Experiment set13IT013 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Glucose (C) and Betaine (N); with MOPS; with Sodium chloride

200 most detrimental genes:

  gene name fitness t score description  
PFLU_RS14715 +3.1 19.9 protein-glutamate O-methyltransferase CheR compare
PFLU_RS08650 +2.6 5.1 heme exporter protein CcmB compare
PFLU_RS22600 +2.5 5.6 RNA polymerase sigma factor SigX compare
PFLU_RS25865 +2.3 5.1 YhbY family RNA-binding protein compare
PFLU_RS00435 +2.2 18.5 PAS domain-containing protein compare
PFLU_RS00460 +2.1 15.8 glutamate/aspartate:proton symporter GltP compare
PFLU_RS08655 +2.0 5.3 heme ABC transporter permease compare
PFLU_RS08665 +2.0 6.1 cytochrome c maturation protein CcmE compare
PFLU_RS08670 +2.0 8.3 heme lyase CcmF/NrfE family subunit compare
PFLU_RS29810 +1.8 11.7 LysR family transcriptional regulator compare
PFLU_RS06320 +1.6 4.9 OmpH family outer membrane protein compare
PFLU_RS27910 +1.3 2.7 helix-turn-helix transcriptional regulator compare
PFLU_RS08660 +1.3 2.7 heme exporter protein CcmD compare
PFLU_RS18885 +1.2 2.7 peptidyl-prolyl cis-trans isomerase compare
PFLU_RS27440 +1.2 5.3 nucleotidyltransferase family protein compare
PFLU_RS15785 +1.2 3.8 type II secretion system protein GspH compare
PFLU_RS04015 +1.2 2.7 1-phosphofructokinase compare
PFLU_RS24305 +1.1 4.1 antibiotic biosynthesis monooxygenase compare
PFLU_RS03555 +1.1 1.4 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS12915 +1.1 3.9 methyltransferase domain-containing protein compare
PFLU_RS08065 +1.1 6.3 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS09495 +1.1 3.8 helix-turn-helix transcriptional regulator compare
PFLU_RS09675 +1.1 6.1 hypothetical protein compare
PFLU_RS00410 +1.0 7.3 cytochrome c4 compare
PFLU_RS19665 +1.0 1.8 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS25125 +1.0 6.6 biliverdin-producing heme oxygenase compare
PFLU_RS31825 +1.0 2.7 hypothetical protein compare
PFLU_RS00445 +1.0 2.8 hypothetical protein compare
PFLU_RS09500 +1.0 1.7 hypothetical protein compare
PFLU_RS13750 +1.0 2.2 hypothetical protein compare
PFLU_RS02580 +0.9 6.6 FtsH protease activity modulator HflK compare
PFLU_RS27300 +0.9 8.4 peptidoglycan DD-metalloendopeptidase family protein compare
PFLU_RS08615 +0.9 3.3 YgdI/YgdR family lipoprotein compare
PFLU_RS05020 +0.9 1.5 DUF1120 domain-containing protein compare
PFLU_RS01320 +0.9 6.2 phosphoenolpyruvate carboxykinase compare
PFLU_RS31275 +0.9 1.5 hypothetical protein compare
PFLU_RS00520 +0.9 2.3 DUF2388 domain-containing protein compare
PFLU_RS21360 +0.9 1.0 MarR family transcriptional regulator compare
PFLU_RS14560 +0.9 3.2 DNA-binding protein compare
PFLU_RS21775 +0.9 6.2 flagellar basal body M-ring protein FliF compare
PFLU_RS22370 +0.9 6.5 cadmium-translocating P-type ATPase compare
PFLU_RS01835 +0.8 6.5 glucan biosynthesis protein G compare
PFLU_RS13885 +0.8 2.0 hypothetical protein compare
PFLU_RS27305 +0.8 5.5 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS06800 +0.8 5.0 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
PFLU_RS31010 +0.8 1.2 transposase compare
PFLU_RS05965 +0.8 1.1 hypothetical protein compare
