Experiment set13IT013 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Betaine (N); with MOPS; with Sodium chloride

200 most important genes:

  gene name fitness t score description  
PFLU_RS20575 -5.0 -5.9 3-isopropylmalate dehydratase small subunit compare
PFLU_RS27365 -4.9 -7.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20565 -4.7 -8.5 3-isopropylmalate dehydrogenase compare
PFLU_RS04465 -4.7 -7.9 ATP phosphoribosyltransferase compare
PFLU_RS27895 -4.7 -9.0 membrane dipeptidase compare
PFLU_RS28390 -4.7 -7.8 methionine biosynthesis protein MetW compare
PFLU_RS27810 -4.7 -12.4 sarcosine oxidase subunit alpha compare
PFLU_RS02050 -4.6 -13.4 NAD(P)-binding protein compare
PFLU_RS02590 -4.6 -5.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS28535 -4.6 -12.9 dihydroxy-acid dehydratase compare
PFLU_RS28645 -4.6 -15.4 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS20580 -4.5 -9.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS01895 -4.5 -4.3 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01690 -4.5 -6.1 nitrogen regulation protein NR(II) compare
PFLU_RS27865 -4.4 -12.2 glycine-betaine demethylase subunit GbcA compare
PFLU_RS28385 -4.4 -12.7 homoserine O-acetyltransferase compare
PFLU_RS02045 -4.3 -21.7 glutamate synthase large subunit compare
PFLU_RS27805 -4.3 -3.0 sarcosine oxidase subunit gamma family protein compare
PFLU_RS07230 -4.3 -9.6 RNA polymerase sigma factor RpoE compare
PFLU_RS20510 -4.3 -12.7 O-succinylhomoserine sulfhydrylase compare
PFLU_RS27370 -4.3 -9.9 anthranilate phosphoribosyltransferase compare
PFLU_RS27870 -4.3 -14.1 electron transfer flavoprotein subunit beta compare
PFLU_RS27875 -4.3 -9.5 electron transfer flavoprotein subunit alpha/FixB family protein compare
PFLU_RS27885 -4.2 -10.9 dimethylglycine demethylation protein DgcA compare
PFLU_RS25640 -4.1 -9.9 ketol-acid reductoisomerase compare
PFLU_RS20540 -4.1 -8.8 phosphoribosylanthranilate isomerase compare
PFLU_RS24765 -4.1 -21.4 2-isopropylmalate synthase compare
PFLU_RS04470 -4.0 -8.6 histidinol dehydrogenase compare
PFLU_RS27820 -4.0 -11.8 sarcosine oxidase subunit beta compare
PFLU_RS27880 -4.0 -8.1 dimethylglycine demethylation protein DgcB compare
PFLU_RS27860 -4.0 -8.5 glycine-betaine demethylase subunit GbcB compare
PFLU_RS01685 -4.0 -2.7 nitrogen regulation protein NR(I) compare
PFLU_RS01605 -3.8 -5.2 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS01900 -3.7 -5.1 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS29880 -3.7 -16.5 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS27890 -3.7 -9.8 hypothetical protein compare
PFLU_RS06265 -3.6 -17.8 [protein-PII] uridylyltransferase compare
PFLU_RS27825 -3.6 -13.2 serine hydroxymethyltransferase compare
PFLU_RS12980 -3.6 -6.9 nitrite/sulfite reductase compare
PFLU_RS28165 -3.6 -11.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS01610 -3.6 -7.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS27975 -3.6 -6.4 choline ABC transporter ATP-binding protein compare
PFLU_RS00175 -3.6 -5.9 tryptophan synthase subunit alpha compare
PFLU_RS25645 -3.4 -2.3 acetolactate synthase small subunit compare
PFLU_RS03240 -3.4 -15.5 copper-translocating P-type ATPase compare
PFLU_RS00180 -3.4 -6.9 tryptophan synthase subunit beta compare
PFLU_RS27815 -3.4 -8.2 sarcosine oxidase subunit delta compare
