyphosphate kinase 1 compare
PFLU_RS11980 -1.2 -4.1 precorrin-6A synthase (deacetylating) compare
PFLU_RS04435 -1.2 -4.0 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS06400 -1.2 -5.5 S-formylglutathione hydrolase compare
PFLU_RS29765 -1.1 -8.4 ABC transporter permease subunit compare
PFLU_RS22005 -1.1 -6.2 cobyric acid synthase compare
PFLU_RS21425 -1.1 -3.5 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS24930 -1.1 -2.7 hypothetical protein compare
PFLU_RS20730 -1.1 -0.8 hypothetical protein compare
PFLU_RS04140 -1.1 -0.7 response regulator transcription factor compare
PFLU_RS29770 -1.1 -6.6 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS12395 -1.1 -2.7 zinc ribbon domain-containing protein compare
PFLU_RS04430 -1.1 -4.7 ATP-binding cassette domain-containing protein compare
PFLU_RS24140 -1.0 -8.1 OprD family porin compare
PFLU_RS23185 -1.0 -6.8 protein-glutamate O-methyltransferase CheR compare
PFLU_RS29065 -1.0 -0.8 amino acid ABC transporter ATP-binding protein compare
PFLU_RS01765 -1.0 -4.9 histidine utilization repressor compare
PFLU_RS29755 -1.0 -6.1 phosphate ABC transporter ATP-binding protein compare
PFLU_RS21060 -1.0 -2.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS22015 -1.0 -5.8 cobalamin biosynthesis protein compare
PFLU_RS28755 -1.0 -4.8 ABC transporter permease subunit compare
PFLU_RS25790 -1.0 -4.2 polyribonucleotide nucleotidyltransferase compare
PFLU_RS16805 -1.0 -2.5 SDR family oxidoreductase compare
PFLU_RS03645 -1.0 -6.2 tetratricopeptide repeat protein compare
PFLU_RS08160 -1.0 -4.2 sugar transferase compare
PFLU_RS01670 -1.0 -4.9 protein-export chaperone SecB compare
PFLU_RS09495 -1.0 -2.0 helix-turn-helix transcriptional regulator compare
PFLU_RS27645 -1.0 -5.5 8-amino-7-oxononanoate synthase compare
PFLU_RS05750 -1.0 -1.6 methionine--tRNA ligase compare
PFLU_RS19915 -1.0 -1.4 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
PFLU_RS15065 -1.0 -3.4 IclR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For stress D-Glucose in Pseudomonas fluorescens SBW25-INTG

For stress D-Glucose across organisms