PFLU_RS04200 +0.8 6.4 cytochrome bc complex cytochrome b subunit compare
PFLU_RS04205 +0.8 5.7 cytochrome c1 compare
PFLU_RS13300 +0.8 1.8 DNA-directed RNA polymerase sigma-70 factor compare
PFLU_RS01880 +0.8 5.7 twin-arginine translocase subunit TatC compare
PFLU_RS31440 +0.8 0.8 hypothetical protein compare
PFLU_RS00345 +0.8 3.7 ABC transporter permease compare
PFLU_RS29290 +0.8 2.7 hypothetical protein compare
PFLU_RS03980 +0.8 4.5 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS08135 +0.8 3.1 glycosyltransferase compare
PFLU_RS07235 +0.8 2.7 sigma factor AlgU negative regulatory protein compare
PFLU_RS26565 +0.8 1.4 rRNA maturation RNase YbeY compare
PFLU_RS20335 +0.8 1.6 hypothetical protein compare
PFLU_RS02410 +0.8 1.8 multidrug efflux SMR transporter compare
PFLU_RS12800 +0.8 1.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS03400 +0.8 1.5 hypothetical protein compare
PFLU_RS19240 +0.8 2.2 Zn-dependent hydrolase compare
PFLU_RS21780 +0.7 2.7 flagellar hook-basal body complex protein FliE compare
PFLU_RS01070 +0.7 2.5 alpha/beta hydrolase compare
PFLU_RS08575 +0.7 2.1 hypothetical protein compare
PFLU_RS01665 +0.7 1.7 glutaredoxin 3 compare
PFLU_RS15275 +0.7 1.6 hypothetical protein compare
PFLU_RS30670 +0.7 2.7 DUF4102 domain-containing protein compare
PFLU_RS21050 +0.7 2.5 hypothetical protein compare
PFLU_RS13715 +0.7 0.9 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS21695 +0.7 3.8 flagellar biosynthesis protein FlhB compare
PFLU_RS31830 +0.7 0.6 hypothetical protein compare
PFLU_RS17025 +0.7 4.2 HAAAP family serine/threonine permease compare
PFLU_RS27445 +0.7 6.0 phosphotransferase compare
PFLU_RS12840 +0.7 2.5 3-hydroxybutyrate dehydrogenase compare
PFLU_RS12885 +0.7 5.1 ABC transporter permease compare
PFLU_RS08675 +0.7 1.9 DsbE family thiol:disulfide interchange protein compare
PFLU_RS08125 +0.7 1.7 integration host factor subunit beta compare
PFLU_RS24475 +0.7 6.5 AmpG family muropeptide MFS transporter compare
PFLU_RS13945 +0.7 1.2 hypothetical protein compare
PFLU_RS22190 +0.7 1.0 hypothetical protein compare
PFLU_RS05960 +0.7 1.5 NADH:flavin oxidoreductase/NADH oxidase compare
PFLU_RS01285 +0.7 1.1 HAMP domain-containing protein compare
PFLU_RS21910 +0.7 6.1 BamA/TamA family outer membrane protein compare
PFLU_RS03075 +0.7 0.6 translation initiation factor Sui1 compare
PFLU_RS25120 +0.7 1.5 response regulator compare
PFLU_RS13365 +0.7 1.5 hypothetical protein compare
PFLU_RS13845 +0.7 2.0 hypothetical protein compare
PFLU_RS02555 +0.7 3.5 AMIN domain-containing protein compare
PFLU_RS26300 +0.7 4.1 NCS2 family permease compare
PFLU_RS22360 +0.7 5.8 cytochrome c oxidase accessory protein CcoG compare
PFLU_RS25225 +0.7 3.9 disulfide bond formation protein B compare
PFLU_RS01840 +0.7 5.7 glucans biosynthesis glucosyltransferase MdoH compare
PFLU_RS13795 +0.7 1.6 hypothetical protein compare
PFLU_RS31840 +0.7 1.4 hypothetical protein compare
PFLU_RS04485 +0.7 5.0 uracil phosphoribosyltransferase compare
PFLU_RS13315 +0.7 1.9 class I SAM-dependent methyltransferase compare
PFLU_RS18320 +0.7 2.3 hypothetical protein compare