PFLU_RS23585 -3.3 -9.5 GntP family permease compare
PFLU_RS24025 -3.3 -12.2 quinolinate synthase NadA compare
PFLU_RS29515 -3.3 -11.6 RidA family protein compare
PFLU_RS27955 -3.3 -10.7 GlxA family transcriptional regulator compare
PFLU_RS28655 -3.3 -10.6 HAD family hydrolase compare
PFLU_RS01620 -3.3 -5.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS27970 -3.2 -10.7 choline ABC transporter permease subunit compare
PFLU_RS06310 -3.1 -8.6 sigma E protease regulator RseP compare
PFLU_RS29875 -3.1 -17.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS28415 -3.0 -9.3 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
PFLU_RS24205 -3.0 -2.1 DNA binding protein compare
PFLU_RS22095 -2.9 -18.0 GTP diphosphokinase compare
PFLU_RS00415 -2.9 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS18505 -2.9 -8.7 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS20515 -2.9 -4.0 amidophosphoribosyltransferase compare
PFLU_RS22105 -2.9 -4.8 cysteine synthase CysM compare
PFLU_RS12975 -2.9 -4.7 DUF934 domain-containing protein compare
PFLU_RS25715 -2.9 -5.8 RNA polymerase-binding protein DksA compare
PFLU_RS29885 -2.9 -10.4 LysR family transcriptional regulator compare
PFLU_RS08505 -2.8 -9.1 protease HtpX compare
PFLU_RS03970 -2.8 -9.5 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS02365 -2.8 -10.0 glycosyltransferase compare
PFLU_RS19170 -2.7 -3.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS19165 -2.7 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS29310 -2.7 -1.6 accessory factor UbiK family protein compare
PFLU_RS23920 -2.6 -3.5 septation protein A compare
PFLU_RS09055 -2.6 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS26250 -2.6 -14.6 ferredoxin--NADP reductase compare
PFLU_RS28965 -2.6 -10.6 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS01625 -2.6 -1.7 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS03770 -2.5 -12.8 sulfate adenylyltransferase subunit CysN compare
PFLU_RS05890 -2.5 -1.5 recombination regulator RecX compare
PFLU_RS16780 -2.5 -17.0 glycine betaine/L-proline transporter ProP compare
PFLU_RS29300 -2.5 -12.0 ammonium transporter compare
PFLU_RS03665 -2.5 -6.1 molybdopterin-synthase adenylyltransferase MoeB compare
PFLU_RS27965 -2.5 -11.1 choline ABC transporter substrate-binding protein compare
PFLU_RS23590 -2.5 -2.9 gluconokinase compare
PFLU_RS06055 -2.4 -1.7 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS08410 -2.4 -8.4 HTH-type transcriptional regulator CysB compare
PFLU_RS22740 -2.3 -4.4 phosphoadenylyl-sulfate reductase compare
PFLU_RS04060 -2.3 -11.2 glycine betaine ABC transporter substrate-binding protein compare
PFLU_RS04065 -2.3 -8.9 ABC transporter permease compare
PFLU_RS13010 -2.3 -4.6 Fe-S biogenesis protein NfuA compare
PFLU_RS25360 -2.3 -7.7 glutamate 5-kinase compare
PFLU_RS28695 -2.2 -5.1 phosphoglycerate dehydrogenase compare
PFLU_RS23310 -2.2 -9.5 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS07640 -2.2 -9.3 universal stress protein compare
PFLU_RS02455 -2.1 -2.5 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS04050 -2.1 -9.7 ABC transporter ATP-binding protein compare
PFLU_RS21985 -2.0 -4.4 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS07665 -2.0 -3.1 type I DNA topoisomerase compare