PFLU_RS27580 +0.7 1.1 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS05210 +0.6 1.8 HU family DNA-binding protein compare
PFLU_RS26490 +0.6 2.2 cation diffusion facilitator family transporter compare
PFLU_RS00850 +0.6 1.8 hypothetical protein compare
PFLU_RS05410 +0.6 2.6 PadR family transcriptional regulator compare
PFLU_RS03985 +0.6 3.7 membrane protein compare
PFLU_RS21675 +0.6 5.3 flagellar biosynthesis protein FlhA compare
PFLU_RS16840 +0.6 2.9 DUF2834 domain-containing protein compare
PFLU_RS02585 +0.6 2.8 protease modulator HflC compare
PFLU_RS28285 +0.6 2.0 hypothetical protein compare
PFLU_RS08280 +0.6 1.4 hypothetical protein compare
PFLU_RS21765 +0.6 3.8 flagellar assembly protein FliH compare
PFLU_RS18370 +0.6 2.5 low molecular weight phosphotyrosine protein phosphatase compare
PFLU_RS16515 +0.6 2.2 hypothetical protein compare
PFLU_RS27985 +0.6 2.7 transcriptional regulator BetI compare
PFLU_RS21240 +0.6 1.1 hypothetical protein compare
PFLU_RS00040 +0.6 4.8 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PFLU_RS17855 +0.6 1.6 YjbF family lipoprotein compare
PFLU_RS10340 +0.6 1.4 hypothetical protein compare
PFLU_RS12740 +0.6 1.8 BcpO-related WXXGXW repeat protein compare
PFLU_RS20330 +0.6 1.4 cold-shock protein compare
PFLU_RS02575 +0.6 4.5 GTPase HflX compare
PFLU_RS21760 +0.6 4.5 flagellar protein export ATPase FliI compare
PFLU_RS23595 +0.6 4.9 LacI family DNA-binding transcriptional regulator conserved
PFLU_RS15180 +0.6 1.5 Lrp/AsnC family transcriptional regulator compare
PFLU_RS21755 +0.6 4.2 flagella biosynthesis chaperone FliJ compare
PFLU_RS13120 +0.6 0.9 hypothetical protein compare
PFLU_RS04195 +0.6 2.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS14125 +0.6 1.8 lysozyme compare
PFLU_RS00405 +0.6 2.9 cytochrome c5 family protein compare
PFLU_RS25385 +0.6 3.3 alkylphosphonate utilization protein compare
PFLU_RS18015 +0.6 1.8 energy transducer TonB compare
PFLU_RS22365 +0.6 2.7 membrane protein compare
PFLU_RS17905 +0.6 2.5 glycosyltransferase compare
PFLU_RS31755 +0.6 0.9 hypothetical protein compare
PFLU_RS01095 +0.6 1.9 ribbon-helix-helix protein, CopG family compare
PFLU_RS16565 +0.6 1.8 hypothetical protein compare
PFLU_RS01885 +0.6 2.9 Sec-independent protein translocase subunit TatB compare
PFLU_RS21710 +0.6 3.4 flagellar type III secretion system pore protein FliP compare
PFLU_RS17815 +0.6 0.8 response regulator compare
PFLU_RS02690 +0.6 1.6 hypothetical protein compare
PFLU_RS16250 +0.6 1.9 hypothetical protein compare
PFLU_RS23660 +0.6 2.4 peptide deformylase compare
PFLU_RS17925 +0.6 2.4 hypothetical protein compare
PFLU_RS17010 +0.6 3.4 universal stress protein A compare
PFLU_RS06890 +0.6 1.9 YceI family protein compare
PFLU_RS20740 +0.6 1.8 alpha/beta hydrolase fold domain-containing protein compare
PFLU_RS08060 +0.6 2.4 YciK family oxidoreductase compare
PFLU_RS12830 +0.6 4.5 PAS domain-containing protein compare
PFLU_RS06805 +0.6 5.0 efflux RND transporter permease subunit compare
PFLU_RS21730 +0.6 3.8 flagellar basal body-associated protein FliL compare
PFLU_RS21725 +0.6 4.0 flagellar motor switch protein FliM compare
PFLU_RS02950 +0.6 3.4 copper chaperone PCu(A)C compare