PFLU_RS13540 -1.9 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS27650 -1.9 -7.8 biotin synthase BioB compare
PFLU_RS25815 -1.8 -2.3 transcription termination/antitermination protein NusA compare
PFLU_RS03765 -1.8 -8.2 sulfate adenylyltransferase subunit CysD compare
PFLU_RS24330 -1.8 -3.3 phosphogluconate dehydratase compare
PFLU_RS25875 -1.8 -3.8 transcription elongation factor GreA compare
PFLU_RS04945 -1.8 -3.6 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS18410 -1.8 -3.7 response regulator compare
PFLU_RS18530 -1.8 -3.9 DNA translocase FtsK compare
PFLU_RS04055 -1.7 -7.5 ABC transporter permease compare
PFLU_RS01645 -1.7 -9.4 S41 family peptidase compare
PFLU_RS01910 -1.7 -1.6 sterol-binding protein compare
PFLU_RS22520 -1.7 -2.6 GntR family transcriptional regulator compare
PFLU_RS06395 -1.7 -8.4 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase compare
PFLU_RS29750 -1.7 -5.2 phosphate signaling complex protein PhoU compare
PFLU_RS04150 -1.7 -6.6 DUF1043 family protein compare
PFLU_RS07275 -1.6 -2.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS20660 -1.6 -8.0 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS05385 -1.6 -10.6 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS05690 -1.6 -1.8 Grx4 family monothiol glutaredoxin compare
PFLU_RS27475 -1.6 -3.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS01315 -1.6 -2.5 Hsp33 family molecular chaperone HslO compare
PFLU_RS19720 -1.6 -2.9 hypothetical protein compare
PFLU_RS04325 -1.6 -9.7 ribonuclease G compare
PFLU_RS10765 -1.6 -7.0 UvrY/SirA/GacA family response regulator transcription factor compare
PFLU_RS25735 -1.6 -3.3 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS12685 -1.6 -3.3 hypothetical protein compare
PFLU_RS21665 -1.5 -5.1 MinD/ParA family protein compare
PFLU_RS26595 -1.5 -2.3 lipoprotein compare
PFLU_RS21740 -1.5 -5.3 Hpt domain-containing protein compare
PFLU_RS18395 -1.5 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS15410 -1.5 -2.1 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS21570 -1.5 -3.6 exonuclease compare
PFLU_RS19175 -1.5 -6.6 trigger factor compare
PFLU_RS07255 -1.5 -3.9 sulfurtransferase TusA family protein compare
PFLU_RS23240 -1.5 -7.4 magnesium transporter compare
PFLU_RS01615 -1.5 -3.3 DUF2164 domain-containing protein compare
PFLU_RS31510 -1.5 -1.8 transcriptional regulator compare
PFLU_RS23305 -1.4 -7.5 arginine N-succinyltransferase compare
PFLU_RS01960 -1.4 -1.0 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS29490 -1.4 -6.4 ribonuclease PH compare
PFLU_RS09305 -1.4 -9.4 hypothetical protein compare
PFLU_RS25740 -1.4 -4.6 polynucleotide adenylyltransferase PcnB compare
PFLU_RS30160 -1.4 -2.8 ParB/RepB/Spo0J family partition protein compare
PFLU_RS21995 -1.4 -3.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS28315 -1.4 -1.0 response regulator compare
PFLU_RS21425 -1.4 -3.8 lipid A biosynthesis lauroyl acyltransferase compare
PFLU_RS31100 -1.4 -2.8 preprotein translocase subunit SecG compare
PFLU_RS14805 -1.4 -1.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS25205 -1.4 -3.5 cytochrome o ubiquinol oxidase subunit IV compare
PFLU_RS07655 -1.4 -4.1 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS11980 -1.4 -5.3 precorrin-6A synthase (deacetylating) compare
PFLU_RS28650 -1.4 -4.5 RNA pyrophosphohydrolase compare