PFLU_RS19875 +0.6 1.6 amino acid ABC transporter ATP-binding protein compare
PFLU_RS03585 +0.6 1.1 hypothetical protein compare
PFLU_RS14450 +0.6 0.9 AzlD domain-containing protein compare
PFLU_RS10250 +0.6 2.5 glycosyltransferase family 2 protein compare
PFLU_RS15770 +0.6 2.5 type II secretion system protein GspG compare
PFLU_RS06810 +0.6 2.9 efflux RND transporter periplasmic adaptor subunit compare
PFLU_RS08980 +0.6 4.5 branched-chain amino acid transport system II carrier protein compare
PFLU_RS24300 +0.6 1.7 hypothetical protein compare
PFLU_RS12205 +0.6 1.6 DNA binding protein compare
PFLU_RS22375 +0.5 3.8 cbb3-type cytochrome oxidase assembly protein CcoS compare
PFLU_RS23830 +0.5 3.9 TrkH family potassium uptake protein compare
PFLU_RS14880 +0.5 2.3 hypothetical protein compare
PFLU_RS22535 +0.5 4.5 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
PFLU_RS23220 +0.5 1.6 tRNA-Arg compare
PFLU_RS30800 +0.5 2.3 ThiF family adenylyltransferase compare
PFLU_RS29120 +0.5 2.1 YaiI/YqxD family protein compare
PFLU_RS30070 +0.5 1.4 hypothetical protein compare
PFLU_RS31190 +0.5 3.2 taurine ABC transporter substrate-binding protein compare
PFLU_RS16390 +0.5 0.6 DUF411 domain-containing protein compare
PFLU_RS21840 +0.5 3.3 flagellar assembly peptidoglycan hydrolase FlgJ compare
PFLU_RS30840 +0.5 1.5 hypothetical protein compare
PFLU_RS19730 +0.5 1.3 glyoxylate/hydroxypyruvate reductase A compare
PFLU_RS21845 +0.5 3.0 flagellar basal body P-ring protein FlgI compare
PFLU_RS21860 +0.5 2.6 flagellar basal body rod protein FlgF compare
PFLU_RS22040 +0.5 2.9 NlpC/P60 family protein compare
PFLU_RS07695 +0.5 1.5 beta-N-acetylhexosaminidase compare
PFLU_RS11475 +0.5 0.7 histidine kinase compare
PFLU_RS18635 +0.5 1.1 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS30610 +0.5 2.2 IS3 family transposase compare
PFLU_RS28910 +0.5 3.1 glycine cleavage system protein GcvH compare
PFLU_RS12320 +0.5 3.0 nicotinate phosphoribosyltransferase compare
PFLU_RS09505 +0.5 1.6 HU family DNA-binding protein compare
PFLU_RS21895 +0.5 2.3 DMT family transporter compare
PFLU_RS07380 +0.5 1.7 LysR family transcriptional regulator compare
PFLU_RS31415 +0.5 1.8 hypothetical protein compare
PFLU_RS15470 +0.5 1.6 LysR family transcriptional regulator compare
PFLU_RS18095 +0.5 1.7 GlxA family transcriptional regulator compare
PFLU_RS14370 +0.5 1.4 hypothetical protein compare
PFLU_RS02875 +0.5 2.3 urease subunit gamma compare
PFLU_RS09955 +0.5 3.3 FKBP-type peptidyl-prolyl cis-trans isomerase compare
PFLU_RS20840 +0.5 3.0 hypothetical protein compare
PFLU_RS30825 +0.5 2.1 hypothetical protein compare
PFLU_RS11195 +0.5 2.7 ABC transporter permease compare
PFLU_RS31065 +0.5 1.2 helix-turn-helix domain-containing protein compare
PFLU_RS07550 +0.5 2.4 LysR family transcriptional regulator compare
PFLU_RS21700 +0.5 3.0 flagellar type III secretion system protein FliR compare
PFLU_RS21610 +0.5 2.7 DUF2802 domain-containing protein compare
PFLU_RS23175 +0.5 2.8 flagellar basal body rod protein FlgC compare


Specific Phenotypes

For 6 genes in this experiment

For stress D-Glucose in Pseudomonas fluorescens SBW25-INTG

For stress D-Glucose across organisms