PFLU_RS27690 -1.4 -1.9 response regulator compare
PFLU_RS29480 -1.4 -7.4 exodeoxyribonuclease III compare
PFLU_RS07540 -1.3 -2.0 class II glutamine amidotransferase compare
PFLU_RS19935 -1.3 -1.5 type II secretion system protein GspF compare
PFLU_RS13050 -1.3 -3.8 VWA domain-containing protein compare
PFLU_RS03610 -1.3 -4.2 redox-regulated ATPase YchF compare
PFLU_RS07645 -1.3 -4.0 hypothetical protein compare
PFLU_RS30510 -1.3 -3.7 glycosyltransferase family 4 protein compare
PFLU_RS10405 -1.3 -2.8 helix-turn-helix transcriptional regulator compare
PFLU_RS17920 -1.3 -2.0 acyltransferase compare
PFLU_RS25800 -1.3 -2.3 tRNA pseudouridine(55) synthase TruB compare
PFLU_RS22070 -1.3 -3.2 phosphoribosylglycinamide formyltransferase compare
PFLU_RS30730 -1.3 -2.1 helix-turn-helix domain-containing protein compare
PFLU_RS07225 -1.3 -8.4 L-aspartate oxidase compare
PFLU_RS29755 -1.3 -7.2 phosphate ABC transporter ATP-binding protein compare
PFLU_RS29095 -1.3 -10.8 polyphosphate kinase 1 compare
PFLU_RS27375 -1.3 -3.8 aminodeoxychorismate/anthranilate synthase component II compare
PFLU_RS27380 -1.3 -6.9 anthranilate synthase component I compare
PFLU_RS30630 -1.2 -1.6 hypothetical protein compare
PFLU_RS26835 -1.2 -2.3 exodeoxyribonuclease VII small subunit compare
PFLU_RS25730 -1.2 -8.3 PAS domain S-box protein compare
PFLU_RS14320 -1.2 -2.1 DUF2946 domain-containing protein compare
PFLU_RS23725 -1.2 -5.4 glucose-6-phosphate dehydrogenase compare
PFLU_RS02975 -1.2 -5.6 precorrin-3B synthase compare
PFLU_RS07755 -1.2 -3.5 heavy metal sensor histidine kinase compare
PFLU_RS05655 -1.2 -2.5 DeoR/GlpR family transcriptional regulator compare
PFLU_RS02370 -1.2 -5.1 glycosyltransferase compare
PFLU_RS02625 -1.2 -7.5 ribonuclease R compare
PFLU_RS13045 -1.2 -4.0 AAA domain-containing protein compare
PFLU_RS21990 -1.2 -4.6 alpha-ribazole phosphatase family protein compare
PFLU_RS17450 -1.2 -4.9 carboxynorspermidine decarboxylase compare
PFLU_RS10595 -1.2 -2.4 hypothetical protein compare
PFLU_RS24085 -1.2 -0.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS28420 -1.1 -6.0 thiazole synthase compare
PFLU_RS07910 -1.1 -1.6 type 1 fimbrial protein compare
PFLU_RS13000 -1.1 -8.1 methionine synthase compare
PFLU_RS20390 -1.1 -2.7 DUF1654 domain-containing protein compare
PFLU_RS29765 -1.1 -8.8 ABC transporter permease subunit compare
PFLU_RS01390 -1.1 -4.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS25955 -1.1 -1.6 hypothetical protein compare
PFLU_RS29550 -1.1 -3.6 ATP-dependent DNA helicase RecG compare
PFLU_RS02970 -1.1 -4.7 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS14170 -1.1 -3.0 TIGR03067 domain-containing protein compare
PFLU_RS28765 -1.1 -6.2 polyamine ABC transporter ATP-binding protein compare
PFLU_RS30770 -1.1 -1.9 thioredoxin family protein compare
PFLU_RS14725 -1.1 -4.4 hybrid sensor histidine kinase/response regulator compare
PFLU_RS13035 -1.1 -2.4 cobalamin biosynthesis protein CobW compare
PFLU_RS29770 -1.1 -6.5 phosphate ABC transporter substrate-binding protein PstS compare
PFLU_RS25750 -1.1 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare


Specific Phenotypes

For 6 genes in this experiment

For stress D-Glucose in Pseudomonas fluorescens SBW25-INTG

For stress D-Glucose across organisms